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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944324
Clone id YMU02A01NGRL0005_L02
Library
Length 316
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_L02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCACTTCATTTTTATCGATGGCAAAAATTAGATACTACATCAATTTAGCCAATTGAGTAA
TAAGGGAGAGAGAGGGATTCGAACCCTCGGTACATAAAAATTGTACAACGGATTAGCAAT
CCGACACTTTAAACCCCTCGGCCATCTCTCCTAAATACTTGGGGTGCCTGCGGCCTCACT
CAATTTTAACACTAATTTAGTGTGTAAGTCTATAATAACAAAGTATTAATGTAGGAATAT
AAACTTAATTAAACATCGGAGTCAAATTTTGTACAATCTTTGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944324|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_L02, 5'
         (282 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q3HKB2
Definition tr|Q3HKB2|Q3HKB2_TOBAC Putative uncharacterized protein OS=Nicotiana tabacum
Align length 29
Score (bit) 47.0
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944324|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_L02, 5'
         (282 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3HKB2|Q3HKB2_TOBAC Putative uncharacterized protein OS=Nicot...    47   5e-04
tr|Q33C54|Q33C54_NICTO Putative uncharacterized protein OS=Nicot...    47   5e-04

>tr|Q3HKB2|Q3HKB2_TOBAC Putative uncharacterized protein
           OS=Nicotiana tabacum PE=4 SV=1
          Length = 90

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 22/29 (75%), Positives = 23/29 (79%)
 Frame = +2

Query: 65  GERGIRTLGT*KLYNGLAIRHFKPLGHLS 151
           G+RGIRTLGT   YNGLAIR F PL HLS
Sbjct: 54  GKRGIRTLGTINSYNGLAIRRFSPLSHLS 82


>tr|Q33C54|Q33C54_NICTO Putative uncharacterized protein
           OS=Nicotiana tomentosiformis PE=4 SV=1
          Length = 90

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 22/29 (75%), Positives = 23/29 (79%)
 Frame = +2

Query: 65  GERGIRTLGT*KLYNGLAIRHFKPLGHLS 151
           G+RGIRTLGT   YNGLAIR F PL HLS
Sbjct: 54  GKRGIRTLGTINSYNGLAIRRFSPLSHLS 82