DK944321
Clone id YMU02A01NGRL0005_K23
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_K23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
ATGAGGAGGGAAAGCCACATAGAGGATGTGTATCCATGGCCAAGCGGATGAGGAGGGGTA
AAAAGCCAGGCTGCGAATAAATTGAGACAGATTTCCATTGATGCCTTTACCATGGCCAGT
GTTACCATCTCCCAAGCTGTTGTAAAGTTTTGGGTGCACAGTTGCAGACCAGCTGGGGTT
GCATCTTCTCTTTGTATCATTCCTGAGCATGGGATCCTGCACTTTGACATAATTGTTGCT
GCTGGAGGGATCGCACCCTGGAGGTGGCGCTTTCTAGTTTACTTCAACGATCGGGTGATA
TTCAATTTGGAGACCAAGCATAGATAAACATGGTTGGTAGTTTGTGATTGAAGTTCTTGA
TCGTTTTGCATCCACTTGTGCTACTCTTCTGGCTTTGGCTGTAGAAAGTGACTGATCGTC
ATGGGGGTAAGCTTGTAAATTATGTGACAATAATCCCATTCAAATTCATTAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5VWM3
Definition sp|Q5VWM3|PRA18_HUMAN PRAME family member 18 OS=Homo sapiens
Align length 68
Score (bit) 31.6
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944321|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_K23, 5'
(470 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5VWM3|PRA18_HUMAN PRAME family member 18 OS=Homo sapiens GN=... 32 1.8
sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyost... 31 2.4
sp|A3QJZ6|PRA22_HUMAN PRAME family member 22 OS=Homo sapiens GN=... 31 2.4
sp|O94380|GPI16_SCHPO GPI transamidase component PIG-T homolog O... 31 3.1
sp|Q2U988|CD123_ASPOR Cell division cycle protein 123 OS=Aspergi... 30 5.3
sp|P09883|CEA9_ECOLX Colicin-E9 OS=Escherichia coli GN=col PE=1 ... 29 9.1
sp|P17999|CEA6_ECOLX Colicin-E6 OS=Escherichia coli PE=3 SV=1 29 9.1
sp|P00646|CEA3_ECOLX Colicin-E3 OS=Escherichia coli GN=ceaC PE=1... 29 9.1
sp|P04419|CEA2_ECOLX Colicin-E2 OS=Escherichia coli GN=col PE=1 ... 29 9.1
sp|Q9MZS8|CATD_SHEEP Cathepsin D (Fragment) OS=Ovis aries GN=CTS... 29 9.1
sp|Q10589|BST2_HUMAN Bone marrow stromal antigen 2 OS=Homo sapie... 29 9.1

>sp|Q5VWM3|PRA18_HUMAN PRAME family member 18 OS=Homo sapiens
GN=PRAMEF18 PE=2 SV=1
Length = 479

Score = 31.6 bits (70), Expect = 1.8
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +1

Query: 88 QISIDAFTMASVTISQAVVKFWVHSCRPAGVASSLCIIPEHGILHFDI----IVAAGGIA 255
++ ++AFT + + +V+ W C P G SL P+ ILH+ + + A +
Sbjct: 38 RLFVEAFTSRRCEVLKVMVQAWPFPCLPLG---SLMKTPDLEILHYVVDGIDCLLAQKVR 94

Query: 256 PWRWRFLV 279
P RW+ V
Sbjct: 95 PRRWKLQV 102


>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97
OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2
Length = 1335

Score = 31.2 bits (69), Expect = 2.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3

Query: 267 PPPGCDPSSSNNYVKVQDPMLRNDTKRRCNPSWSATVHPKLYNSL 133
PP PSSS++ VKV +N+ N + + T P +N+L
Sbjct: 125 PPSNSLPSSSSSKVKVNSLTSQNNNNNNSNTNTNMTTQPPTFNNL 169


>sp|A3QJZ6|PRA22_HUMAN PRAME family member 22 OS=Homo sapiens
GN=PRAMEF22 PE=3 SV=2
Length = 479

Score = 31.2 bits (69), Expect = 2.4
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1

