NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944289
Clone id YMU02A01NGRL0005_J05
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_J05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGAAAGGGCAGGGACGATACGCAGCTGAGAGCAAGGGACGAAGAGTCGGTGTTGTGAGA
GAGTTGAGGGAAAATGGCGGAGGCAGCCGTGTGCGTGCCTTCTGCTTGGTCTTCCTCTGG
TCTTCTTTCTCTGCAGAGCCAATCCTTGGAGACCACCTTGAGGCAGCCCTCGATCGGCAG
TAACAGGACCTCTCTCCGCATCCATTGCGCCACGCAAGCCGCTGGTCTCCAGCCCGGCGG
TACTCGTATAATTGGCGGCAAACGTGTCAAAGTCTTACAAATTGGGGACAAATCTGGTAA
AATGCGTGATAAAATCATTGGTGAGCCTGCTGCAGTAAAGCTGTTGTCAAGGGTCCAACA
ACTAAGACTGCTGAGCAAAGCAGAGAAGGCGGGTCTCTTGTCAGCAGCCGAGAAAGCAGG
ATTATCCTTGTCTACCATAGAAAGGCTTGGCCTTCTTTCTAAGGCTGAAGGTCTTGGAGT
CTTATCTGCAGCATCGAACCCAAGTACCCCTGGGACTTTGTTGACGCTTGCCTTGGTTTT
GCT
■■Homology search results ■■ -
sp_hit_id Q5E9U3
Definition sp|Q5E9U3|TMM79_BOVIN Transmembrane protein 79 OS=Bos taurus
Align length 66
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944289|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_J05, 5'
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5E9U3|TMM79_BOVIN Transmembrane protein 79 OS=Bos taurus GN=...    32   2.6  
sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo...    31   3.4  
sp|P01102|FOS_MSVFB p55-v-fos-transforming protein OS=FBJ murine...    31   3.4  
sp|A1T041|RL9_PSYIN 50S ribosomal protein L9 OS=Psychromonas ing...    31   3.4  
sp|Q96N87|S6A18_HUMAN Sodium- and chloride-dependent transporter...    30   9.9  
sp|Q12044|RCN2_YEAST Regulator of calcineurin 2 OS=Saccharomyces...    30   9.9  

>sp|Q5E9U3|TMM79_BOVIN Transmembrane protein 79 OS=Bos taurus
           GN=TMEM79 PE=2 SV=1
          Length = 395

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
 Frame = -1

Query: 240 PPGWR----------PAACVAQWMRREVLLLPIEGCLKVVSKDWLCRERRPEED------ 109
           PPGWR          P   + +    E  LLP +     V  D  C ERRP+ED      
Sbjct: 91  PPGWRNIEPEPPESEPPTKLEELPEDEASLLPEKAARAFVPIDLQCIERRPQEDLVVCCE 150

Query: 108 QAEGTH 91
            +EG H
Sbjct: 151 ASEGEH 156


>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo
            sapiens GN=HECTD1 PE=1 SV=2
          Length = 2612

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
 Frame = -1

Query: 543  SKTKASVNKVPGVLGFDAADKTPRPSALERRP------SLSMVDKDNPAFS--------- 409
            S + AS + +    G + A++   P +  R P      S+ +V   +P  S         
Sbjct: 1444 SSSSASTSTLTAETGSENAERKLGPDSSVRTPGESSAISMGIVSVSSPDVSSVSELTNKE 1503

Query: 408  AADKRPAFSALLSSLSCWTLDNSFTAAGSPMILSRILPDLS 286
            AA +RP  S+  + LS     +S  AAG+PM  S  +P+LS
Sbjct: 1504 AASQRPLSSSASNRLSV----SSLLAAGAPMSSSASVPNLS 1540


>sp|P01102|FOS_MSVFB p55-v-fos-transforming protein OS=FBJ murine
           osteosarcoma virus GN=V-FOS PE=3 SV=1
          Length = 381

