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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944366
Clone id YMU02A01NGRL0005_N09
Library
Length 475
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_N09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAAGTGGAGAGTAGTACTAAGGCAGGCAGGCACATGGGGATGTCATCAGGTCGGCTCAG
GACTTATGTGATGTCCTTCGATCAAAAGACATTGCAGCGCTATGCAAATTTGAGGTCGAA
AGAAAGTGCAAGTGTGATTGAAAGACACACAGAAGCCCTTTTTGGTAAACCAGAGATAAA
AATCACGCCAGAAGGCACGGTTGCAATAGCTAAGGATGAGGTGATAGTGTTGAGCTTTTC
TGGGCTCAGGAGATTAGTACTAGAAGCAGTTGCTTTTGGAAGCTATCTTTGGGATGTGGA
AACCTGTGTGGATACCCATTATAATTTTGTGGCTCGCTAAGGTCACTGAGGCTAATAAAC
ATTGTTAATATGNNANANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAACCCAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P54381
Definition sp|P54381|SYGB_BACSU Glycyl-tRNA synthetase beta subunit OS=Bacillus subtilis
Align length 45
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944366|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_N09, 5'
         (372 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54381|SYGB_BACSU Glycyl-tRNA synthetase beta subunit OS=Baci...    32   1.3  
sp|Q8Y013|RPIA_RALSO Ribose-5-phosphate isomerase A OS=Ralstonia...    30   4.9  
sp|Q5KQT7|CP1A1_FELCA Cytochrome P450 1A1 OS=Felis silvestris ca...    30   4.9  
sp|Q6B516|SPHKB_DICDI Sphingosine kinase B OS=Dictyostelium disc...    29   8.3  

>sp|P54381|SYGB_BACSU Glycyl-tRNA synthetase beta subunit
           OS=Bacillus subtilis GN=glyS PE=3 SV=1
          Length = 679

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = -1

Query: 240 EKLNTITSSLAIATVPSGVIFISGLPKRASVCLSITLALSFDLKF 106
           +KL+TI S  +I  +P+G     GLP++AS  ++I L  ++ + F
Sbjct: 456 DKLDTIASFFSIGVIPTGSQDPYGLPRQASGIVAILLDRNWGISF 500


>sp|Q8Y013|RPIA_RALSO Ribose-5-phosphate isomerase A OS=Ralstonia
           solanacearum GN=rpiA PE=3 SV=1
          Length = 228

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 131 SVIERHTEALFGKPEIKITPEGTVAIAKDEVIVLSFSGLR 250
           + + R   AL G+P +++T EG +    +  ++L  SGLR
Sbjct: 145 AAVARQLAALGGQPRLRMTKEGQIYQTDNGNVILDVSGLR 184


>sp|Q5KQT7|CP1A1_FELCA Cytochrome P450 1A1 OS=Felis silvestris catus
           GN=CYP1A1 PE=2 SV=1
          Length = 517

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +2

Query: 146 HTEALFG-----KPEIKITPEGTVAIAKDEVIVLSFSGLRRLVLEAVA 274
           H + L+G     +PE  +TP+GT+  A  E ++L   G R+ + E +A
Sbjct: 421 HDQKLWGDPSEFRPERFLTPDGTINKALSEKVILFGLGKRKCIGETIA 468


>sp|Q6B516|SPHKB_DICDI Sphingosine kinase B OS=Dictyostelium
           discoideum GN=sgkB PE=2 SV=1
          Length = 760