Query: 97 IDAFTMASVTISQAVVKFWVHSCRPAGVASSLCIIPEHGILHFDI----IVAAGGIAPWR 264
++AFT + + +V+ W C P G SL P+ ILH+ + + A + P R
Sbjct: 41 VEAFTSRRCEVLKVMVQAWPFPCLPLG---SLMKTPDLEILHYVVDGIDCLLAQKVRPRR 97

Query: 265 WRFLV 279
W+ V
Sbjct: 98 WKLQV 102


>sp|O94380|GPI16_SCHPO GPI transamidase component PIG-T homolog
OS=Schizosaccharomyces pombe GN=SPBC1604.15 PE=2 SV=1
Length = 545

Score = 30.8 bits (68), Expect = 3.1
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 18/96 (18%)
Frame = -3

Query: 447 SHNLQAYPHDDQSLSTAKARRVAQ--VDAKRS--RTSITNYQP--------------CLS 322
S ++ YP ++QSL++ K + Q VD +R+ R T +QP CL
Sbjct: 217 SFSIDVYPSENQSLASVKMGIIIQAVVDVERNGRRKGKTTFQPPSEYCHDEDMDSLHCL- 275

Query: 321 MLGLQIEYHPIVEVN*KAPPPGCDPSSSNNYVKVQD 214
M G E+H + ++ K P C SS+ + V V +
Sbjct: 276 MSGYSTEHHTVDDLFHKVPKERCLLSSTFSDVFVSN 311


>sp|Q2U988|CD123_ASPOR Cell division cycle protein 123
OS=Aspergillus oryzae GN=cdc123 PE=3 SV=1
Length = 413

Score = 30.0 bits (66), Expect = 5.3
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -1

Query: 461 EWDYCHIIYKLTPMTISHFLQPK-----PEE*HKWMQNDQELQSQTTNHVYLCLVSKLNI 297
EW+ H K T + + PK P++ WM ++Q +T N +YL L S I
Sbjct: 101 EWEEIHTQIKTTISELGGIITPKLNWSAPKD-ATWMAATNDMQCRTPNDIYLLLKSSDFI 159

Query: 296 TRSLK 282
+ L+
Sbjct: 160 SHDLE 164


>sp|P09883|CEA9_ECOLX Colicin-E9 OS=Escherichia coli GN=col PE=1
SV=4
Length = 582

Score = 29.3 bits (64), Expect = 9.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3

Query: 141 NSLGDGNTGHGKGINGNLSQFIRSLAF-YPSSS 46
N G+GN+G G G GNLS +AF +P+ S
Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS 96


>sp|P17999|CEA6_ECOLX Colicin-E6 OS=Escherichia coli PE=3 SV=1
Length = 551

Score = 29.3 bits (64), Expect = 9.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3

Query: 141 NSLGDGNTGHGKGINGNLSQFIRSLAF-YPSSS 46
N G+GN+G G G GNLS +AF +P+ S
Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS 96


>sp|P00646|CEA3_ECOLX Colicin-E3 OS=Escherichia coli GN=ceaC PE=1
SV=1
Length = 551

Score = 29.3 bits (64), Expect = 9.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3

Query: 141 NSLGDGNTGHGKGINGNLSQFIRSLAF-YPSSS 46
N G+GN+G G G GNLS +AF +P+ S
Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS 96


>sp|P04419|CEA2_ECOLX Colicin-E2 OS=Escherichia coli GN=col PE=1
SV=2
Length = 581

Score = 29.3 bits (64), Expect = 9.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3

Query: 141 NSLGDGNTGHGKGINGNLSQFIRSLAF-YPSSS 46
N G+GN+G G G GNLS +AF +P+ S
Sbjct: 64 NGGGNGNSGGGSGTGGNLSAVAAPVAFGFPALS 96


>sp|Q9MZS8|CATD_SHEEP Cathepsin D (Fragment) OS=Ovis aries GN=CTSD
PE=1 SV=1
Length = 365

Score = 29.3 bits (64), Expect = 9.1
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = -1

