| DK944329 |
| Clone id |
YMU02A01NGRL0005_L08 |
| Library |
YMU02 |
| Length |
506 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_L08. 5' end sequence. |
| Accession |
DK944329 |
| Tissue type |
young leaves |
| Developmental stage |
sporophyte |
| Contig ID |
- |
| Sequence |
ATATTAGAAATTTGGTTTCAACGCCTTATTATTAACTAATAATATTTGATTCGGTCAACC
CGACTAACTAAAAATCGAAGGTTCATAACGGAATCCGAGAGTTCCTCTCGATAGGACCGC
TCAATTTATTTCCCAATTAATGATTTGAACTACTAATACGGAAGTAAACATTCTTGCGTT
TGTAGCCACTGCACTTTTCATTCTAATTCCGACAGCTTTTCTACTCATTCTTTACATTCA
GACGGCCGCCCAAAATAATGGGTAGTTATCAATTACTCTGATTGGTAACTTAGTAGATTT
CTTGGTAAGTTAGTAAATCGCGGAAATGAGATCCACTCACTGAGCAGCCATGGGTTGAAA
ACTCAATCTGTTCTACTTACATTTCTATTCTAGAAGAAAGAGATAGTCACTAAAACGGTA
TCAAGCGAAACATTCGTAACTATAAGCTTAGCTGCATATCAACTGAAAATACAAGCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q85FM6 |
| Definition |
sp|Q85FM6|PSBM_ADICA Photosystem II reaction center protein M OS=Adiantum capillus-veneris |
| Align length |
34 |
| Score (bit) |
67.0 |
| E-value |
4.0e-11 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B8LIR5 |
| Definition |
tr|B8LIR5|B8LIR5_9MARC Photosystem II protein M OS=Metzgeria conjugata |
| Align length |
33 |
| Score (bit) |
58.9 |
| E-value |
1.0e-07 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944329|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_L08, 5'
(476 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|B8LIR5|B8LIR5_9MARC Photosystem II protein M OS=Metzgeria con... 59 1e-07
tr|A7NTH1|A7NTH1_VITVI Chromosome chr18 scaffold_1, whole genome... 59 1e-07
tr|B3TN40|B3TN40_BRADI PSII low MW protein OS=Brachypodium dista... 59 2e-07
tr|A9QC61|A9QC61_TRACE Photosystem II protein M (Fragment) OS=Tr... 59 2e-07
tr|A7R968|A7R968_VITVI Chromosome undetermined scaffold_3413, wh... 59 2e-07
tr|B8Y2W2|B8Y2W2_FESAR Photosystem II protein M OS=Festuca arund... 57 5e-07
tr|B6VJZ0|B6VJZ0_VITVI PSII M protein OS=Vitis vinifera GN=psbM ... 57 5e-07
tr|Q7G678|Q7G678_ORYSJ Putative PSII low MW protein from chromos... 57 6e-07
tr|Q7FN80|Q7FN80_QUEPE Photosystem II polypeptide M OS=Quercus p... 57 6e-07
tr|Q5IBK7|Q5IBK7_9LAMI Photosystem II protein M OS=Plantago aust... 57 6e-07
tr|Q5IBK5|Q5IBK5_9LAMI Photosystem II protein M OS=Plantago coro... 57 6e-07
tr|Q5IBK1|Q5IBK1_9LAMI Photosystem II protein M OS=Plantago medi... 57 6e-07
tr|Q5IBJ9|Q5IBJ9_9LAMI Photosystem II protein M OS=Plantago rigi... 57 6e-07