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = -1

Query: 312 STQVSTSQR*LPKATASSTNLLSPE-------KLNTITSSLAIATVPS 190
           ST  STS       TA STN LS           N+I+ SL I T+PS
Sbjct: 573 STSTSTSSLTATTTTAKSTNSLSSSPRSDINMSSNSISKSLDIGTIPS 620
tr_hit_id A7QTZ7
Definition tr|A7QTZ7|A7QTZ7_VITVI Chromosome undetermined scaffold_174, whole genome shotgun sequence OS=Vitis vinifera
Align length 105
Score (bit) 142.0
E-value 1.0e-32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944366|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_N09, 5'
         (372 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QTZ7|A7QTZ7_VITVI Chromosome undetermined scaffold_174, who...   142   1e-32
tr|A9PIE4|A9PIE4_POPTR Putative uncharacterized protein OS=Popul...   140   3e-32
tr|Q10DW0|Q10DW0_ORYSJ Os03g0717900 protein OS=Oryza sativa subs...   139   5e-32
tr|Q10DV9|Q10DV9_ORYSJ cDNA clone:001-023-C09, full insert seque...   139   5e-32
tr|A3AM41|A3AM41_ORYSJ Putative uncharacterized protein OS=Oryza...   139   5e-32
tr|A2XLF0|A2XLF0_ORYSI Putative uncharacterized protein OS=Oryza...   139   5e-32
tr|Q9AT51|Q9AT51_BRANA Putative uncharacterized protein (Fragmen...   138   1e-31
tr|Q9LP80|Q9LP80_ARATH T1N15.6 (Putative uncharacterized protein...   138   2e-31
tr|B6TEU7|B6TEU7_MAIZE Putative uncharacterized protein OS=Zea m...   137   3e-31
tr|B4G0A9|B4G0A9_MAIZE Putative uncharacterized protein OS=Zea m...   137   3e-31
tr|Q9LVJ0|Q9LVJ0_ARATH Gb|AAF02142.1 (Putative uncharacterized p...   136   5e-31
tr|Q8W4L9|Q8W4L9_ARATH Putative uncharacterized protein At3g1780...   136   5e-31
tr|Q0WNF6|Q0WNF6_ARATH Putative uncharacterized protein At3g1780...   136   5e-31
tr|A9PF86|A9PF86_POPTR Putative uncharacterized protein OS=Popul...   135   1e-30
tr|Q14K79|Q14K79_PLAAC Putative uncharacterized protein (Fragmen...   130   2e-29
tr|A5BZG6|A5BZG6_VITVI Putative uncharacterized protein OS=Vitis...   129   9e-29
tr|Q56ZA5|Q56ZA5_ARATH Putative uncharacterized protein At3g1780...   126   5e-28
tr|B7FJF5|B7FJF5_MEDTR Putative uncharacterized protein OS=Medic...   125   1e-27
tr|B8LPW2|B8LPW2_PICSI Putative uncharacterized protein OS=Picea...   123   5e-27
tr|A7PC12|A7PC12_VITVI Chromosome chr2 scaffold_11, whole genome...   117   3e-25
tr|A5AE17|A5AE17_VITVI Putative uncharacterized protein OS=Vitis...   117   3e-25
tr|Q9FVR1|Q9FVR1_ARATH Putative uncharacterized protein F3C3.6 (...   107   2e-22
tr|B6UFZ7|B6UFZ7_MAIZE Putative uncharacterized protein OS=Zea m...   104   2e-21
tr|B8LKC1|B8LKC1_PICSI Putative uncharacterized protein OS=Picea...   103   6e-21
tr|A6N1R0|A6N1R0_ORYSI Putative uncharacterized protein (Fragmen...   102   9e-21
tr|Q7X6P4|Q7X6P4_ORYSA OSJNBa0006A01.21 protein (OSJNba0093F12.3...   101   2e-20
tr|Q0JAJ2|Q0JAJ2_ORYSJ Os04g0595100 protein OS=Oryza sativa subs...   101   2e-20
tr|B8ATK2|B8ATK2_ORYSI Putative uncharacterized protein OS=Oryza...   101   2e-20
tr|A5BNG8|A5BNG8_VITVI Putative uncharacterized protein OS=Vitis...    97   4e-19
tr|A7PSL3|A7PSL3_VITVI Chromosome chr6 scaffold_28, whole genome...    96   7e-19

>tr|A7QTZ7|A7QTZ7_VITVI Chromosome undetermined scaffold_174, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00006608001 PE=4 SV=1
          Length = 362

 Score =  142 bits (357), Expect = 1e-32
 Identities = 68/105 (64%), Positives = 85/105 (80%)
 Frame = +2

Query: 17  TKAGRHMGMSSGRLRTYVMSFDQKTLQRYANLRSKESASVIERHTEALFGKPEIKITPEG 196
           T  G   G+   RLR YVMSFD +TLQRYA +RSKE+ S+IE+HTEALFG+PEI ITP+G
Sbjct: 256 TPGGFGHGIKPSRLRNYVMSFDAETLQRYATIRSKEAVSIIEKHTEALFGRPEIIITPQG 315

Query: 197 TVAIAKDEVIVLSFSGLRRLVLEAVAFGSYLWDVETCVDTHYNFV 331
           T+  +KDE+I +SF GL+RLVLEAV FGS+LWDVE+ VD+ Y+FV
Sbjct: 316 TIDSSKDELIKISFGGLKRLVLEAVTFGSFLWDVESFVDSRYHFV 360


>tr|A9PIE4|A9PIE4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 417

 Score =  140 bits (353), Expect = 3e-32
 Identities = 64/98 (65%), Positives = 82/98 (83%)
 Frame = +2