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
 Frame = -1

Query: 486 DKTPRPSALERRPSLSMVDKDNPAFS----AADKRPAFSALLSSLSCWTLDNSFTAA--- 328
           D  P+PS LE   S+S V+     F      A  RP+ S    S+    L  SF AA   
Sbjct: 246 DPEPKPS-LEPVKSISNVELKAEPFDDFLFPASSRPSGSETSRSVPNVDLSGSFYAADWE 304

Query: 327 ---GSPMILSRILPDLSPICKTLTRLPPIIRVPPGWRPAACVAQWMRR 193
               + + +  ++ +L P+C  +    P++R+P     A  V+   R+
Sbjct: 305 PLHSNSLGMGPMVTELEPLCTPVVTCTPLLRLPELTHAAGPVSSQRRQ 352


>sp|A1T041|RL9_PSYIN 50S ribosomal protein L9 OS=Psychromonas
           ingrahamii (strain 37) GN=rplI PE=3 SV=1
          Length = 150

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +2

Query: 380 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAASNPSTPGTLLTLA 532
           A++A  L+AAEK G +L+ +E + + SKA  +G L  +       T +T A
Sbjct: 56  AKQAANLAAAEKRGAALAALEAVVIASKAGDVGKLFGSIGTRDIATAITAA 106


>sp|Q96N87|S6A18_HUMAN Sodium- and chloride-dependent transporter
           XTRP2 OS=Homo sapiens GN=SLC6A18 PE=2 SV=1
          Length = 628

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 237 PGWRPAACVAQWMRREVLLLPIEGCLKVVS---KDWLCRERRPEEDQAEGTHT 88
           PGW  AACV   +   VL +P+    ++++   + W  R+ RP+ D    T T
Sbjct: 564 PGWARAACVLLSL-LPVLWVPVAALAQLLTRRRRTWRDRDARPDTDMRPDTDT 615


>sp|Q12044|RCN2_YEAST Regulator of calcineurin 2 OS=Saccharomyces
           cerevisiae GN=RCN2 PE=1 SV=1
          Length = 265

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = -1

Query: 543 SKTKASVNKVPGVLGFDA-------ADKTPRPSALERRPSLSMVDKDNPAFSAADKRPAF 385
           +K   S+N  PGV G D+       +  +P  S+LE  P++  +  D+  FS  +  P  
Sbjct: 124 NKPLLSINTDPGVTGVDSSSLNKGGSSLSPDKSSLE-SPTMLKLSTDSKPFSYQEPLPKL 182

