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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944350
Clone id YMU02A01NGRL0005_M15
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_M15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTCTCAGCCGGGCTTGCTACTTCTTACTGCGAGCCATGGCAGCTGCGATGTCCACATCC
CTATCTACGATTTCTTCGTCTTTAATCGGGCAGTCACCGGATGCTACAAAGTTGAGAGCT
CCAGCGCGAGCCATTGCAGGCCTTCCAGCTTTCCCAACTTTTCACATCTCGAACTCCTCA
CAAAGGCAAGAAAAGAAGGGGAGTTCTGCAGGTGAACAGGTGGCATTGCCTGCTGCAGTG
CTTGTGGCTGCGGTTGCGCAAGGGGGGTCTGCGATTGCCTTGGTGGATGATCGGCTGTCA
ACGGAGGGTACTGGCCTTGGTCTTGGAGTTAGCAATCCTTTGCTCATCTGGATCCTCCTT
GGTGTTGCAACCCTAATCTGGGCCCTTTTCTTAGTATATTCGTCCCGCCTCCCCCCTGGC
GATGATGACTCGGGTCTCTCGTTGTAGGGCTGCCTCCATGCATGTGCCCTTCAATTGCTT
TGTATGANATGCATAGACTGTGAAAACTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5ZBY9
Definition sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica
Align length 58
Score (bit) 74.3
E-value 3.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944350|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_M15, 5'
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein, c...    74   3e-13
sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, c...    72   2e-12
sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein, c...    70   4e-12
sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, c...    52   2e-06
sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein (F...    35   0.20 
sp|Q8ZPK5|CLCB_SALTY Voltage-gated ClC-type chloride channel clc...    27   2.1  
sp|Q8Z6Y0|CLCB_SALTI Voltage-gated ClC-type chloride channel clc...    27   3.4  
sp|Q3SNN8|NHAA_NITWN Na(+)/H(+) antiporter nhaA OS=Nitrobacter w...    30   8.5  
sp|Q5UNV3|YL690_MIMIV Uncharacterized protein L690 OS=Acanthamoe...    30   8.6  
sp|A8AGW0|CLCB_CITK8 Voltage-gated ClC-type chloride channel clc...    25   9.3  

>sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein,
           chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW
           PE=2 SV=1
          Length = 124

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 36/58 (62%), Positives = 46/58 (79%)
 Frame = +1

Query: 271 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           A+ALVD+R+STEGTGL LG+SN LL WILLGV  LIW+L+ +Y+S L   ++  GLSL
Sbjct: 67  AMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESGGLSL 124


>sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein,
           chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1
          Length = 137

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 38/58 (65%), Positives = 46/58 (79%)
 Frame = +1

Query: 271 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           A+ALVD+R+STEGTGL  G+SN LL WIL GV  LIWAL+ VY+S L   D++SGLSL
Sbjct: 81  AMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEE-DEESGLSL 137


>sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein,
           chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2
          Length = 133

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +1

Query: 271 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           A+ALVD+R+STEGTGL  G+SN LL WIL GV  LIW  F VY+S L   D++SGLSL
Sbjct: 77  AMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEE-DEESGLSL 133


>sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein,
           chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1
           SV=1
          Length = 115

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
 Frame = +1

Query: 271 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDD-DSGLSL 444
           A ALVD+R++ +GTG   GV++P+L W+LLGV   +WA++ +    L   +D D GL L
Sbjct: 57  AFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL 115


>sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein
           (Fragment) OS=Triticum aestivum GN=psbW PE=1 SV=1
          Length = 20

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +1

Query: 280 LVDDRLSTEGTGLGLGVSN 336
           LVD+R+STEGTGL LG+SN
Sbjct: 1   LVDERMSTEGTGLSLGLSN 19


>sp|Q8ZPK5|CLCB_SALTY Voltage-gated ClC-type chloride channel clcB
           OS=Salmonella typhimurium GN=clcB PE=3 SV=2
          Length = 417

 Score = 26.6 bits (57), Expect(2) = 2.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 360 WCCNPNLGPFLSIFVPPPPWR**LGSLVVGLPPCMCPSI 476
           W    +   FL + + PP W+  LG L+VGL   + P++
Sbjct: 240 WLMTASHNSFLRLKLSPP-WQLALGGLIVGLLSLLTPTV 277



 Score = 23.1 bits (48), Expect(2) = 2.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 310 TGLGLGVSNPLLIWIL 357
           TGL  G+  PLL+W++
Sbjct: 227 TGLVAGLCGPLLMWLM 242


>sp|Q8Z6Y0|CLCB_SALTI Voltage-gated ClC-type chloride channel clcB
           OS=Salmonella typhi GN=clcB PE=3 SV=2
          Length = 417

