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NBDC - LSDB Archive
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DK944315
Clone id YMU02A01NGRL0005_K12
Library
Length 218
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_K12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCCGATCGTCTGTGCTGCTGCAGCAAACCAGCGGCCATGGTGAACGTTCCAAAGACGAAG
AAGTCCTTTTGCAAGGGCAAGGACTGCAAGAAGCACACTTTGCATAAGGTGACTCAATAC
AAGAAGGGCAAGGACAGTCTCTATGTGCAAGGAAAGAGGCGTTATGACAGGAAGCTCTCT
TTTCTGTATCAAATTCTGCCAAGAAGCAAGATTGCGCA
■■Homology search results ■■ -
sp_hit_id Q96499
Definition sp|Q96499|RL44_GOSHI 60S ribosomal protein L44 OS=Gossypium hirsutum
Align length 48
Score (bit) 61.2
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944315|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_K12, 5'
         (218 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96499|RL44_GOSHI 60S ribosomal protein L44 OS=Gossypium hirs...    61   2e-09
sp|O23290|RL36A_ARATH 60S ribosomal protein L36a OS=Arabidopsis ...    61   2e-09
sp|O59870|RL44_PHARH 60S ribosomal protein L44 OS=Phaffia rhodoz...    60   4e-09
sp|Q9UWE4|RL44_COPCI 60S ribosomal protein L44 OS=Coprinopsis ci...    59   6e-09
sp|A8PCG3|RL44_COPC7 60S ribosomal protein L44 OS=Coprinopsis ci...    59   6e-09
sp|Q9HF88|RL44_CRYNE 60S ribosomal protein L44 OS=Cryptococcus n...    58   1e-08
sp|Q6CFS7|RL44_YARLI 60S ribosomal protein L44 OS=Yarrowia lipol...    57   4e-08
sp|Q4PNY0|RL44_CANGY 60S ribosomal protein L44 OS=Candida glycer...    56   5e-08
sp|P27074|RL44Q_CANMA 60S ribosomal protein L44 Q OS=Candida mal...    56   6e-08
sp|P02405|RL44_YEAST 60S ribosomal protein L42 OS=Saccharomyces ...    55   8e-08
sp|P52809|RL44_PICJA 60S ribosomal protein L44 OS=Pichia jadinii...    55   8e-08
sp|P31866|RL44_PICGU 60S ribosomal protein L44 OS=Pichia guillie...    55   8e-08
sp|Q9UVB8|RL44_PICCI 60S ribosomal protein L44 OS=Pichia ciferri...    55   8e-08
sp|P27076|RL44_KLUMA 60S ribosomal protein L44 OS=Kluyveromyces ...    55   8e-08
sp|P27075|RL44_CANTR 60S ribosomal protein L44 OS=Candida tropic...    55   8e-08
sp|Q754N8|RL44_ASHGO 60S ribosomal protein L44 OS=Ashbya gossypi...    55   8e-08
sp|P83883|RL36A_RAT 60S ribosomal protein L36a OS=Rattus norvegi...    55   8e-08
sp|P83884|RL36A_PIG 60S ribosomal protein L36a OS=Sus scrofa GN=...    55   8e-08
sp|P83882|RL36A_MOUSE 60S ribosomal protein L36a OS=Mus musculus...    55   8e-08
sp|P61487|RL36A_ICTPU 60S ribosomal protein L36a OS=Ictalurus pu...    55   8e-08
sp|P83881|RL36A_HUMAN 60S ribosomal protein L36a OS=Homo sapiens...    55   8e-08
sp|P61486|RL36A_FUGRU 60S ribosomal protein L36a OS=Fugu rubripe...    55   8e-08
sp|P61485|RL36A_DANRE 60S ribosomal protein L36a OS=Danio rerio ...    55   8e-08
sp|Q3SZ59|RL36A_BOVIN 60S ribosomal protein L36a OS=Bos taurus G...    55   8e-08
sp|P31027|RL44_KLULA 60S ribosomal protein L44 OS=Kluyveromyces ...    55   1e-07
sp|P31028|RL44_DEBOC 60S ribosomal protein L44 OS=Debaryomyces o...    55   1e-07
sp|Q6BLK0|RL44_DEBHA 60S ribosomal protein L44 OS=Debaryomyces h...    55   1e-07
sp|Q00477|RL44P_CANMA 60S ribosomal protein L44 P OS=Candida mal...    55   1e-07
sp|Q9UTI8|RL44_SCHPO 60S ribosomal protein L44 OS=Schizosaccharo...    54   2e-07
sp|Q5R9D2|RL36L_PONAB 60S ribosomal protein L36a-like OS=Pongo a...    54   2e-07