Query: 384 SALLSSLSCWTLDNS 340
           S   SS S  +L+ S
Sbjct: 183 SRSSSSTSNLSLNRS 197
tr_hit_id A9NMI1
Definition tr|A9NMI1|A9NMI1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 100
Score (bit) 90.1
E-value 7.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944289|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_J05, 5'
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NMI1|A9NMI1_PICSI Putative uncharacterized protein OS=Picea...    90   7e-17
tr|A7QI04|A7QI04_VITVI Chromosome chr17 scaffold_101, whole geno...    86   2e-15
tr|Q9SD79|Q9SD79_ARATH Putative uncharacterized protein F13G24.2...    82   2e-14
tr|Q8VYV1|Q8VYV1_ARATH AT5g08050/F13G24_250 OS=Arabidopsis thali...    82   2e-14
tr|A9PGF4|A9PGF4_POPTR Putative uncharacterized protein OS=Popul...    82   2e-14
tr|Q2QN86|Q2QN86_ORYSJ Os12g0575000 protein OS=Oryza sativa subs...    79   2e-13
tr|B8BMN2|B8BMN2_ORYSI Putative uncharacterized protein OS=Oryza...    79   2e-13
tr|A3CIP9|A3CIP9_ORYSJ Putative uncharacterized protein OS=Oryza...    79   2e-13
tr|B4FV96|B4FV96_MAIZE Putative uncharacterized protein OS=Zea m...    77   4e-13
tr|A9S2G0|A9S2G0_PHYPA Predicted protein (Fragment) OS=Physcomit...    75   2e-12
tr|A2ZE10|A2ZE10_ORYSI Putative uncharacterized protein OS=Oryza...    63   9e-09
tr|Q2R4U2|Q2R4U2_ORYSJ Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A9TMU4|A9TMU4_PHYPA Predicted protein OS=Physcomitrella paten...    57   5e-07
tr|A9TJ04|A9TJ04_PHYPA Predicted protein OS=Physcomitrella paten...    57   5e-07
tr|B4FRC0|B4FRC0_MAIZE Putative uncharacterized protein OS=Zea m...    55   3e-06
tr|A9NZ32|A9NZ32_PICSI Putative uncharacterized protein OS=Picea...    55   3e-06
tr|B6TFL9|B6TFL9_MAIZE Putative uncharacterized protein OS=Zea m...    54   5e-06
tr|Q0JLN9|Q0JLN9_ORYSJ cDNA clone:J023103B06, full insert sequen...    53   9e-06
tr|A2WRV9|A2WRV9_ORYSI Putative uncharacterized protein OS=Oryza...    53   9e-06
tr|B7FFF0|B7FFF0_MEDTR Putative uncharacterized protein OS=Medic...    52   2e-05
tr|A9S8Z7|A9S8Z7_PHYPA Predicted protein (Fragment) OS=Physcomit...    52   2e-05
tr|A9PJV1|A9PJV1_POPJC Putative uncharacterized protein OS=Popul...    52   2e-05
tr|Q2QN87|Q2QN87_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    51   3e-05
tr|A5C347|A5C347_VITVI Putative uncharacterized protein (Chromos...    49   2e-04
tr|Q9SSF7|Q9SSF7_ARATH F25A4.30 protein OS=Arabidopsis thaliana ...    47   5e-04
tr|Q94F10|Q94F10_ARATH Putative uncharacterized protein (Putativ...    47   5e-04
tr|B7FKD0|B7FKD0_MEDTR Putative uncharacterized protein OS=Medic...    45   0.003
tr|B8PAE3|B8PAE3_9APHY Predicted protein OS=Postia placenta Mad-...    36   1.2  
tr|Q4TH71|Q4TH71_TETNG Chromosome undetermined SCAF3173, whole g...    35   2.0  
tr|B3P9Q8|B3P9Q8_DROER GG16429 OS=Drosophila erecta GN=GG16429 P...    34   4.4  

>tr|A9NMI1|A9NMI1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 183

 Score = 90.1 bits (222), Expect = 7e-17
 Identities = 53/100 (53%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
 Frame = +2

Query: 245 RIIGGKR-VKVLQIGDKSGKMRDKIIGEPAAXXXXXXXXXXXXXXXAEKAGLLSAAEKAG 421
           + +GG R VKV  +GDKS  +R K     ++               AEKAGLLSAAEK+G
Sbjct: 34  KAVGGTRQVKVFPLGDKSAVLRPKNEFNGSSIKLLSRVEQLKLLSKAEKAGLLSAAEKSG 93

Query: 422 LSLSTIERLGLLSKAEGLGVLSAASNPSTPGTLLTLALVL 541
           LSLS IE LGLLSKAE LG+LS+A++P+TPG LL LA+ L
Sbjct: 94  LSLSKIESLGLLSKAEELGILSSATDPNTPGALLNLAIAL 133


>tr|A7QI04|A7QI04_VITVI Chromosome chr17 scaffold_101, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000042001
           PE=4 SV=1
          Length = 206

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 56/117 (47%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = +2

Query: 194 LRIHC-ATQAAGLQPGGTRIIGGKRVKVLQIGDKSGKMRDKIIGEPAAXXXXXXXXXXXX 370
           L IH  ATQ   L P    I   K   V  +G+K    R   +  P              
Sbjct: 42  LLIHSMATQKPTLPPASKTISSRKASTVFPLGEKGP--RSSPLATPPPIKLLTRVEQLKL 99

Query: 371 XXXAEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAASNPSTPGTLLTLALVL 541
              AEKAGLLSAAEK G SLS+IE+LGLLSKAE  G+LSAA++P TPG LL+L+LVL
Sbjct: 100 LTKAEKAGLLSAAEKYGFSLSSIEKLGLLSKAEEFGILSAATDPGTPGALLSLSLVL 156


