DK944353 |
Clone id |
YMU02A01NGRL0005_M18 |
Library |
YMU02 |
Length |
424 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_M18. 5' end sequence. |
Accession |
DK944353 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL4Contig1 |
Sequence |
GTTTTGTCAAGATGATTCCTACCAAGCCCATGACTGTTGAGACCTTTTCAGAGTATCCTC CACTTGGACGGTTTGCTGTTCGAGATATGAGGCAGACTGTTGCCGTGGGAGTCATCAAGG CAGTGGAAAAGAAGGATGCTTCTGGTGCCAAGGTTACTGAGGCTGCCCTGAAGAAGAAAT GAACCTGACTTTGTGATGGTAGTGGGTCTGGTAGTTTTTTGTGTGTTTTGATGCTTCGGA TGATATTATCTAGAGTGTTGCAGACATGGGTTTTGGATAGACGGTGGCGCGGTTTCGCTG TGCTTCCTCCTCTTACCGGCCTTTTCTATTTACATGAACTTTGCCTAAGTAACTGATAAT GTAGACAACTATGTTGTTTTGTTTTCTCCTGAATATTATGTTGAGGCTTTTCCTTTGCTC TTTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P25698 |
Definition |
sp|P25698|EF1A_SOYBN Elongation factor 1-alpha OS=Glycine max |
Align length |
59 |
Score (bit) |
105.0 |
E-value |
5.0e-23 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B1PID4 |
Definition |
tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) OS=Cupressus sempervirens |
Align length |
112 |
Score (bit) |
125.0 |
E-value |
1.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944353|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_M18, 5' (410 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) ... 125 1e-27 tr|Q9LN13|Q9LN13_ARATH Elongation factor 1-alpha OS=Arabidopsis ... 115 1e-24 tr|A9SJB4|A9SJB4_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 108 1e-22 tr|Q9XEW9|Q9XEW9_LILLO Elongation factor 1-alpha OS=Lilium longi... 108 1e-22 tr|A9SA16|A9SA16_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 107 2e-22 tr|A9SA12|A9SA12_PHYPA Predicted protein OS=Physcomitrella paten... 107 2e-22 tr|A9SA04|A9SA04_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 107 2e-22 tr|A9RGD1|A9RGD1_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 107 2e-22 tr|A9RGA5|A9RGA5_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 107 2e-22 tr|Q9AVT7|Q9AVT7_PICAB Elongation factor 1-alpha (Fragment) OS=P... 107 3e-22 tr|Q5ME93|Q5ME93_PSEMZ Translation elongation factor-1 alpha (Fr... 107 3e-22 tr|Q5ME78|Q5ME78_PSEMZ Translation elongation factor-1 alpha (Fr... 107 3e-22 tr|Q14K72|Q14K72_PLAAC Translation elongation factor 1 alpha (Fr... 107 3e-22 tr|Q0VJA7|Q0VJA7_PLAAC Elongation factor 1 alpha (Fragment) OS=P... 107 3e-22 tr|B6TWN7|B6TWN7_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 107 3e-22 tr|B4FRE1|B4FRE1_MAIZE Putative uncharacterized protein OS=Zea m... 107 3e-22 tr|A9P004|A9P004_PICSI Putative uncharacterized protein OS=Picea... 107 3e-22 tr|A9NWR1|A9NWR1_PICSI Elongation factor 1-alpha OS=Picea sitche... 107 3e-22 tr|A9NUF4|A9NUF4_PICSI Elongation factor 1-alpha OS=Picea sitche... 107 3e-22 tr|A7PSZ7|A7PSZ7_VITVI Elongation factor 1-alpha OS=Vitis vinife... 107 3e-22 tr|A5C4C2|A5C4C2_VITVI Elongation factor 1-alpha OS=Vitis vinife... 107 3e-22 tr|A5B1I3|A5B1I3_VITVI Putative uncharacterized protein OS=Vitis... 107 3e-22 tr|A5AFS1|A5AFS1_VITVI Elongation factor 1-alpha OS=Vitis vinife... 107 3e-22 tr|Q9M7E2|Q9M7E2_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 107 4e-22 tr|Q58I24|Q58I24_ACTDE Elongation factor 1-alpha OS=Actinidia de... 107 4e-22 tr|Q9ZRP9|Q9ZRP9_MALDO Elongation factor 1-alpha OS=Malus domest... 106 7e-22 tr|Q8W0W2|Q8W0W2_ELAOL Elongation factor 1-alpha OS=Elaeis oleif... 106 7e-22 tr|Q5J1K3|Q5J1K3_ELAGV Elongation factor 1-alpha OS=Elaeis guine... 106 7e-22 tr|A5GZB0|A5GZB0_LITCN Elongation factor 1-alpha OS=Litchi chine... 106 7e-22 tr|Q84RU1|Q84RU1_AVIMR Elongation factor 1-alpha OS=Avicennia ma... 105 9e-22
>tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) OS=Cupressus sempervirens PE=2 SV=1 Length = 138
Score = 125 bits (313), Expect = 1e-27 Identities = 71/112 (63%), Positives = 84/112 (75%), Gaps = 13/112 (11%) Frame = +3
Query: 3 FVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTEAALKKK* 182 FVKMIPTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+VEKK+ +GAKVT+AA KKK Sbjct: 20 FVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGAKVTKAAAKKKR 79
Query: 183 T*LCDGS------GSGSFLCV-------LMLRMILSRVLQTWVLDRRWRGFA 299 + L D + G S+LC+ L++R ++R +QTWVLDRRW A Sbjct: 80 S-LVDCAVEEARHGHLSWLCLSRPIAQDLLVRCSVARRMQTWVLDRRWHHIA 130
>tr|Q9LN13|Q9LN13_ARATH Elongation factor 1-alpha OS=Arabidopsis thaliana PE=3 SV=1 Length = 967
Score = 115 bits (287), Expect = 1e-24 Identities = 66/113 (58%), Positives = 76/113 (67%), Gaps = 11/113 (9%) Frame = +3