>sp|Q96499|RL44_GOSHI 60S ribosomal protein L44 OS=Gossypium
           hirsutum GN=RPL44 PE=3 SV=3
          Length = 105

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 31/48 (64%), Positives = 31/48 (64%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVNVP              HTLHKVTQYKKGKDSL  QGKRRYDRK S
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQS 48


>sp|O23290|RL36A_ARATH 60S ribosomal protein L36a OS=Arabidopsis
           thaliana GN=RPL36AA PE=2 SV=3
          Length = 105

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/48 (62%), Positives = 31/48 (64%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVN+P              HTLHKVTQYKKGKDSL  QGKRRYDRK S
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQS 48


>sp|O59870|RL44_PHARH 60S ribosomal protein L44 OS=Phaffia rhodozyma
           GN=RPL44 PE=3 SV=3
          Length = 106

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 29/48 (60%), Positives = 31/48 (64%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVNVP              HT HKVTQYKKGKDS++ QGKRRYDRK S
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQS 48


>sp|Q9UWE4|RL44_COPCI 60S ribosomal protein L44 OS=Coprinopsis
           cinerea GN=RPL44 PE=3 SV=3
          Length = 106

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 28/48 (58%), Positives = 31/48 (64%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVN+P              HT HKVTQYKKGKDS++ QGKRRYDRK S
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQS 48


>sp|A8PCG3|RL44_COPC7 60S ribosomal protein L44 OS=Coprinopsis
           cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPL44
           PE=3 SV=2
          Length = 106

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 28/48 (58%), Positives = 31/48 (64%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVN+P              HT HKVTQYKKGKDS++ QGKRRYDRK S
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQS 48


>sp|Q9HF88|RL44_CRYNE 60S ribosomal protein L44 OS=Cryptococcus
           neoformans GN=RPL44 PE=3 SV=3
          Length = 106

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 29/48 (60%), Positives = 30/48 (62%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVN+P              HT HKVTQYKKGKDSL  QGKRRYDRK S
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQS 48


>sp|Q6CFS7|RL44_YARLI 60S ribosomal protein L44 OS=Yarrowia
           lipolytica GN=RPL44 PE=3 SV=3
          Length = 106

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 28/48 (58%), Positives = 29/48 (60%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVN+P              HT HKVTQYK GK SLY QGKRRYDRK S
Sbjct: 1   MVNIPKTRNTYCKGKECRKHTQHKVTQYKAGKASLYAQGKRRYDRKQS 48


>sp|Q4PNY0|RL44_CANGY 60S ribosomal protein L44 OS=Candida
           glycerinogenes GN=RPL44 PE=3 SV=3
          Length = 106

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 29/48 (60%), Positives = 29/48 (60%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVNVP              HT HKVTQYK GK SLY QGKRRYDRK S
Sbjct: 1   MVNVPKTRKTYCKGKQCKKHTQHKVTQYKAGKASLYSQGKRRYDRKQS 48


>sp|P27074|RL44Q_CANMA 60S ribosomal protein L44 Q OS=Candida
           maltosa GN=RIM-C PE=3 SV=2
          Length = 106

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 26/48 (54%), Positives = 30/48 (62%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVN+P              HT+HKVTQYK G+ SL+ QGKRRYDRK S
Sbjct: 1   MVNIPKTRNTYCKGKGCRKHTIHKVTQYKSGRASLFAQGKRRYDRKQS 48


>sp|P02405|RL44_YEAST 60S ribosomal protein L42 OS=Saccharomyces
           cerevisiae GN=RPL42A PE=1 SV=3
          Length = 106

