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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944306
Clone id YMU02A01NGRL0005_K02
Library
Length 414
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_K02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGTACGCAGCAACTAAGATTTGAGCGTGAATCAGGCGAGGAAGAGGAAGAACAGGAAGAA
GAGCAGGAAGTAGACCCTGCTCTTGCTCCCCACAGCTCTTCATAAAGAACTGCGCACCCT
TGTTTGGGATTCCTGCTGAGCTCAAACCTCTAATGAAAGTGGAGGGAGAAGTATCTTTGC
ACGTGGGTTGTCATTTGTGGTCGACACAGATGTGTATAGAATTGAGGACCTGCGTGAAAA
TTTTTGTGTAAGTATGTGCATGCGCTTGTCTTAAGGAAGTCTGTCCACTCACAATGGATC
ACACACTACAGGATATGTCTTTTCACCTACCATTTTTGTTGAGATTTTTGCTCCAAAGAT
GAAAGAGAATTCTTTAATTTTGCCCNNNAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q24JP5
Definition sp|Q24JP5|T132A_HUMAN Transmembrane protein 132A OS=Homo sapiens
Align length 53
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944306|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_K02, 5'
         (388 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q24JP5|T132A_HUMAN Transmembrane protein 132A OS=Homo sapiens...    32   1.3  
sp|Q80WF4|T132A_RAT Transmembrane protein 132A OS=Rattus norvegi...    29   6.5  
sp|Q922P8|T132A_MOUSE Transmembrane protein 132A OS=Mus musculus...    29   6.5  

>sp|Q24JP5|T132A_HUMAN Transmembrane protein 132A OS=Homo sapiens
           GN=TMEM132A PE=2 SV=1
          Length = 1023

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = +3

Query: 108 NCAPLFGIPAELKP-LMKVEG-----EVSLHVGCHLWSTQMCIELRTCVKIFV 248
           N APL G+P  +   L+ V+G     EV+ HVGC   +TQ+      C  +FV
Sbjct: 410 NTAPLTGVPQHVPVRLVTVDGGGALVEVTEHVGCESANTQVLQVSEACDAVFV 462


>sp|Q80WF4|T132A_RAT Transmembrane protein 132A OS=Rattus norvegicus
           GN=Tmem132a PE=1 SV=1
          Length = 1021

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 108 NCAPLFGIPAELKP-LMKVEG-----EVSLHVGCHLWSTQMCIELRTCVKIFV 248
           N APL G+P  +   L+ V+      EV+ H+GC   +TQ+      C  +FV
Sbjct: 406 NTAPLTGVPQRIPVRLVTVDSGGALEEVTEHIGCESANTQVLQVSEACDAVFV 458


>sp|Q922P8|T132A_MOUSE Transmembrane protein 132A OS=Mus musculus
           GN=Tmem132a PE=2 SV=2
          Length = 1018

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 108 NCAPLFGIPAELKP-LMKVEG-----EVSLHVGCHLWSTQMCIELRTCVKIFV 248
           N APL G+P  +   L+ V+      EV+ H+GC   +TQ+      C  +FV
Sbjct: 406 NTAPLTGVPQRIPVRLVTVDSGGALEEVTEHIGCESANTQVLQVSEACDAVFV 458
tr_hit_id Q8PYX6
Definition tr|Q8PYX6|Q8PYX6_METMA Nitrogenase molybdenum-iron protein beta chain (NifK) OS=Methanosarcina mazei
Align length 50
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944306|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_K02, 5'
         (388 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8PYX6|Q8PYX6_METMA Nitrogenase molybdenum-iron protein beta ...    33   9.3  

>tr|Q8PYX6|Q8PYX6_METMA Nitrogenase molybdenum-iron protein beta
           chain (NifK) OS=Methanosarcina mazei GN=nifK PE=3 SV=1
          Length = 456

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 221 IEDLRENFCVSMCMRLS*GSLSTHNGSHTTGYVFSPTIFVEIFAPKMKEN 370
           IED+R    +   +++   S  ++ G+H TGY      FV IFA K K N
Sbjct: 119 IEDVRAEELIDPSIKICAASTPSYVGTHITGYDNMVKSFVTIFARKTKPN 168