Query: 269 RHLQGAIPPAATIMSKCRIPCSGMIQREDATPAGLQLCTQNFTTAWEMVTLAMVKASMEI 90
R L AI I + IPC + T L+L +++T + E TL + +A +
Sbjct: 282 RELHKAIGAVPLIQGEYMIPCEKVSSLPQVT---LKLGGKDYTLSPEDYTLKVSQAGTTV 338

Query: 89 CLNLFAAWLFTPP 51
CL+ F PP
Sbjct: 339 CLSGFMGMDIPPP 351


tr_hit_id A5EHY6
Definition tr|A5EHY6|A5EHY6_BRASB Non-ribosomal peptide synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
Align length 50
Score (bit) 36.2
E-value 0.84
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944321|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_K23, 5'
(470 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5EHY6|A5EHY6_BRASB Non-ribosomal peptide synthase OS=Bradyrh... 36 0.84
tr|B2AT81|B2AT81_PODAN Predicted CDS Pa_1_14970 OS=Podospora ans... 33 5.5
tr|Q6AMZ8|Q6AMZ8_DESPS Putative uncharacterized protein OS=Desul... 33 7.1
tr|B0KUR1|B0KUR1_PSEPG YD repeat protein OS=Pseudomonas putida (... 33 7.1
tr|P96287|P96287_MYCTU POSSIBLE TRANSPOSASE FOR INSERTION SEQUEN... 33 9.3
tr|A5U6V2|A5U6V2_MYCTA ISMt3 transposase B2 OS=Mycobacterium tub... 33 9.3
tr|A5WRJ6|A5WRJ6_MYCTF Transposase OS=Mycobacterium tuberculosis... 33 9.3
tr|A6RGP8|A6RGP8_AJECN Predicted protein OS=Ajellomyces capsulat... 33 9.3

>tr|A5EHY6|A5EHY6_BRASB Non-ribosomal peptide synthase
OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=BBta_3701 PE=3 SV=1
Length = 3962

Score = 36.2 bits (82), Expect = 0.84
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -3

Query: 249 PSSSNNYVKVQDPMLRNDTKRRCNPSWSATVHPKLYNSLGDGNTGHGKGI 100
P + + + DPML D++ C+P+ A P LY + G+TG KG+
Sbjct: 3220 PQFTGEVIALDDPML--DSETACDPTREAVADPLLYIAYTSGSTGRPKGV 3267


>tr|B2AT81|B2AT81_PODAN Predicted CDS Pa_1_14970 OS=Podospora
anserina PE=4 SV=1
Length = 570

Score = 33.5 bits (75), Expect = 5.5
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -3

Query: 267 PPPGCDPSSSNNYVKVQDPMLRNDTKRRCNPSWSATVHPKLYNSL--GDGNTGHGKGING 94
PPPG N P L N S S V+ + N+L G+GN+ H G NG
Sbjct: 495 PPPGL---GLNRAGFSSSPGLSNPYSSPTYSSPSTDVYDQWNNNLMYGNGNSAHMVGANG 551

Query: 93 NLSQFIRSLAFYPS 52
N + S A YPS
Sbjct: 552 NNGYMMGSSATYPS 565


>tr|Q6AMZ8|Q6AMZ8_DESPS Putative uncharacterized protein
OS=Desulfotalea psychrophila GN=DP1547 PE=4 SV=1
Length = 380

Score = 33.1 bits (74), Expect = 7.1
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -3

Query: 177 PSWSATVHPKLYNSLGDGNTGHGKGINGNLSQFIRSLAFYPSSSAWPWIHILYVAFPPH 1
P WS V L+ + DG G G GI+ S + S+AF + W +L + F H
Sbjct: 270 PIWSLNVQELLWKTFKDGGGGFGGGISAMPSMHV-SMAFLFALLGWRTSRVLGIVFTLH 327


>tr|B0KUR1|B0KUR1_PSEPG YD repeat protein OS=Pseudomonas putida
(strain GB-1) GN=PputGB1_1461 PE=4 SV=1
Length = 1312

Score = 33.1 bits (74), Expect = 7.1
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -3