Query: 38  GMSSGRLRTYVMSFDQKTLQRYANLRSKESASVIERHTEALFGKPEIKITPEGTVAIAKD 217
           G+ + RLR YVMSFD +TLQRYA +RSKE+ S+IE+HTEALFG+PEI ITP+GT+  +KD
Sbjct: 318 GLKASRLRNYVMSFDAETLQRYATIRSKEAVSIIEKHTEALFGRPEIVITPQGTIDTSKD 377

Query: 218 EVIVLSFSGLRRLVLEAVAFGSYLWDVETCVDTHYNFV 331
           EV+ +S  GL+RL LEAV FGS+LWDVE+ VD+ Y+FV
Sbjct: 378 EVVTISLGGLKRLALEAVTFGSFLWDVESYVDSRYHFV 415


>tr|Q10DW0|Q10DW0_ORYSJ Os03g0717900 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0717900 PE=2 SV=1
          Length = 455

 Score =  139 bits (351), Expect = 5e-32
 Identities = 67/94 (71%), Positives = 81/94 (86%)
 Frame = +2

Query: 53  RLRTYVMSFDQKTLQRYANLRSKESASVIERHTEALFGKPEIKITPEGTVAIAKDEVIVL 232
           RLR+YVMSFD +TLQ YA +RSKE+  +IE+HTEALFGKPEI ITPEGTV  +KDE + +
Sbjct: 361 RLRSYVMSFDSETLQSYATIRSKEAFGIIEKHTEALFGKPEIVITPEGTVDSSKDEHVRI 420

Query: 233 SFSGLRRLVLEAVAFGSYLWDVETCVDTHYNFVA 334
           SF+GLRRL+LEAV FGS+LWDVE+ VDT Y+FVA
Sbjct: 421 SFAGLRRLILEAVTFGSFLWDVESFVDTRYHFVA 454


>tr|Q10DV9|Q10DV9_ORYSJ cDNA clone:001-023-C09, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os03g50870 PE=2
           SV=1
          Length = 328

 Score =  139 bits (351), Expect = 5e-32
 Identities = 67/94 (71%), Positives = 81/94 (86%)
 Frame = +2

Query: 53  RLRTYVMSFDQKTLQRYANLRSKESASVIERHTEALFGKPEIKITPEGTVAIAKDEVIVL 232
           RLR+YVMSFD +TLQ YA +RSKE+  +IE+HTEALFGKPEI ITPEGTV  +KDE + +
Sbjct: 234 RLRSYVMSFDSETLQSYATIRSKEAFGIIEKHTEALFGKPEIVITPEGTVDSSKDEHVRI 293

Query: 233 SFSGLRRLVLEAVAFGSYLWDVETCVDTHYNFVA 334
           SF+GLRRL+LEAV FGS+LWDVE+ VDT Y+FVA
Sbjct: 294 SFAGLRRLILEAVTFGSFLWDVESFVDTRYHFVA 327


>tr|A3AM41|A3AM41_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011863 PE=4 SV=1
          Length = 413

 Score =  139 bits (351), Expect = 5e-32
 Identities = 67/94 (71%), Positives = 81/94 (86%)
 Frame = +2

Query: 53  RLRTYVMSFDQKTLQRYANLRSKESASVIERHTEALFGKPEIKITPEGTVAIAKDEVIVL 232
           RLR+YVMSFD +TLQ YA +RSKE+  +IE+HTEALFGKPEI ITPEGTV  +KDE + +
Sbjct: 319 RLRSYVMSFDSETLQSYATIRSKEAFGIIEKHTEALFGKPEIVITPEGTVDSSKDEHVRI 378

Query: 233 SFSGLRRLVLEAVAFGSYLWDVETCVDTHYNFVA 334
           SF+GLRRL+LEAV FGS+LWDVE+ VDT Y+FVA
Sbjct: 379 SFAGLRRLILEAVTFGSFLWDVESFVDTRYHFVA 412


>tr|A2XLF0|A2XLF0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13299 PE=4 SV=1
          Length = 413

 Score =  139 bits (351), Expect = 5e-32
 Identities = 67/94 (71%), Positives = 81/94 (86%)
 Frame = +2

Query: 53  RLRTYVMSFDQKTLQRYANLRSKESASVIERHTEALFGKPEIKITPEGTVAIAKDEVIVL 232
           RLR+YVMSFD +TLQ YA +RSKE+  +IE+HTEALFGKPEI ITPEGTV  +KDE + +
Sbjct: 319 RLRSYVMSFDSETLQSYATIRSKEAFGIIEKHTEALFGKPEIVITPEGTVDSSKDEHVRI 378