tr|Q5IBJ7|Q5IBJ7_9LAMI Photosystem II protein M OS=Plantago ruge... 57 6e-07
tr|Q4FFU2|Q4FFU2_ACOAM Photosystem II protein M (Fragment) OS=Ac... 57 6e-07
tr|Q4FFU0|Q4FFU0_NUPAD Photosystem II protein M (Fragment) OS=Nu... 57 6e-07
tr|Q4FFT9|Q4FFT9_RANMC Photosystem II protein M (Fragment) OS=Ra... 57 6e-07
tr|Q4FFT8|Q4FFT8_TYPLA Photosystem II protein M (Fragment) OS=Ty... 57 6e-07
tr|Q45Z01|Q45Z01_9ERIC PsbM OS=Symplocos chinensis GN=psbM PE=4 ... 57 6e-07
tr|Q45YZ9|Q45YZ9_9ERIC PsbM OS=Symplocos paniculata GN=psbM PE=4... 57 6e-07
tr|Q45YZ5|Q45YZ5_9ERIC PsbM OS=Symplocos celastrinea GN=psbM PE=... 57 6e-07
tr|Q45YY5|Q45YY5_9ERIC PsbM OS=Symplocos pentandra GN=psbM PE=4 ... 57 6e-07
tr|Q45YY3|Q45YY3_9ERIC PsbM OS=Symplocos tinctoria GN=psbM PE=4 ... 57 6e-07
tr|Q45YX7|Q45YX7_9ERIC PsbM OS=Symplocos lanata GN=psbM PE=4 SV=1 57 6e-07
tr|Q45YX3|Q45YX3_9ERIC PsbM OS=Symplocos austin-smithii GN=psbM ... 57 6e-07
tr|Q45YW9|Q45YW9_9ERIC PsbM OS=Symplocos austromexicana GN=psbM ... 57 6e-07
tr|Q45YW7|Q45YW7_9ERIC PsbM OS=Symplocos berteroi GN=psbM PE=4 SV=1 57 6e-07
tr|Q45YW5|Q45YW5_9ERIC PsbM OS=Symplocos breedlovei GN=psbM PE=4... 57 6e-07
tr|Q45YW3|Q45YW3_9ERIC PsbM OS=Symplocos citrea GN=psbM PE=4 SV=1 57 6e-07
tr|Q45YW1|Q45YW1_9ERIC PsbM OS=Symplocos coccinea GN=psbM PE=4 SV=1 57 6e-07
>tr|B8LIR5|B8LIR5_9MARC Photosystem II protein M OS=Metzgeria
conjugata GN=psbM PE=4 SV=1
Length = 34
Score = 58.9 bits (141), Expect = 1e-07
Identities = 28/33 (84%), Positives = 32/33 (96%)
Frame = +2
Query: 161 EVNILAFVATALFILIPTAFLLILYIQTAAQNN 259
EVNI AF+ATALFILIPTAFLLILY++TA+QNN
Sbjct: 2 EVNISAFIATALFILIPTAFLLILYVRTASQNN 34
>tr|A7NTH1|A7NTH1_VITVI Chromosome chr18 scaffold_1, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00014664001
PE=4 SV=1
Length = 34
Score = 58.9 bits (141), Expect = 1e-07
Identities = 27/33 (81%), Positives = 32/33 (96%)
Frame = +2
Query: 161 EVNILAFVATALFILIPTAFLLILYIQTAAQNN 259
EVNILAF+ATALFIL+PTAFLLI+YI+T +QNN
Sbjct: 2 EVNILAFIATALFILVPTAFLLIIYIKTVSQNN 34
>tr|B3TN40|B3TN40_BRADI PSII low MW protein OS=Brachypodium
distachyon GN=psbM PE=4 SV=1
Length = 34
Score = 58.5 bits (140), Expect = 2e-07
Identities = 26/33 (78%), Positives = 32/33 (96%)
Frame = +2
Query: 161 EVNILAFVATALFILIPTAFLLILYIQTAAQNN 259
EVNILAF+ATALFIL+PTAFLLI+Y++T +QNN
Sbjct: 2 EVNILAFIATALFILVPTAFLLIIYVKTVSQNN 34
>tr|A9QC61|A9QC61_TRACE Photosystem II protein M (Fragment)
