DK944321 |
Clone id |
YMU02A01NGRL0005_K23 |
Library |
YMU02 |
Length |
498 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_K23. 5' end sequence. |
Accession |
DK944321 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL469Contig1 |
Sequence |
ATGAGGAGGGAAAGCCACATAGAGGATGTGTATCCATGGCCAAGCGGATGAGGAGGGGTA AAAAGCCAGGCTGCGAATAAATTGAGACAGATTTCCATTGATGCCTTTACCATGGCCAGT GTTACCATCTCCCAAGCTGTTGTAAAGTTTTGGGTGCACAGTTGCAGACCAGCTGGGGTT GCATCTTCTCTTTGTATCATTCCTGAGCATGGGATCCTGCACTTTGACATAATTGTTGCT GCTGGAGGGATCGCACCCTGGAGGTGGCGCTTTCTAGTTTACTTCAACGATCGGGTGATA TTCAATTTGGAGACCAAGCATAGATAAACATGGTTGGTAGTTTGTGATTGAAGTTCTTGA TCGTTTTGCATCCACTTGTGCTACTCTTCTGGCTTTGGCTGTAGAAAGTGACTGATCGTC ATGGGGGTAAGCTTGTAAATTATGTGACAATAATCCCATTCAAATTCATTAAAAAAAAAA AAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5VWM3 |
Definition |
sp|Q5VWM3|PRA18_HUMAN PRAME family member 18 OS=Homo sapiens |
Align length |
68 |
Score (bit) |
31.6 |
E-value |
1.8 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944321|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_K23, 5' (470 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5VWM3|PRA18_HUMAN PRAME family member 18 OS=Homo sapiens GN=... 32 1.8 sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyost... 31 2.4 sp|A3QJZ6|PRA22_HUMAN PRAME family member 22 OS=Homo sapiens GN=... 31 2.4 sp|O94380|GPI16_SCHPO GPI transamidase component PIG-T homolog O... 31 3.1 sp|Q2U988|CD123_ASPOR Cell division cycle protein 123 OS=Aspergi... 30 5.3 sp|P09883|CEA9_ECOLX Colicin-E9 OS=Escherichia coli GN=col PE=1 ... 29 9.1 sp|P17999|CEA6_ECOLX Colicin-E6 OS=Escherichia coli PE=3 SV=1 29 9.1 sp|P00646|CEA3_ECOLX Colicin-E3 OS=Escherichia coli GN=ceaC PE=1... 29 9.1 sp|P04419|CEA2_ECOLX Colicin-E2 OS=Escherichia coli GN=col PE=1 ... 29 9.1 sp|Q9MZS8|CATD_SHEEP Cathepsin D (Fragment) OS=Ovis aries GN=CTS... 29 9.1 sp|Q10589|BST2_HUMAN Bone marrow stromal antigen 2 OS=Homo sapie... 29 9.1
>sp|Q5VWM3|PRA18_HUMAN PRAME family member 18 OS=Homo sapiens GN=PRAMEF18 PE=2 SV=1 Length = 479
Score = 31.6 bits (70), Expect = 1.8 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Frame = +1
Query: 88 QISIDAFTMASVTISQAVVKFWVHSCRPAGVASSLCIIPEHGILHFDI----IVAAGGIA 255 ++ ++AFT + + +V+ W C P G SL P+ ILH+ + + A + Sbjct: 38 RLFVEAFTSRRCEVLKVMVQAWPFPCLPLG---SLMKTPDLEILHYVVDGIDCLLAQKVR 94
Query: 256 PWRWRFLV 279 P RW+ V Sbjct: 95 PRRWKLQV 102
>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2 Length = 1335
Score = 31.2 bits (69), Expect = 2.4 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -3
Query: 267 PPPGCDPSSSNNYVKVQDPMLRNDTKRRCNPSWSATVHPKLYNSL 133 PP PSSS++ VKV +N+ N + + T P +N+L Sbjct: 125 PPSNSLPSSSSSKVKVNSLTSQNNNNNNSNTNTNMTTQPPTFNNL 169
>sp|A3QJZ6|PRA22_HUMAN PRAME family member 22 OS=Homo sapiens GN=PRAMEF22 PE=3 SV=2 Length = 479
Score = 31.2 bits (69), Expect = 2.4 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Frame = +1
Query: 97 IDAFTMASVTISQAVVKFWVHSCRPAGVASSLCIIPEHGILHFDI----IVAAGGIAPWR 264 ++AFT + + +V+ W C P G SL P+ ILH+ + + A + P R Sbjct: 41 VEAFTSRRCEVLKVMVQAWPFPCLPLG---SLMKTPDLEILHYVVDGIDCLLAQKVRPRR 97