Query: 233 SFSGLRRLVLEAVAFGSYLWDVETCVDTHYNFVA 334
           SF+GLRRL+LEAV FGS+LWDVE+ VDT Y+FVA
Sbjct: 379 SFAGLRRLILEAVTFGSFLWDVESFVDTRYHFVA 412


>tr|Q9AT51|Q9AT51_BRANA Putative uncharacterized protein (Fragment)
           OS=Brassica napus PE=2 SV=1
          Length = 256

 Score =  138 bits (348), Expect = 1e-31
 Identities = 66/93 (70%), Positives = 79/93 (84%)
 Frame = +2

Query: 53  RLRTYVMSFDQKTLQRYANLRSKESASVIERHTEALFGKPEIKITPEGTVAIAKDEVIVL 232
           RLRTYVMSFD +TLQRYA +RS+E+  +IE+HTEALFGKPEI ITPEGTV  +KDE I +
Sbjct: 162 RLRTYVMSFDSETLQRYATIRSREAVGIIEKHTEALFGKPEIVITPEGTVDSSKDEQIKI 221

Query: 233 SFSGLRRLVLEAVAFGSYLWDVETCVDTHYNFV 331
           SF G++RLVLEAV FGS+LWDVE+ VD  Y+FV
Sbjct: 222 SFGGMKRLVLEAVTFGSFLWDVESHVDARYHFV 254


>tr|Q9LP80|Q9LP80_ARATH T1N15.6 (Putative uncharacterized protein
           At1g48450) (At1g48450/T1N15_5) OS=Arabidopsis thaliana
           GN=At1g48450 PE=2 SV=1
          Length = 423

 Score =  138 bits (347), Expect = 2e-31
 Identities = 66/106 (62%), Positives = 83/106 (78%)
 Frame = +2

Query: 14  STKAGRHMGMSSGRLRTYVMSFDQKTLQRYANLRSKESASVIERHTEALFGKPEIKITPE 193
           +   G    M   RL+TYVMSFD +TLQRYA +RS+ES  +IE+HTEALFG+PEI ITP+
Sbjct: 316 NASGGFSSDMKQSRLKTYVMSFDGETLQRYATIRSRESVGIIEKHTEALFGRPEIVITPQ 375

Query: 194 GTVAIAKDEVIVLSFSGLRRLVLEAVAFGSYLWDVETCVDTHYNFV 331
           GT+  +KDE I +SF GL+RLVLEAV FGS+LWDVE+ VD+ Y+FV
Sbjct: 376 GTIDSSKDEHIKISFKGLKRLVLEAVTFGSFLWDVESHVDSRYHFV 421


>tr|B6TEU7|B6TEU7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 424

 Score =  137 bits (344), Expect = 3e-31
 Identities = 66/93 (70%), Positives = 80/93 (86%)
 Frame = +2

Query: 53  RLRTYVMSFDQKTLQRYANLRSKESASVIERHTEALFGKPEIKITPEGTVAIAKDEVIVL 232
           RLR+YVMSFD  TLQRYA +RSKE+  +IE+HTEALFGKPEI ITPEGT+  +KDE I +
Sbjct: 330 RLRSYVMSFDSDTLQRYATVRSKEAFGIIEKHTEALFGKPEIVITPEGTLDSSKDEHIRI 389

Query: 233 SFSGLRRLVLEAVAFGSYLWDVETCVDTHYNFV 331
           SF+GLRRL+LEAV FGS+LWDVE+ VD+ Y+FV
Sbjct: 390 SFAGLRRLILEAVTFGSFLWDVESFVDSRYHFV 422


>tr|B4G0A9|B4G0A9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 423

 Score =  137 bits (344), Expect = 3e-31
 Identities = 66/93 (70%), Positives = 80/93 (86%)
 Frame = +2

Query: 53  RLRTYVMSFDQKTLQRYANLRSKESASVIERHTEALFGKPEIKITPEGTVAIAKDEVIVL 232
           RLR+YVMSFD  TLQRYA +RSKE+  +IE+HTEALFGKPEI ITPEGT+  +KDE I +
Sbjct: 329 RLRSYVMSFDSDTLQRYATVRSKEAFGIIEKHTEALFGKPEIVITPEGTLDSSKDEHIRI 388

Query: 233 SFSGLRRLVLEAVAFGSYLWDVETCVDTHYNFV 331
           SF+GLRRL+LEAV FGS+LWDVE+ VD+ Y+FV
Sbjct: 389 SFAGLRRLILEAVTFGSFLWDVESFVDSRYHFV 421