Query: 258 GCDPSSSNNYVKVQDPMLRNDTKRRCNPSWSATVHPKL-YNSLGDGNTGHGKGINGNLSQ 82
G DP + + + P+LR D A KL YNS+G G+ G+G+G + NLS
Sbjct: 21 GVDPRTGQYGLSIALPVLRGDYLG------GAEFPLKLSYNSMGAGDFGYGQGWDINLSS 74

Query: 81 FIRSLAFYPS 52
FI YP+
Sbjct: 75 FIEDA--YPA 82


>tr|P96287|P96287_MYCTU POSSIBLE TRANSPOSASE FOR INSERTION SEQUENCE
ELEMENT IS1533 OS=Mycobacterium tuberculosis GN=Rv2944
PE=4 SV=2
Length = 238

Score = 32.7 bits (73), Expect = 9.3
Identities = 24/78 (30%), Positives = 39/78 (50%)
Frame = -1

Query: 248 PPAATIMSKCRIPCSGMIQREDATPAGLQLCTQNFTTAWEMVTLAMVKASMEICLNLFAA 69
PPA + KC+ P S M+ R + P +L ++ W+ TL+M+ AS +++A
Sbjct: 23 PPACS--GKCQ-PGSPMVVRAASAPPASRLGSR-----WKSSTLSMLVASNATPSHIWAP 74

Query: 68 WLFTPPHPLGHGYTSSMW 15
W+ +PP TS W
Sbjct: 75 WISSPP-----AITSCFW 87


>tr|A5U6V2|A5U6V2_MYCTA ISMt3 transposase B2 OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=MRA_2971
PE=4 SV=1
Length = 238

Score = 32.7 bits (73), Expect = 9.3
Identities = 24/78 (30%), Positives = 39/78 (50%)
Frame = -1

Query: 248 PPAATIMSKCRIPCSGMIQREDATPAGLQLCTQNFTTAWEMVTLAMVKASMEICLNLFAA 69
PPA + KC+ P S M+ R + P +L ++ W+ TL+M+ AS +++A
Sbjct: 23 PPACS--GKCQ-PGSPMVVRAASAPPASRLGSR-----WKSSTLSMLVASNATPSHIWAP 74

Query: 68 WLFTPPHPLGHGYTSSMW 15
W+ +PP TS W
Sbjct: 75 WISSPP-----AITSCFW 87


>tr|A5WRJ6|A5WRJ6_MYCTF Transposase OS=Mycobacterium tuberculosis
(strain F11) GN=TBFG_12958 PE=4 SV=1
Length = 238

Score = 32.7 bits (73), Expect = 9.3
Identities = 24/78 (30%), Positives = 39/78 (50%)
Frame = -1

Query: 248 PPAATIMSKCRIPCSGMIQREDATPAGLQLCTQNFTTAWEMVTLAMVKASMEICLNLFAA 69
PPA + KC+ P S M+ R + P +L ++ W+ TL+M+ AS +++A
Sbjct: 23 PPACS--GKCQ-PGSPMVVRAASAPPASRLGSR-----WKSSTLSMLVASNATPSHIWAP 74

Query: 68 WLFTPPHPLGHGYTSSMW 15
W+ +PP TS W
Sbjct: 75 WISSPP-----AITSCFW 87


>tr|A6RGP8|A6RGP8_AJECN Predicted protein OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=HCAG_08815 PE=4 SV=1
Length = 932

Score = 32.7 bits (73), Expect = 9.3
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Frame = +1

Query: 37 WPSG*GGVKSQAANKLRQISIDAFTM-----ASVTISQAVVKFWVHSCRPAGVA--SSLC 195
WP + QAA++LR +S + F A + VH P ++ S
Sbjct: 836 WPESASTFQQQAADRLRIMSYNLFAKYLGENAGIHEESRQPSLVVHGATPQSISSVSPEH 895

Query: 196 IIPEHGILHFDIIVAAGGIAPWRW 267
+ P H +L D I+ GG W W
Sbjct: 896 LFPGHSVL-VDEIIGFGGFEDWDW 918