Query: 265 WRFLV 279 W+ V Sbjct: 98 WKLQV 102
>sp|O94380|GPI16_SCHPO GPI transamidase component PIG-T homolog OS=Schizosaccharomyces pombe GN=SPBC1604.15 PE=2 SV=1 Length = 545
Score = 30.8 bits (68), Expect = 3.1 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 18/96 (18%) Frame = -3
Query: 447 SHNLQAYPHDDQSLSTAKARRVAQ--VDAKRS--RTSITNYQP--------------CLS 322 S ++ YP ++QSL++ K + Q VD +R+ R T +QP CL Sbjct: 217 SFSIDVYPSENQSLASVKMGIIIQAVVDVERNGRRKGKTTFQPPSEYCHDEDMDSLHCL- 275
Query: 321 MLGLQIEYHPIVEVN*KAPPPGCDPSSSNNYVKVQD 214 M G E+H + ++ K P C SS+ + V V + Sbjct: 276 MSGYSTEHHTVDDLFHKVPKERCLLSSTFSDVFVSN 311
>sp|Q2U988|CD123_ASPOR Cell division cycle protein 123 OS=Aspergillus oryzae GN=cdc123 PE=3 SV=1 Length = 413
Score = 30.0 bits (66), Expect = 5.3 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -1
Query: 461 EWDYCHIIYKLTPMTISHFLQPK-----PEE*HKWMQNDQELQSQTTNHVYLCLVSKLNI 297 EW+ H K T + + PK P++ WM ++Q +T N +YL L S I Sbjct: 101 EWEEIHTQIKTTISELGGIITPKLNWSAPKD-ATWMAATNDMQCRTPNDIYLLLKSSDFI 159
Query: 296 TRSLK 282 + L+ Sbjct: 160 SHDLE 164
>sp|P09883|CEA9_ECOLX Colicin-E9 OS=Escherichia coli GN=col PE=1 SV=4 Length = 582
Score = 29.3 bits (64), Expect = 9.1 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -3
Query: 141 NSLGDGNTGHGKGINGNLSQFIRSLAF-YPSSS 46 N G+GN+G G G GNLS +AF +P+ S Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS 96
>sp|P17999|CEA6_ECOLX Colicin-E6 OS=Escherichia coli PE=3 SV=1 Length = 551
Score = 29.3 bits (64), Expect = 9.1 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -3
Query: 141 NSLGDGNTGHGKGINGNLSQFIRSLAF-YPSSS 46 N G+GN+G G G GNLS +AF +P+ S Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS 96
>sp|P00646|CEA3_ECOLX Colicin-E3 OS=Escherichia coli GN=ceaC PE=1 SV=1 Length = 551
Score = 29.3 bits (64), Expect = 9.1 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -3
Query: 141 NSLGDGNTGHGKGINGNLSQFIRSLAF-YPSSS 46 N G+GN+G G G GNLS +AF +P+ S Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS 96
>sp|P04419|CEA2_ECOLX Colicin-E2 OS=Escherichia coli GN=col PE=1 SV=2 Length = 581
Score = 29.3 bits (64), Expect = 9.1 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -3
Query: 141 NSLGDGNTGHGKGINGNLSQFIRSLAF-YPSSS 46 N G+GN+G G G GNLS +AF +P+ S Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS 96
>sp|Q9MZS8|CATD_SHEEP Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1 Length = 365
Score = 29.3 bits (64), Expect = 9.1 Identities = 21/73 (28%), Positives = 32/73 (43%) Frame = -1
Query: 269 RHLQGAIPPAATIMSKCRIPCSGMIQREDATPAGLQLCTQNFTTAWEMVTLAMVKASMEI 90 R L AI I + IPC + T L+L +++T + E TL + +A + Sbjct: 282 RELHKAIGAVPLIQGEYMIPCEKVSSLPQVT---LKLGGKDYTLSPEDYTLKVSQAGTTV 338
Query: 89 CLNLFAAWLFTPP 51 CL+ F PP Sbjct: 339 CLSGFMGMDIPPP 351
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5EHY6 |
Definition |
tr|A5EHY6|A5EHY6_BRASB Non-ribosomal peptide synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) |
Align length |
50 |
Score (bit) |
36.2 |
E-value |
0.84 |
Report |
|