DK944292 |
Clone id |
YMU02A01NGRL0005_J09 |
Library |
YMU02 |
Length |
436 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_J09. 5' end sequence. |
Accession |
DK944292 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL425Contig1 |
Sequence |
GCATGCTCCGCTTTGTGTGGATGGAGAAGAACATTGGAATCGGACTTGACCAGGTCGTAC CTGGTCATGGAACCGTTCCCCTCAGCTCTTATTACTTCTGGCCACGCAAAGATGCTTGGG AGGAAATCAAGACAAAGCTTGAGAGCAAGAAGTGGATATCCAGGAAACAGACAATACTTC TCTTGAACCAAGCAACAGATGTCATCAACCTATGGCAACAAAATGCGACAGGCTAAGATG CGATATATGAATGAACGGGGCAGCAAATTTTCGCTTTGGGTTGCACACAAATTCTCATTG TAACATGGGTCCCCCCCCCGCCCTCTCCCCCCCAAAAAGAACCCTGGTTGAGGTTTAATG CATGCATGTGACCTTCATGGGGAATTTTTGCATCTCTTTGTCACGCAAAAAAAAAAAAAA AAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P82412 |
Definition |
sp|P82412|RRP3_SPIOL 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea |
Align length |
74 |
Score (bit) |
133.0 |
E-value |
3.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944292|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_J09, 5' (406 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P82412|RRP3_SPIOL 30S ribosomal protein 3, chloroplastic OS=S... 133 3e-31 sp|Q9SX22|RRP31_ARATH 30S ribosomal protein 3-1, chloroplastic O... 132 5e-31 sp|O48609|RRP3_HORVU 30S ribosomal protein 3, chloroplastic OS=H... 130 3e-30 sp|Q9LFV0|RRP32_ARATH 30S ribosomal protein 3-2, chloroplastic O... 120 2e-27 sp|Q5N172|RRP3_SYNP6 Probable 30S ribosomal protein PSRP-3 OS=Sy... 99 8e-21 sp|O05161|RRP3_SYNE7 Probable 30S ribosomal protein PSRP-3 OS=Sy... 99 8e-21 sp|Q1XDD6|RRP3_PORYE Probable 30S ribosomal protein 3, chloropla... 99 8e-21 sp|P51351|RRP3_PORPU Probable 30S ribosomal protein 3, chloropla... 99 8e-21 sp|Q9MUN2|RRP3_MESVI Probable 30S ribosomal protein 3, chloropla... 96 7e-20 sp|Q3M6B5|RRP3_ANAVT Probable 30S ribosomal protein PSRP-3 OS=An... 95 1e-19 sp|Q8YSC1|RRP3_ANASP Probable 30S ribosomal protein PSRP-3 OS=An... 95 1e-19 sp|P59327|RRP3_THEEB Probable 30S ribosomal protein PSRP-3 OS=Th... 94 2e-19 sp|O78422|RRP3_GUITH Probable 30S ribosomal protein 3, chloropla... 94 2e-19 sp|B0CBD5|RRP3_ACAM1 Probable 30S ribosomal protein PSRP-3 OS=Ac... 94 2e-19 sp|Q55385|RRP3_SYNY3 Probable 30S ribosomal protein PSRP-3 OS=Sy... 93 5e-19 sp|Q7VA74|RRP3_PROMA Probable 30S ribosomal protein PSRP-3 OS=Pr... 93 5e-19 sp|Q9BAC0|RRP3_EUGST Probable 30S ribosomal protein 3, chloropla... 92 6e-19 sp|Q7V048|RRP3_PROMP Probable 30S ribosomal protein PSRP-3 OS=Pr... 89 5e-18 sp|Q9BAC5|RRP3_EUGGA Probable 30S ribosomal protein 3, chloropla... 89 5e-18 sp|Q7V5U0|RRP3_PROMM Probable 30S ribosomal protein PSRP-3 OS=Pr... 88 1e-17 sp|Q9BAB9|RRP3_EUGVI Probable 30S ribosomal protein 3, chloropla... 88 1e-17 sp|Q6B913|RRP3_GRATL Probable 30S ribosomal protein 3, chloropla... 87 2e-17 sp|Q9BAC3|RRP3_EUGMU Probable 30S ribosomal protein 3, chloropla... 