OS=Trachelium caeruleum GN=psbM PE=4 SV=1
Length = 34
Score = 58.5 bits (140), Expect = 2e-07
Identities = 26/33 (78%), Positives = 32/33 (96%)
Frame = +2
Query: 161 EVNILAFVATALFILIPTAFLLILYIQTAAQNN 259
EVNILAF+ATALFIL+PTAFLLI+Y++T +QNN
Sbjct: 2 EVNILAFIATALFILVPTAFLLIIYVKTVSQNN 34
>tr|A7R968|A7R968_VITVI Chromosome undetermined scaffold_3413, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00012744001 PE=4 SV=1
Length = 34
Score = 58.5 bits (140), Expect = 2e-07
Identities = 26/33 (78%), Positives = 32/33 (96%)
Frame = +2
Query: 161 EVNILAFVATALFILIPTAFLLILYIQTAAQNN 259
EVNILAF+ATALFIL+PTAFLLI+Y++T +QNN
Sbjct: 2 EVNILAFIATALFILVPTAFLLIIYVKTVSQNN 34
>tr|B8Y2W2|B8Y2W2_FESAR Photosystem II protein M OS=Festuca
arundinacea GN=psbM PE=4 SV=1
Length = 34
Score = 57.0 bits (136), Expect = 5e-07
Identities = 26/33 (78%), Positives = 32/33 (96%)
Frame = +2
Query: 161 EVNILAFVATALFILIPTAFLLILYIQTAAQNN 259
EVNILAF+ATALFILIPTAFLLI+Y++T +QN+
Sbjct: 2 EVNILAFIATALFILIPTAFLLIIYVKTVSQND 34
>tr|B6VJZ0|B6VJZ0_VITVI PSII M protein OS=Vitis vinifera GN=psbM
PE=4 SV=1
Length = 34
Score = 57.0 bits (136), Expect = 5e-07
Identities = 25/33 (75%), Positives = 31/33 (93%)
Frame = +2
Query: 161 EVNILAFVATALFILIPTAFLLILYIQTAAQNN 259
EVNILAF+ATALFIL+PTAFL I+Y++T +QNN
Sbjct: 2 EVNILAFIATALFILVPTAFLFIIYVKTVSQNN 34
>tr|Q7G678|Q7G678_ORYSJ Putative PSII low MW protein from chromosome
10 chloroplast insertion OS=Oryza sativa subsp. japonica
GN=OSJNAb0075K12.10 PE=4 SV=1
Length = 34
Score = 56.6 bits (135), Expect = 6e-07
Identities = 25/33 (75%), Positives = 32/33 (96%)
Frame = +2
Query: 161 EVNILAFVATALFILIPTAFLLILYIQTAAQNN 259
EVNILAF+ATALFIL+PTAFLLI+Y++T +QN+
Sbjct: 2 EVNILAFIATALFILVPTAFLLIIYVKTVSQND 34
>tr|Q7FN80|Q7FN80_QUEPE Photosystem II polypeptide M OS=Quercus
petraea GN=psbM PE=4 SV=1
Length = 34
Score = 56.6 bits (135), Expect = 6e-07
Identities = 25/33 (75%), Positives = 32/33 (96%)
Frame = +2
Query: 161 EVNILAFVATALFILIPTAFLLILYIQTAAQNN 259
EVNILAF+ATALFIL+PTAFLLI+Y++T +QN+
Sbjct: 2 EVNILAFIATALFILVPTAFLLIIYVKTVSQND 34
>tr|Q5IBK7|Q5IBK7_9LAMI Photosystem II protein M OS=Plantago
australis GN=psbM PE=4 SV=1
Length = 34
Score = 56.6 bits (135), Expect = 6e-07
Identities = 25/33 (75%), Positives = 32/33 (96%)
Frame = +2
Query: 161 EVNILAFVATALFILIPTAFLLILYIQTAAQNN 259
EVNILAF+ATALFIL+PTAFLLI+Y++T +QN+
Sbjct: 2 EVNILAFIATALFILVPTAFLLIIYVKTVSQND 34
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