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 28/48 (58%), Positives = 29/48 (60%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVNVP              HT HKVTQYK GK SL+ QGKRRYDRK S
Sbjct: 1   MVNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQS 48
tr_hit_id A9ST20
Definition tr|A9ST20|A9ST20_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 66.2
E-value 8.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944315|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_K12, 5'
         (218 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9ST20|A9ST20_PHYPA Predicted protein OS=Physcomitrella paten...    66   8e-10
tr|A9RQN3|A9RQN3_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|A9RD45|A9RD45_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|Q86EU7|Q86EU7_SCHJA Clone ZZD1408 mRNA sequence OS=Schistosom...    64   3e-09
tr|B8LKF1|B8LKF1_PICSI Putative uncharacterized protein OS=Picea...    63   8e-09
tr|A9RFG1|A9RFG1_PHYPA Predicted protein (Fragment) OS=Physcomit...    63   8e-09
tr|A9UDU7|A9UDU7_9BILA Putative 60S ribosomal protein RPL36A OS=...    63   8e-09
tr|A8UFM0|A8UFM0_AREMA Ribosomal protein rpl36a OS=Arenicola mar...    63   8e-09
tr|Q94ER6|Q94ER6_BRARP 60S ribosomal protein L144 (Fragment) OS=...    62   1e-08
tr|B5XCV1|B5XCV1_SALSA 60S ribosomal protein L36a OS=Salmo salar...    61   2e-08
tr|Q8H5N0|Q8H5N0_ORYSJ Os07g0450000 protein OS=Oryza sativa subs...    61   2e-08
tr|Q6RI22|Q6RI22_9ASPA 60S ribosomal protein L44 OS=Phalaenopsis...    61   2e-08
tr|Q2V9C3|Q2V9C3_SOLTU Ribosomal protein L41-like OS=Solanum tub...    61   2e-08
tr|B6TXV2|B6TXV2_MAIZE 60S ribosomal protein L44 OS=Zea mays PE=...    61   2e-08
tr|B6SIY6|B6SIY6_MAIZE 60S ribosomal protein L44 OS=Zea mays PE=...    61   2e-08
tr|B3TLV9|B3TLV9_ELAGV 60S ribosomal protein L44 OS=Elaeis guine...    61   2e-08
tr|B3TLU1|B3TLU1_ELAGV 60S ribosomal protein L44 OS=Elaeis guine...    61   2e-08
tr|B3TLU0|B3TLU0_ELAGV 60S ribosomal protein L44 OS=Elaeis guine...    61   2e-08
tr|A9PD13|A9PD13_POPTR Putative uncharacterized protein OS=Popul...    61   2e-08
tr|A9P9G6|A9P9G6_POPTR Putative uncharacterized protein OS=Popul...    61   2e-08
tr|A9NQ93|A9NQ93_PICSI Putative uncharacterized protein OS=Picea...    61   2e-08
tr|A6N0K7|A6N0K7_ORYSI Putative uncharacterized protein OS=Oryza...    61   2e-08
tr|A3BJC7|A3BJC7_ORYSJ Putative uncharacterized protein OS=Oryza...    61   2e-08
tr|Q00508|Q00508_CANMA Ribosomal protein L41 OS=Candida maltosa ...    61   2e-08
tr|A8UAA1|A8UAA1_9BILA Putative ribosomal protein L36a OS=Barent...    61   3e-08
tr|A8E6A4|A8E6A4_9BILA Putative 60S ribosomal protein L44/L36a O...    61   3e-08
tr|A7Q2A2|A7Q2A2_VITVI Chromosome chr13 scaffold_45, whole genom...    60   4e-08
tr|B6SHJ5|B6SHJ5_MAIZE 60S ribosomal protein L44 OS=Zea mays PE=...    60   6e-08
tr|B0DTV7|B0DTV7_LACBS Predicted protein OS=Laccaria bicolor (st...    60   6e-08
tr|Q6B8B7|Q6B8B7_9ACAR Ribosomal protein L44 OS=Ixodes pacificus...    60   7e-08

>tr|A9ST20|A9ST20_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_106959 PE=3 SV=1
          Length = 105

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 33/48 (68%), Positives = 33/48 (68%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVNVP              HTLHKVTQYKKGKDSLYVQGKRRYDRK S
Sbjct: 1   MVNVPKTKKSFCPGKACKKHTLHKVTQYKKGKDSLYVQGKRRYDRKQS 48