76 6e-14 sp|Q9TLZ0|RRP3_CYACA Probable 30S ribosomal protein 3, chloropla... 76 6e-14 sp|Q9BAC2|RRP3_EUGMY Probable 30S ribosomal protein 3, chloropla... 70 2e-12 sp|Q5ZKU4|INT2_CHICK Integrator complex subunit 2 OS=Gallus gall... 33 0.44 sp|Q80UK8|INT2_MOUSE Integrator complex subunit 2 OS=Mus musculu... 32 0.97 sp|Q9H0H0|INT2_HUMAN Integrator complex subunit 2 OS=Homo sapien... 32 0.97 sp|Q4FPA9|SYI_PELUB Isoleucyl-tRNA synthetase OS=Pelagibacter ub... 29 8.2
>sp|P82412|RRP3_SPIOL 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1 Length = 179
Score = 133 bits (334), Expect = 3e-31 Identities = 56/74 (75%), Positives = 67/74 (90%) Frame = +3
Query: 3 MLRFVWMEKNIGIGLDQVVPGHGTVPLSSYYFWPRKDAWEEIKTKLESKKWISRKQTILL 182 +L+F+WMEKNIG+ LDQ +PGHGTVPLS YYFWPRKDAWEE+K LE+K WIS+KQ I+L Sbjct: 100 VLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIIL 159
Query: 183 LNQATDVINLWQQN 224 LNQATD+INLWQQ+ Sbjct: 160 LNQATDIINLWQQS 173
>sp|Q9SX22|RRP31_ARATH 30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=At1g68590 PE=1 SV=1 Length = 166
Score = 132 bits (332), Expect = 5e-31 Identities = 56/74 (75%), Positives = 69/74 (93%) Frame = +3
Query: 3 MLRFVWMEKNIGIGLDQVVPGHGTVPLSSYYFWPRKDAWEEIKTKLESKKWISRKQTILL 182 +L+FVWMEKNIG+GLDQ VPGHGT+PLS Y+FWPRKDAWEE+K+ LE+K WIS+K+ I+L Sbjct: 86 VLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIIL 145
Query: 183 LNQATDVINLWQQN 224 LNQATD+INLWQQ+ Sbjct: 146 LNQATDIINLWQQS 159
>sp|O48609|RRP3_HORVU 30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare GN=PSRP3 PE=2 SV=1 Length = 181
Score = 130 bits (326), Expect = 3e-30 Identities = 55/73 (75%), Positives = 67/73 (91%) Frame = +3
Query: 3 MLRFVWMEKNIGIGLDQVVPGHGTVPLSSYYFWPRKDAWEEIKTKLESKKWISRKQTILL 182 +L+F+WMEKNIGI LDQ+VPG G++PLS YYFWPRKDAWEE++ KLE K+WIS+KQ I+L Sbjct: 102 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIIL 161
Query: 183 LNQATDVINLWQQ 221 LNQATD+INLWQQ Sbjct: 162 LNQATDIINLWQQ 174
>sp|Q9LFV0|RRP32_ARATH 30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=At5g15760 PE=2 SV=1 Length = 183
Score = 120 bits (301), Expect = 2e-27 Identities = 50/74 (67%), Positives = 62/74 (83%) Frame = +3
Query: 3 MLRFVWMEKNIGIGLDQVVPGHGTVPLSSYYFWPRKDAWEEIKTKLESKKWISRKQTILL 182 +L+FVWM+K+IG+ LD ++PG GT+PLS YYFWPRKDAWEE+KT LESK WIS + L Sbjct: 105 VLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFL 164
Query: 183 LNQATDVINLWQQN 224 LNQATD+INLWQ + Sbjct: 165 LNQATDIINLWQSS 178
>sp|Q5N172|RRP3_SYNP6 Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1758_d PE=3 SV=1 Length = 112
Score = 98.6 bits (244), Expect = 8e-21 Identities = 41/76 (53%), Positives = 58/76 (76%) Frame = +3
Query: 6 LRFVWMEKNIGIGLDQVVPGHGTVPLSSYYFWPRKDAWEEIKTKLESKKWISRKQTILLL 185 ++ +W+ +N+ I +DQVV G T PL++YYFWPR DAWE++KT+LESK WI+ + + LL Sbjct: 19 IKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERVELL 77