>tr|Q9SD79|Q9SD79_ARATH Putative uncharacterized protein F13G24.250
           OS=Arabidopsis thaliana GN=F13G24.250 PE=4 SV=1
          Length = 158

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 43/54 (79%), Positives = 47/54 (87%)
 Frame = +2

Query: 380 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAASNPSTPGTLLTLALVL 541
           AEKAGLLS AEK+G SLSTIERLGLL+KAE  GVLSAA+NP TPGTL TL+L L
Sbjct: 55  AEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAATNPETPGTLFTLSLGL 108


>tr|Q8VYV1|Q8VYV1_ARATH AT5g08050/F13G24_250 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 158

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 43/54 (79%), Positives = 47/54 (87%)
 Frame = +2

Query: 380 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAASNPSTPGTLLTLALVL 541
           AEKAGLLS AEK+G SLSTIERLGLL+KAE  GVLSAA+NP TPGTL TL+L L
Sbjct: 55  AEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAATNPETPGTLFTLSLGL 108


>tr|A9PGF4|A9PGF4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 194

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 44/54 (81%), Positives = 49/54 (90%)
 Frame = +2

Query: 380 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAASNPSTPGTLLTLALVL 541
           AEKAGLLSAAEK GLSLSTIE+LGLLSKAE LGVLSAA++P TPG LL+L+L L
Sbjct: 91  AEKAGLLSAAEKFGLSLSTIEKLGLLSKAEELGVLSAATDPGTPGALLSLSLGL 144


>tr|Q2QN86|Q2QN86_ORYSJ Os12g0575000 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0575000 PE=2 SV=1
          Length = 190

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 42/54 (77%), Positives = 48/54 (88%)
 Frame = +2

Query: 380 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAASNPSTPGTLLTLALVL 541
           AEKAGLLSAAE+AGLSLS +ERLGLLSKAE L VLSAA++P TPG LL +AL+L
Sbjct: 86  AEKAGLLSAAERAGLSLSAVERLGLLSKAEELEVLSAATDPGTPGALLGVALLL 139


>tr|B8BMN2|B8BMN2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38846 PE=4 SV=1
          Length = 190

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 42/54 (77%), Positives = 48/54 (88%)
 Frame = +2

Query: 380 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAASNPSTPGTLLTLALVL 541
           AEKAGLLSAAE+AGLSLS +ERLGLLSKAE L VLSAA++P TPG LL +AL+L
Sbjct: 86  AEKAGLLSAAERAGLSLSAVERLGLLSKAEELEVLSAATDPGTPGALLGVALLL 139


>tr|A3CIP9|A3CIP9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035171 PE=4 SV=1
          Length = 197

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 42/54 (77%), Positives = 48/54 (88%)
 Frame = +2

Query: 380 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAASNPSTPGTLLTLALVL 541
           AEKAGLLSAAE+AGLSLS +ERLGLLSKAE L VLSAA++P TPG LL +AL+L
Sbjct: 93  AEKAGLLSAAERAGLSLSAVERLGLLSKAEELEVLSAATDPGTPGALLGVALLL 146


>tr|B4FV96|B4FV96_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 193

 Score = 77.4 bits (189), Expect = 4e-13
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +2

Query: 380 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAASNPSTPGTLLTLALVL 541
           AE+AGLLSAAE+AGLSLS +ERLGLLSK E LG LSAA++P TPG LL LAL L
Sbjct: 89  AERAGLLSAAERAGLSLSAMERLGLLSKLEELGALSAATDPGTPGALLALALPL 142


>tr|A9S2G0|A9S2G0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123160 PE=4 SV=1
          Length = 119

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 40/54 (74%), Positives = 43/54 (79%)
 Frame = +2

Query: 380 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAASNPSTPGTLLTLALVL 541
           AEKAGLL+  E  G SLS IE LGLLSKAE LGVLSAA+NP+TPG LLT AL L
Sbjct: 16  AEKAGLLTTVENLGFSLSKIESLGLLSKAEELGVLSAATNPATPGALLTTALAL 69