DK944342 |
Clone id |
YMU02A01NGRL0005_M03 |
Library |
YMU02 |
Length |
359 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_M03. 5' end sequence. |
Accession |
DK944342 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1Contig2 |
Sequence |
GAGAAGCAGACAAGAGACAACCCGGCGAACTGAAACATCTTAGTAGCCGGAGGAGGAAAA AGCAAAAGCGATTCCCCTAGTAACGGCGAGTGAAACGGGAAGAGCCTAAACCGTGAAGAC GGGGTTGTGGGAGAGTGATGAGGGCTTCGTTTTACTAGGCGAAGCAGTTGAGTGCTGCAC CCCAGATGGTGATAGTCCAGTAGCCGGAAGTACAGCTAGCTCACGCTCCAACCCAAGTAG CATGGGGCACGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGGCTAAATATTC CTGAGTGACCGATAGCGAAGCAGTACCGTGAAAAATAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LSL6 |
Definition |
sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana |
Align length |
28 |
Score (bit) |
32.7 |
E-value |
0.59 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A6H5B3 |
Definition |
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata |
Align length |
54 |
Score (bit) |
89.0 |
E-value |
1.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944342|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_M03, 5' (330 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ... 89 1e-16 tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16 tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16 tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 89 1e-16 tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag... 75 2e-12 tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1 54 4e-10 tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh... 64 3e-09 tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who... 63 6e-09 tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome... 52 7e-09 tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 58 2e-07 tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geoba... 47 2e-06 tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo... 52 1e-05 tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne... 52 2e-05 tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo... 50 4e-05 tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo... 50 4e-05 tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen... 50 4e-05 tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri... 49 1e-04 tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio... 49 1e-04 tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri... 49 1e-04 tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche... 49 2e-04 tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi... 48 3e-04 tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh... 46 0.001 tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O... 38 0.001 tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul... 45 0.002 tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 44 0.003 tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea... 44 0.005 tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte... 43 0.007 tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep... 43 0.009 tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep... 43 0.009 tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen... 43 0.009
>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 79
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +2
Query: 167 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 328 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 23 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76
>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 87
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +2
Query: 167 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 328 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 29 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82
>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 90
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +2
Query: 167 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 328 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 32 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85
>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=Vigna unguiculata GN=rrn23 PE=2 SV=1 Length = 85
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/54 (75%), Positives = 46/54 (85%) Frame = +2
Query: 167 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 328 +ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 27 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80
>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1 Length = 52
Score = 74.7 bits (182), Expect = 2e-12 Identities = 35/47 (74%), Positives = 40/47 (85%) Frame = +2
Query: 188 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 328 G+SPV+ S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP Sbjct: 1 GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47
>tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1 Length = 124
Score = 54.3 bits (129), Expect(2) = 4e-10 Identities = 28/36 (77%), Positives = 28/36 (77%) Frame = -2
Query: 113 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVC 6 RFRL PF SPLL ESLLL P ATKMFQFA LSL C Sbjct: 45 RFRLLPFRSPLLRESLLLSIPLATKMFQFARLSLAC 80
Score = 33.5 bits (75), Expect(2) = 4e-10 Identities = 17/23 (73%), Positives = 19/23 (82%) Frame = -1
Query: 243 MLLGLERELAVLPATGLSPSGVQ 175 MLLGLER+ +L ATGLSPS VQ Sbjct: 1 MLLGLERKPMMLSATGLSPSRVQ 23
>tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, whole genome shotgun sequence (Fragment) OS=Vitis vinifera GN=GSVIVT00011927001 PE=4 SV=1 Length = 60
Score = 64.3 bits (155), Expect = 3e-09 Identities = 33/59 (55%), Positives = 39/59 (66%) Frame = +2
Query: 98 GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 274 G A VKTGLWES++ LL EA ECCT DG+SPVA S S S+ SSMGH + +R Sbjct: 2 GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQSSMGHEMPKKEKR 60
>tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00010999001 PE=4 SV=1 Length = 73
Score = 63.2 bits (152), Expect = 6e-09 Identities = 32/59 (54%), Positives = 39/59 (66%) Frame = +2
Query: 98 GRA*TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQR 274 G A VKTGLWES++ LL EA ECCT DG+SPVA S S S+ +SMGH + +R Sbjct: 2 GAAQIVKTGLWESNKSVTLLDEAEECCTLDGESPVAESITSLCSDQNSMGHEMPKKEKR 60
>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001 PE=4 SV=1 Length = 390
Score = 51.6 bits (122), Expect(2) = 7e-09 Identities = 23/31 (74%), Positives = 24/31 (77%) Frame = -3
Query: 328 RYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 236 RY FAI H +FSL RWS LIHTGF VPHAT Sbjct: 242 RYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272
Score = 32.0 bits (71), Expect(2) = 7e-09 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = -1
Query: 219 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 112 L +L ATG SPS VQH SHNP+FT Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309
>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 Length = 44
Score = 58.2 bits (139), Expect = 2e-07 Identities = 27/35 (77%), Positives = 28/35 (80%) Frame = -3
Query: 328 RYCFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 224 RY FAIGH G+FSL RWS LIHTGF VPHAT V A Sbjct: 10 RYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44
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