Query: 186 NQATDVINLWQQNATG 233 NQAT+VIN WQ+ G Sbjct: 78 NQATEVINYWQEEGKG 93
>sp|O05161|RRP3_SYNE7 Probable 30S ribosomal protein PSRP-3 OS=Synechococcus elongatus (strain PCC 7942) GN=mut3G PE=3 SV=1 Length = 112
Score = 98.6 bits (244), Expect = 8e-21 Identities = 41/76 (53%), Positives = 58/76 (76%) Frame = +3
Query: 6 LRFVWMEKNIGIGLDQVVPGHGTVPLSSYYFWPRKDAWEEIKTKLESKKWISRKQTILLL 185 ++ +W+ +N+ I +DQVV G T PL++YYFWPR DAWE++KT+LESK WI+ + + LL Sbjct: 19 IKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERVELL 77
Query: 186 NQATDVINLWQQNATG 233 NQAT+VIN WQ+ G Sbjct: 78 NQATEVINYWQEEGKG 93
>sp|Q1XDD6|RRP3_PORYE Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra yezoensis GN=ycf65 PE=3 SV=1 Length = 102
Score = 98.6 bits (244), Expect = 8e-21 Identities = 42/72 (58%), Positives = 57/72 (79%) Frame = +3
Query: 6 LRFVWMEKNIGIGLDQVVPGHGTVPLSSYYFWPRKDAWEEIKTKLESKKWISRKQTILLL 185 L+ +W+E NI I +DQ+V G+GT PL+SY+FWPR DAWEE+K +LESK WI+ + I LL Sbjct: 11 LKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRIELL 69
Query: 186 NQATDVINLWQQ 221 N+ T+VIN WQ+ Sbjct: 70 NKTTEVINYWQE 81
>sp|P51351|RRP3_PORPU Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea GN=ycf65 PE=3 SV=1 Length = 99
Score = 98.6 bits (244), Expect = 8e-21 Identities = 42/72 (58%), Positives = 57/72 (79%) Frame = +3
Query: 6 LRFVWMEKNIGIGLDQVVPGHGTVPLSSYYFWPRKDAWEEIKTKLESKKWISRKQTILLL 185 L+ +W+E NI I +DQ+V G+GT PL+SY+FWPR DAWEE+K +LESK WI+ + I LL Sbjct: 6 LKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRIELL 64
Query: 186 NQATDVINLWQQ 221 N+ T+VIN WQ+ Sbjct: 65 NKTTEVINYWQE 76
>sp|Q9MUN2|RRP3_MESVI Probable 30S ribosomal protein 3, chloroplastic OS=Mesostigma viride GN=ycf65 PE=3 SV=1 Length = 123
Score = 95.5 bits (236), Expect = 7e-20 Identities = 40/74 (54%), Positives = 56/74 (75%) Frame = +3
Query: 3 MLRFVWMEKNIGIGLDQVVPGHGTVPLSSYYFWPRKDAWEEIKTKLESKKWISRKQTILL 182 +L+F+W+EKN+ + +DQV G P++ Y+FWPRKDAWEE+K L +K WIS ++I L Sbjct: 22 VLKFLWLEKNLAVTVDQVT-NRGNSPITEYFFWPRKDAWEELKDALANKPWISYDESIAL 80
Query: 183 LNQATDVINLWQQN 224 LNQ TDVIN WQ++ Sbjct: 81 LNQTTDVINYWQED 94
>sp|Q3M6B5|RRP3_ANAVT Probable 30S ribosomal protein PSRP-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_3866 PE=3 SV=1 Length = 99
Score = 94.7 bits (234), Expect = 1e-19 Identities = 40/73 (54%), Positives = 57/73 (78%) Frame = +3
Query: 3 MLRFVWMEKNIGIGLDQVVPGHGTVPLSSYYFWPRKDAWEEIKTKLESKKWISRKQTILL 182 +L+ +W+++N+ + +DQVV G GT PL+ Y+FWPR DAWEE+K +LESK WIS + L Sbjct: 5 ILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVEL 63
Query: 183 LNQATDVINLWQQ 221 LN+AT+VIN WQ+ Sbjct: 64 LNKATEVINYWQE 76
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TJ53 |
Definition |
tr|A9TJ53|A9TJ53_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
76 |
Score (bit) |
146.0 |
E-value |
6.0e-34 |
Report |
|