DK944352 [AcEST]

DK944352
Clone id	YMU02A01NGRL0005_M17
Library	YMU02
Length	497
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_M17. 5' end sequence.
Accession	DK944352
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL1Contig3
Sequence	TATCGTAGCGGGTATAGTTTAGTGGTAAAAGCGTGACTCGTCTCGCAGTGATTTTGATAG TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCGTT CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAAATCTATGGGTAGACGT CTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGG AATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCT CGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTTCAAAAAAAAAAAA AAAAAAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	A1VDD3
Definition	sp\|A1VDD3\|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Align length	38
Score (bit)	30.0
E-value	5.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK944352\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_M17, 5' (468 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|A1VDD3\|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Des... 30 5.2 sp\|Q72BI1\|DAPAT_DESVH LL-diaminopimelate aminotransferase OS=Des... 30 5.2 >sp\|A1VDD3\|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=dapL PE=3 SV=1 Length = 388 Score = 30.0 bits (66), Expect = 5.2 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +3 Query: 165 NLVTRSFQELGKIVTKQNCFGTPRNTWFNFYFRGDKR 278 + VTR QE G +VT N FGTP +F D R Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNAR 377 >sp\|Q72BI1\|DAPAT_DESVH LL-diaminopimelate aminotransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dapL PE=3 SV=1 Length = 388 Score = 30.0 bits (66), Expect = 5.2 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +3 Query: 165 NLVTRSFQELGKIVTKQNCFGTPRNTWFNFYFRGDKR 278 + VTR QE G +VT N FGTP +F D R Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNAR 377
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A6D2J9
Definition	tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length	50
Score (bit)	34.3
E-value	3.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK944352\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_M17, 5' (468 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 34 3.2 >tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1 GN=VSAK1_01567 PE=4 SV=1 Length = 319 Score = 34.3 bits (77), Expect = 3.2 Identities = 16/50 (32%), Positives = 30/50 (60%) Frame = -2 Query: 188 LKTSDEIDSTSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39 LK ++E+D ST + ++++F A +F+L VNL + R++ Q C + Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283