DK944299 |
Clone id |
YMU02A01NGRL0005_J17 |
Library |
YMU02 |
Length |
291 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_J17. 5' end sequence. |
Accession |
DK944299 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1Contig2 |
Sequence |
GAGCCGGAGGAGGAAAAAGCAAAAGCGATTCCCCTAGTAACGGCGAGTGAAACGGGAAGA GCCTAAACCGTGAAGACGGGGTTGTGGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAA GCAGTTGAGTGCTGCACCCCAGATGGTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCA CGCTCCAACCCAAGTAGCATGGGGCACGCAAAATCCCGTGTGAATCAGCGAGGACCACCT TGTAAGGCTAAATATTCCTGAGTGACCGATAGCGAAGCAGTACCGTGAGGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3SYW2 |
Definition |
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus |
Align length |
40 |
Score (bit) |
30.0 |
E-value |
3.7 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A6H5B3 |
Definition |
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata |
Align length |
54 |
Score (bit) |
89.0 |
E-value |
1.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944299|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_J17, 5' (291 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ... 89 1e-16 tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16 tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16 tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16 tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag... 75 2e-12 tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome... 53 2e-09 tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh... 64 3e-09 tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who... 63 6e-09 tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 60 7e-08 tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen... 56 1e-06 tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne... 55 2e-06 tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo... 55 2e-06 tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo... 52 1e-05 tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo... 52 1e-05 tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri... 52 1e-05 tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri... 52 2e-05 tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi... 50 4e-05 tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche... 50 6e-05 tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O... 41 9e-05 tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh... 49 2e-04 tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul... 47 4e-04 tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1 33 7e-04 tr|B0MI66|B0MI66_9FIRM Putative uncharacterized protein (Fragmen... 46 0.001 tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 44 0.003 tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea... 44 0.005 tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte... 43 0.007 tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep... 43 0.009 tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep... 43 0.009 tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen... 43 0.009 tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep... 43 0.009
>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 79
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +1
Query: 124 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 285 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 23 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76
>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 87
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +1
Query: 124 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 285 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 29 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82
>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 90
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +1
Query: 124 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 285 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 32 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85
>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 85
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +1
Query: 124 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 285 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 27 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80
>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1 Length = 52
Score = 74.7 bits (182), Expect = 2e-12 Identities = 35/47 (74%), Positives = 40/47 (85%) Frame = +1
Query: 145 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 285 G+SPV+ S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 1 GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47
>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001 PE=4 SV=1 Length = 390
Score = 53.1 bits (126), Expect(2) = 2e-09 Identities = 24/32 (75%), Positives = 25/32 (78%) Frame = -1
Query: 288 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 193 SRY FAI H +FSL RWS LIHTGF VPHAT Sbjct: 241 SRYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272
Score = 32.0 bits (71), Expect(2) = 2e-09 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = -2
Query: 176 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 69 L +L ATG SPS VQH SHNP+FT Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309
>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole genome shotgun sequence (Fragment) OS=Vitis vinifera GN=GSVIVT00011927001 PE=4 SV=1 Length = 60
Score = 64.3 bits (155), Expect = 3e-09 Identities = 33/59 (55%), Positives = 39/59 (66%) Frame = +1
Query: 55 GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 231 G A VKTGLWES++ LL EA ECCT DG+SPVA S S S+ SSMGH + +R Sbjct: 2 GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60
>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00010999001 PE=4 SV=1 Length = 73
Score = 63.2 bits (152), Expect = 6e-09 Identities = 32/59 (54%), Positives = 39/59 (66%) Frame = +1
Query: 55 GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 231 G A VKTGLWES++ LL EA ECCT DG+SPVA S S S+ +SMGH + +R Sbjct: 2 GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGHEMPKKEKR 60
>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 Length = 44
Score = 59.7 bits (143), Expect = 7e-08 Identities = 28/36 (77%), Positives = 29/36 (80%) Frame = -1
Query: 288 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 181 SRY FAIGH G+FSL RWS LIHTGF VPHAT V A Sbjct: 9 SRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44
>tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragment) OS=Vibrio cholerae 1587 GN=A55_B0049 PE=4 SV=1 Length = 171
Score = 55.8 bits (133), Expect = 1e-06 Identities = 42/101 (41%), Positives = 50/101 (49%), Gaps = 5/101 (4%) Frame = -2
Query: 290 PHGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPSGVQHXXXXXX 111 PHGT SLSV+QEYLAL+ GP F +D CP LL + A TGLSP Sbjct: 24 PHGTGSLSVSQEYLALEDGPPIFRQDITCPALLDFTLDEA--SVTGLSP----------- 70
Query: 110 XXXXXXXSHNPVFT-----V*ALPVSLAVTRGIAFAFSSSG 3 + +FT + A P SLA T GI+ F SSG Sbjct: 71 ----CIAKLSSLFTYFTECLRANPGSLAATTGISVDFFSSG 107
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