Query: 6 VKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTEAALKKK*T 185 VKM PTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+V+KKD +GAKVT+AA+KK Sbjct: 390 VKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVKKG-- 447
Query: 186 *LCDGSGSGSF----------LCVLMLRMILSRVLQTWVLDRRWRGFA-VLPP 311 + S SF LC + R + WVLDRRWR + +LPP Sbjct: 448 ---ESKDSVSFITIVWYLVACLCSCFVFSPSERCSRNWVLDRRWRIYTHILPP 497
Score = 100 bits (250), Expect = 3e-20 Identities = 49/57 (85%), Positives = 54/57 (94%) Frame = +3
Query: 6 VKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTEAALKK 176 VKM PTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+V+KKD +GAKVT+AA+KK Sbjct: 908 VKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVKK 964
>tr|A9SJB4|A9SJB4_PHYPA Elongation factor 1-alpha OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_212963 PE=3 SV=1 Length = 447
Score = 108 bits (271), Expect = 1e-22 Identities = 54/59 (91%), Positives = 57/59 (96%) Frame = +3
Query: 3 FVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTEAALKKK 179 FVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKK+ +GAKVT+AA KKK Sbjct: 389 FVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPTGAKVTKAAAKKK 447
>tr|Q9XEW9|Q9XEW9_LILLO Elongation factor 1-alpha OS=Lilium longiflorum GN=EF-1-alpha1 PE=2 SV=1 Length = 447
Score = 108 bits (270), Expect = 1e-22 Identities = 53/59 (89%), Positives = 57/59 (96%) Frame = +3
Query: 3 FVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTEAALKKK 179 FVKMIPTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+VEKKD +GAKVT+AA+KKK Sbjct: 389 FVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAIKKK 447
>tr|A9SA16|A9SA16_PHYPA Elongation factor 1-alpha OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_76520 PE=3 SV=1 Length = 447
Score = 107 bits (268), Expect = 2e-22 Identities = 53/59 (89%), Positives = 57/59 (96%) Frame = +3
Query: 3 FVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTEAALKKK 179 FVKMIPTKPMTVETF+EYPPLGRFAVRDMRQTVAVGVIKAVEKK+ +GAKVT+AA KKK Sbjct: 389 FVKMIPTKPMTVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPTGAKVTKAAAKKK 447
>tr|A9SA12|A9SA12_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_182704 PE=4 SV=1 Length = 352
Score = 107 bits (268), Expect = 2e-22 Identities = 53/59 (89%), Positives = 57/59 (96%) Frame = +3
Query: 3 FVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTEAALKKK 179 FVKMIPTKPMTVETF+EYPPLGRFAVRDMRQTVAVGVIKAVEKK+ +GAKVT+AA KKK Sbjct: 294 FVKMIPTKPMTVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPTGAKVTKAAAKKK 352
>tr|A9SA04|A9SA04_PHYPA Elongation factor 1-alpha OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163704 PE=3 SV=1 Length = 447
Score = 107 bits (268), Expect = 2e-22 Identities = 53/59 (89%), Positives = 57/59 (96%) Frame = +3
Query: 3 FVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTEAALKKK 179 FVKMIPTKPMTVETF+EYPPLGRFAVRDMRQTVAVGVIKAVEKK+ +GAKVT+AA KKK Sbjct: 389 FVKMIPTKPMTVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPTGAKVTKAAAKKK 447
>tr|A9RGD1|A9RGD1_PHYPA Elongation factor 1-alpha OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_104509 PE=3 SV=1 Length = 447
Score = 107 bits (268), Expect = 2e-22 Identities = 53/59 (89%), Positives = 57/59 (96%) Frame = +3
Query: 3 FVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTEAALKKK 179 FVKMIPTKPMTVETF+EYPPLGRFAVRDMRQTVAVGVIKAVEKK+ +GAKVT+AA KKK Sbjct: 389 FVKMIPTKPMTVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPTGAKVTKAAAKKK 447
>tr|A9RGA5|A9RGA5_PHYPA Elongation factor 1-alpha OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_158894 PE=3 SV=1 Length = 447
Score = 107 bits (268), Expect = 2e-22 Identities = 53/59 (89%), Positives = 57/59 (96%) Frame = +3
Query: 3 FVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTEAALKKK 179 FVKMIPTKPMTVETF+EYPPLGRFAVRDMRQTVAVGVIKAVEKK+ +GAKVT+AA KKK Sbjct: 389 FVKMIPTKPMTVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPTGAKVTKAAAKKK 447
>tr|Q9AVT7|Q9AVT7_PICAB Elongation factor 1-alpha (Fragment) OS=Picea abies PE=2 SV=1 Length = 444
Score = 107 bits (267), Expect = 3e-22 Identities = 53/59 (89%), Positives = 56/59 (94%) Frame = +3
Query: 3 FVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTEAALKKK 179 FVKMIPTKPM VETF+EYPPLGRFAVRDMRQTVAVGVIKAVEKKD +GAKVT+AA KKK Sbjct: 386 FVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAAKKK 444
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