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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944351
Clone id YMU02A01NGRL0005_M16
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_M16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAAACTTTATCTTCGCAGAAAA
TATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCGATCTCGTCACTCAT
TCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAGGAAAT
ACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGT
CTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGG
AATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCT
CGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTTCCTGTAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A1VDD3
Definition sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Align length 38
Score (bit) 33.1
E-value 0.63
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944351|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_M16, 5'
         (469 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Des...    33   0.63 
sp|Q72BI1|DAPAT_DESVH LL-diaminopimelate aminotransferase OS=Des...    33   0.63 
sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ...    32   1.8  
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ...    32   1.8  
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN...    32   1.8  
sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    31   2.4  
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic...    31   2.4  
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    30   5.3  
sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein ...    30   6.8  
sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus c...    30   6.9  

>sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase
           OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
           GN=dapL PE=3 SV=1
          Length = 388

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +1

Query: 166 DLVTHSFQELGKIVTKQNCFGTPGNTWFNFYFRGDK*R 279
           D VT   QE G +VT  N FGTPG  +F      D  R
Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNAR 377


>sp|Q72BI1|DAPAT_DESVH LL-diaminopimelate aminotransferase
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=dapL PE=3 SV=1
          Length = 388

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +1

Query: 166 DLVTHSFQELGKIVTKQNCFGTPGNTWFNFYFRGDK*R 279
           D VT   QE G +VT  N FGTPG  +F      D  R
Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNAR 377


>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
           GN=Mmp2 PE=2 SV=1
          Length = 662

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
           GN=MMP2 PE=1 SV=2
          Length = 660

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 616


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
           GN=MMP2 PE=2 SV=1
          Length = 661

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 617


>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
 Frame = +2

Query: 248 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 394
           L+ T+ +++KE+N+W+++ D   +     RI        ++  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
           GN=Mmp2 PE=2 SV=2
          Length = 662

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
           W  NKKT+IF  DK + +  +  + DP   K+ A     +P N
Sbjct: 576 WSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +2

Query: 218 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 382
           IVL+ +  + LI+   +I  EKNLW+ + +    +TK Q+I    K  IN  G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein 3
           OS=Xenopus laevis GN=nt5dc3 PE=2 SV=1
          Length = 499

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 125 TYFLRR*SFFLSVNLAEIRS-LNYQNHCETSHTFTTKLYPLR 3
           TYFLRR S F  + +  + S LNY  H    HTF  K  PL+
Sbjct: 435 TYFLRRLSRFADIYMESLSSLLNYDLH----HTFYPKRTPLQ 472


>sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus
           cuniculus GN=MMP2 PE=2 SV=1
          Length = 662

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLP 23
           W  NKKT+IF  DK + +  +  + DP   ++ A     +P
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPRLIADAWNAIP 616
tr_hit_id A6LW33
Definition tr|A6LW33|A6LW33_CLOB8 Putative CoA-substrate-specific enzyme activase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
Align length 48
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944351|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_M16, 5'
         (469 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6LW33|A6LW33_CLOB8 Putative CoA-substrate-specific enzyme ac...    34   4.2  
tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty...    33   9.3  

>tr|A6LW33|A6LW33_CLOB8 Putative CoA-substrate-specific enzyme
           activase OS=Clostridium beijerinckii (strain ATCC 51743
           / NCIMB 8052) GN=Cbei_2405 PE=4 SV=1
          Length = 1437

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 127 FSYYFSKIRGRLIDLVTHSFQELGKIVTKQNCFGTPG---NTWFNFYF 261
           +  +FS IR  +IDL+   + ELG +  K N  G+ G   + W N  F
Sbjct: 31  YKRHFSDIRSTIIDLIKECYDELGNVNCKINITGSGGLSVSKWLNLGF 78


>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
          Length = 955

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 239 ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 403
           I+G ++ SGE+N E   ++   DS   +T    IN+GK   IN S  +  I   F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796