>tr|A9RQN3|A9RQN3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_177351 PE=3 SV=1
          Length = 105

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 32/48 (66%), Positives = 32/48 (66%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVNVP              HTLHKVTQYKKGKDSLY QGKRRYDRK S
Sbjct: 1   MVNVPKTKKSFCPGKACKKHTLHKVTQYKKGKDSLYAQGKRRYDRKQS 48


>tr|A9RD45|A9RD45_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_109414 PE=3 SV=1
          Length = 105

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 32/48 (66%), Positives = 32/48 (66%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVNVP              HTLHKVTQYKKGKDSLY QGKRRYDRK S
Sbjct: 1   MVNVPKTKKSFCPGKSCKKHTLHKVTQYKKGKDSLYAQGKRRYDRKQS 48


>tr|Q86EU7|Q86EU7_SCHJA Clone ZZD1408 mRNA sequence OS=Schistosoma
           japonicum PE=3 SV=1
          Length = 106

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 31/48 (64%), Positives = 32/48 (66%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVN+P              HTLHKVTQYKKGKDSLY QGKRRYDRK S
Sbjct: 1   MVNIPKTRNTFCKSSKCKKHTLHKVTQYKKGKDSLYAQGKRRYDRKQS 48


>tr|B8LKF1|B8LKF1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 105

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 32/48 (66%), Positives = 32/48 (66%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVNVP              HTLHKVTQYKKGKDSL VQGKRRYDRK S
Sbjct: 1   MVNVPKTKKTFCKNKACKKHTLHKVTQYKKGKDSLAVQGKRRYDRKQS 48


>tr|A9RFG1|A9RFG1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_129054 PE=3 SV=1
          Length = 105

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 31/47 (65%), Positives = 31/47 (65%)
 Frame = +1

Query: 40  VNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           VNVP              HTLHKVTQYKKGKDSLY QGKRRYDRK S
Sbjct: 2   VNVPKTKKSFCPGKACKKHTLHKVTQYKKGKDSLYAQGKRRYDRKQS 48


>tr|A9UDU7|A9UDU7_9BILA Putative 60S ribosomal protein RPL36A
           OS=Flustra foliacea PE=3 SV=1
          Length = 106

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/46 (65%), Positives = 31/46 (67%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRK 174
           MVNVP              HTLHKVTQYKKGKDS+Y QGKRRYDRK
Sbjct: 1   MVNVPKQRKTFCKGRKCKKHTLHKVTQYKKGKDSVYAQGKRRYDRK 46


>tr|A8UFM0|A8UFM0_AREMA Ribosomal protein rpl36a OS=Arenicola marina
           PE=3 SV=1
          Length = 106

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/48 (62%), Positives = 32/48 (66%)
 Frame = +1

Query: 37  MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           MVNVP              HTLHKVTQYKKG+DS+Y QGKRRYDRK S
Sbjct: 1   MVNVPKQRKTFCKGKKCRKHTLHKVTQYKKGRDSIYAQGKRRYDRKQS 48


>tr|Q94ER6|Q94ER6_BRARP 60S ribosomal protein L144 (Fragment)
           OS=Brassica rapa subsp. pekinensis PE=2 SV=1
          Length = 119

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 31/50 (62%), Positives = 32/50 (64%)
 Frame = +1

Query: 31  AAMVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKRRYDRKLS 180
           A MVN+P              HTLHKVTQYKKGKDSL  QGKRRYDRK S
Sbjct: 13  AKMVNIPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQS 62


>tr|B5XCV1|B5XCV1_SALSA 60S ribosomal protein L36a OS=Salmo salar
           GN=RL36A PE=2 SV=1
          Length = 126

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 36/67 (53%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
 Frame = +1

Query: 10  LCCC-SKPAA---------MVNVPXXXXXXXXXXXXXXHTLHKVTQYKKGKDSLYVQGKR 159
           +CCC S PA          +VNVP              H LHKVTQYKKGKDSLY QGKR
Sbjct: 2   MCCCNSNPAQYERNRRFRHLVNVPKTRRTYCKKCKR--HQLHKVTQYKKGKDSLYAQGKR 59

Query: 160 RYDRKLS 180
           RYDRK S
Sbjct: 60  RYDRKQS 66