 Score = 26.6 bits (57), Expect(2) = 3.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 360 WCCNPNLGPFLSIFVPPPPWR**LGSLVVGLPPCMCPSI 476
           W    +   FL + + PP W+  LG L+VGL   + P++
Sbjct: 240 WLMTASHNSFLRLKLSPP-WQLALGGLIVGLLSLLTPTV 277



 Score = 22.3 bits (46), Expect(2) = 3.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 310 TGLGLGVSNPLLIWIL 357
           TGL  G+  PLL+W++
Sbjct: 227 TGLVAGLWGPLLMWLM 242


>sp|Q3SNN8|NHAA_NITWN Na(+)/H(+) antiporter nhaA OS=Nitrobacter
           winogradskyi (strain Nb-255 / ATCC 25391) GN=nhaA PE=3
           SV=1
          Length = 455

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = +1

Query: 262 GGSAIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLS 441
           GG  +   +  L+  G GL L V  PL      GV    W +  +   RLPPG    G+ 
Sbjct: 338 GGVNLFAGEAHLAMLGVGLALVVGKPL------GVVGATWFMVRMGWCRLPPGVSWGGIL 391

Query: 442 L*GCL 456
           L G L
Sbjct: 392 LIGLL 396


>sp|Q5UNV3|YL690_MIMIV Uncharacterized protein L690 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_L690 PE=1 SV=1
          Length = 374

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +3

Query: 3   SQPGLLLLTASHGSC----DVHIPIYDFFVFNRAVTG 101
           S+ GL+L  + HG+C     V  P++ F V N+ +TG
Sbjct: 136 SRGGLMLTCSEHGTCHSFNPVVDPLHSFIVLNQQITG 172


>sp|A8AGW0|CLCB_CITK8 Voltage-gated ClC-type chloride channel clcB
           OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
           / SGSC4696) GN=clcB PE=3 SV=1
          Length = 417

 Score = 24.6 bits (52), Expect(2) = 9.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 411 PPWR**LGSLVVGLPPCMCPSI 476
           PPW+  LG  +VGL   + P++
Sbjct: 256 PPWQLALGGFIVGLLSLLTPAV 277



 Score = 22.7 bits (47), Expect(2) = 9.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 310 TGLGLGVSNPLLIWIL 357
           TGL  GV  PL +W++
Sbjct: 227 TGLVAGVCGPLFMWLM 242
tr_hit_id A9SEQ6
Definition tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 111
Score (bit) 100.0
E-value 3.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944350|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_M15, 5'
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment) OS=Physcomit...   100   3e-20
tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella paten...    92   1e-17
tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit...    88   2e-16
tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment) OS=Physcomit...    88   2e-16
tr|A3B5P7|A3B5P7_ORYSJ Putative uncharacterized protein OS=Oryza...    77   5e-13
tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein ...    77   6e-13
tr|B6TM37|B6TM37_MAIZE Photosystem II reaction center W protein ...    77   6e-13
tr|B6T2W4|B6T2W4_MAIZE Photosystem II reaction center W protein ...    77   6e-13
tr|B6SMK2|B6SMK2_MAIZE Photosystem II reaction center W protein ...    77   6e-13
tr|B4FUI4|B4FUI4_MAIZE Photosystem II reaction center W protein ...    77   6e-13
tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Popul...    77   6e-13
tr|A9NL01|A9NL01_PICSI Putative uncharacterized protein OS=Picea...    77   6e-13
tr|A9NLC2|A9NLC2_PICSI Putative uncharacterized protein OS=Picea...    76   1e-12
tr|A9PEP9|A9PEP9_POPTR Putative uncharacterized protein OS=Popul...    75   2e-12
tr|B7E500|B7E500_ORYSJ cDNA clone:001-011-D03, full insert seque...    74   3e-12
tr|A2WVK4|A2WVK4_ORYSI Putative uncharacterized protein OS=Oryza...    74   3e-12
tr|A7QVP6|A7QVP6_VITVI Chromosome chr14 scaffold_190, whole geno...    74   4e-12
tr|A5C3A9|A5C3A9_VITVI Putative uncharacterized protein OS=Vitis...    74   4e-12
tr|Q9AXN8|Q9AXN8_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit...    73   7e-12
tr|B7FHC2|B7FHC2_MEDTR Putative uncharacterized protein OS=Medic...    73   7e-12
tr|A1YMY4|A1YMY4_BRACM Component of 6.1 kDa polypeptide of photo...    71   4e-11
tr|Q41908|Q41908_ARATH Photosystem II 7kD protein OS=Arabidopsis...    70   5e-11
tr|A7PUM2|A7PUM2_VITVI Chromosome chr7 scaffold_31, whole genome...    69   1e-10
tr|Q8W536|Q8W536_9FABA Photosystem II reaction center (Fragment)...    66   9e-10
tr|Q9AXP0|Q9AXP0_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit...    65   2e-09
tr|A8JFQ7|A8JFQ7_CHLRE Photosystem II reaction center W protein ...    52   2e-05
tr|Q944K9|Q944K9_ARATH At2g30570/T6B20.8 OS=Arabidopsis thaliana...    50   8e-05
tr|B5A4J5|B5A4J5_GYMST Photosystem II reaction center W protein ...    50   8e-05
tr|A2SY30|A2SY30_MESVI Photosystem II reaction center W protein ...    47   4e-04
tr|Q7XYI4|Q7XYI4_BIGNA Photosystem II protein PsbW OS=Bigelowiel...    46   0.001

>tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_128580 PE=4 SV=1
          Length = 142

 Score =  100 bits (250), Expect = 3e-20
 Identities = 56/111 (50%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
 Frame = +1

Query: 115 RAPARAIAGLPAFPTFHISNSSQRQEK-KGSSAGEQXXXXXXXXXXXXXQGGSAIALVDD 291
           RA AR +AG+P      I  S +++E  KG   G                     ALVD+
Sbjct: 32  RAAARPVAGVPVLAMPRIVCSLEKKESNKGDVNGLPQLAAAVTSAATMAYAHPVFALVDE 91

Query: 292 RLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           RLSTEGTGLGLGVSNP L WIL+GV  L+WA++  YSS LP GDDDSGLSL
Sbjct: 92  RLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSGLSL 142


>tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_232256 PE=4 SV=1
          Length = 64

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 43/56 (76%), Positives = 48/56 (85%)
 Frame = +1

Query: 277 ALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           ALVD+RLSTEGTGLGLGVSNP L WIL+GV  L+WA++  YSS LP GDDDSGLSL
Sbjct: 9   ALVDERLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSGLSL 64


>tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment)
           OS=Physcomitrella patens PE=2 SV=1
          Length = 69

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 42/56 (75%), Positives = 46/56 (82%)
 Frame = +1

Query: 277 ALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           ALVD+RLSTEGTGLGLG+SN  L WIL+GV  LIWAL+  YSS LP GDDDSGL L
Sbjct: 14  ALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSGLDL 69


>tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_9752 PE=4 SV=1
          Length = 67

 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 42/56 (75%), Positives = 46/56 (82%)
 Frame = +1

Query: 277 ALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           ALVD+RLSTEGTGLGLG+SN  L WIL+GV  LIWAL+  YSS LP GDDDSGL L
Sbjct: 12  ALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSGLDL 67


>tr|A3B5P7|A3B5P7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018369 PE=4 SV=1
          Length = 128

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 38/59 (64%), Positives = 47/59 (79%)
 Frame = +1

Query: 268 SAIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           +A+ALVD+R+STEGTGL LG+SN LL WILLGV  LIW+L+ VY+S L   D+  GLSL
Sbjct: 70  AAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSTLDDDDESGGLSL 128


>tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein
           OS=Zea mays PE=2 SV=1
          Length = 127

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 40/57 (70%), Positives = 47/57 (82%)
 Frame = +1

Query: 274 IALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           +ALVD+R+STEGTGL LG+SN LL WILLGV  LIW+L+ VY+S L   DDDSGLSL
Sbjct: 72  LALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSTLDE-DDDSGLSL 127


>tr|B6TM37|B6TM37_MAIZE Photosystem II reaction center W protein
           OS=Zea mays PE=2 SV=1
          Length = 127

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 37/60 (61%), Positives = 47/60 (78%)
 Frame = +1

Query: 265 GSAIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           G A+ALVD+R+STEGTGL LG+SN LL WILLGV  LIW+L+ +Y+S L   ++  GLSL
Sbjct: 68  GPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLDEDEESGGLSL 127


>tr|B6T2W4|B6T2W4_MAIZE Photosystem II reaction center W protein
           OS=Zea mays PE=2 SV=1
          Length = 131

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 37/60 (61%), Positives = 47/60 (78%)
 Frame = +1

Query: 265 GSAIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           G A+ALVD+R+STEGTGL LG+SN LL WILLGV  LIW+L+ +Y+S L   ++  GLSL
Sbjct: 72  GPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLDEDEESGGLSL 131


>tr|B6SMK2|B6SMK2_MAIZE Photosystem II reaction center W protein
           OS=Zea mays PE=2 SV=1
          Length = 130

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 37/60 (61%), Positives = 47/60 (78%)
 Frame = +1

Query: 265 GSAIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           G A+ALVD+R+STEGTGL LG+SN LL WILLGV  LIW+L+ +Y+S L   ++  GLSL
Sbjct: 71  GPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLDEDEESGGLSL 130


>tr|B4FUI4|B4FUI4_MAIZE Photosystem II reaction center W protein
           OS=Zea mays PE=2 SV=1
          Length = 127

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 37/60 (61%), Positives = 47/60 (78%)
 Frame = +1

Query: 265 GSAIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFLVYSSRLPPGDDDSGLSL 444
           G A+ALVD+R+STEGTGL LG+SN LL WILLGV  LIW+L+ +Y+S L   ++  GLSL
Sbjct: 68  GPALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLDEDEESGGLSL 127