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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944371
Clone id YMU02A01NGRL0005_N14
Library
Length 671
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_N14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTCAAAGAGCTTCTCTGGTCTCAAGG
CCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCTCGCCATCTCTAATGGCAGCCGTG
TGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGAGACTCTGTCCTACT
TGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGTGGACTTCATGGTCCGAAAAGGCT
GGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGTGTACCGAGAGCACTTCCACGGCA
GCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAAGCTGCCCATGTTTGGCTGCCAAG
ATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGCCTTCA
TCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCCAGA
AGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAATTTAGTTGGCATGAATGCCTGCTTCC
CATTTCCCACTGGCGCCTAACAAGCTGGCTCTTATGAGCTTTTGTGTCCCAGCCACTTTG
CATACATAATGAAACAACTTCCCAGTGGTGGCTTCACTGCTTGAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 157
Score (bit) 187.0
E-value 3.0e-47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944371|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_N14, 5'
         (643 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   187   3e-47
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   185   2e-46
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   183   6e-46
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   181   3e-45
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   181   3e-45
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   181   4e-45
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   181   4e-45
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   180   5e-45
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   180   5e-45
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   180   5e-45
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   180   6e-45
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   179   8e-45
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   179   8e-45
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   179   1e-44
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   178   2e-44
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   178   2e-44
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   177   3e-44
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   177   4e-44
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   177   4e-44
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   177   5e-44
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   177   5e-44
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   176   7e-44
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...   176   7e-44

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  187 bits (476), Expect = 3e-47
 Identities = 89/157 (56%), Positives = 111/157 (70%), Gaps = 5/157 (3%)
 Frame = +3

Query: 30  SLSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 197
           SL+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS 
Sbjct: 21  SLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 198 EQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 374
           E ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V
Sbjct: 81  EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 375 LREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 485
           ++E+ EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 141 MKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  185 bits (470), Expect = 2e-46
 Identities = 92/162 (56%), Positives = 116/162 (71%), Gaps = 6/162 (3%)
 Frame = +3

Query: 18  APAES-LSKSFSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYL 182
           +PA+S +   F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYL
Sbjct: 18  SPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYL 77

Query: 183 PPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQ 359
           PPLSSEQ+AK+VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC 
Sbjct: 78  PPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCN 137

Query: 360 DAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 485
           D++ VL+E+ EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 138 DSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  183 bits (465), Expect = 6e-46
 Identities = 90/161 (55%), Positives = 112/161 (69%), Gaps = 5/161 (3%)
 Frame = +3

Query: 21  PAES-LSKSFSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLP 185
           PA+S +   F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLP
Sbjct: 17  PAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLP 76

Query: 186 PLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDA 365
           PLS E +AK+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA
Sbjct: 77  PLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDA 136

Query: 366 AAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           + V+ E+ E  K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 137 SQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  182 bits (463), Expect = 1e-45
 Identities = 88/164 (53%), Positives = 112/164 (68%), Gaps = 8/164 (4%)
 Frame = +3

Query: 18  APAESLSKSFSGLKATTLFAP--KSPNPLA------ISNGSRVSAMLVWKPYDNKKFETL 173
           A A ++  +F+GLK+T  F    K  N  A       SNG RV  M VW P+ N KFETL
Sbjct: 7   AGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETL 66

Query: 174 SYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFG 353
           SYLP L+ EQ+ K+V++++R  W PC+EFD  GS+ R++    GYYDGRYWVMWKLPMFG
Sbjct: 67  SYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFG 126

Query: 354 CQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 485
           C +A+ V+ E+ ECAK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 127 CTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  182 bits (462), Expect = 1e-45
 Identities = 89/163 (54%), Positives = 112/163 (68%), Gaps = 7/163 (4%)
 Frame = +3

Query: 18  APAES-LSKSFSGLKA------TTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLS 176
           +PA+S +   F+GL +      T  FA  S  P   SNG RV  M VW P   KKFETLS
Sbjct: 16  SPAQSNMVVPFAGLHSSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLS 72

Query: 177 YLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGC 356
           YLPPL+ EQ+ ++VD+++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC
Sbjct: 73  YLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGC 132

Query: 357 QDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 485
            D++ VL+E+ EC+K YP+ F R++GFD  RQVQ   FL  KP
Sbjct: 133 TDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  182 bits (462), Expect = 1e-45
 Identities = 92/170 (54%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
 Frame = +3

Query: 3   VAPSCAPAESLSKSF------SGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKF 164
           V P  A A S +KS       +GLKA              +NGSRVS M VW+PY+N KF
Sbjct: 11  VTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKF 70

Query: 165 ETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLP 344
           ETLSYLPPLS + +AKQ+D++++ GW PCIEFD  G+V RE     GYYDGRYW MWKLP
Sbjct: 71  ETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLP 130

Query: 345 MFGCQDAAAVLREIAECAKEY-PEAFIRVLGFDAKRQVQVSGFLVQKPSV 491
           MFGC D+A+VLREI EC K Y  + +IR LGFD  RQVQ + F+V +P++
Sbjct: 131 MFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQPTL 180


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  182 bits (462), Expect = 1e-45
 Identities = 87/152 (57%), Positives = 107/152 (70%), Gaps = 4/152 (2%)
 Frame = +3

Query: 45  FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 212
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 213 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 392
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 393 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
             K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  181 bits (459), Expect = 3e-45
 Identities = 89/162 (54%), Positives = 117/162 (72%), Gaps = 5/162 (3%)
 Frame = +3

Query: 18  APAES-LSKSFSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPYDNKKFETLSYLP 185
           APA++ +   F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLP
Sbjct: 20  APAQARMVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLP 79

Query: 186 PLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQD 362
           PLSSE +AK+VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D
Sbjct: 80  PLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTD 139

Query: 363 AAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           ++ VL+E+ E  K YP++FIR++GFD  RQVQ   F+  KP+
Sbjct: 140 SSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  181 bits (459), Expect = 3e-45
 Identities = 87/166 (52%), Positives = 109/166 (65%), Gaps = 5/166 (3%)
 Frame = +3

Query: 18  APAESLSKSFSGLKATTLFAPKSPNPLAI----SNGSRVSAMLVWKPYDNKKFETLSYLP 185
           A   S+  SF+GLK+   F       L I    SNG RV  MLVW P + KK+ETLSYLP
Sbjct: 17  AAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLP 76

Query: 186 PLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQD 362
            LS EQ+ K+++++++KGW PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D
Sbjct: 77  DLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTD 136

Query: 363 AAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV*TF 500
           A  VL E+ E  K YP+A+IR++GFD  RQVQ   F+  KP    F
Sbjct: 137 ATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEATKF 182


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  181 bits (458), Expect = 4e-45
 Identities = 88/163 (53%), Positives = 116/163 (71%), Gaps = 5/163 (3%)
 Frame = +3

Query: 18  APAES-LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLP 185
           AP ++ L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLP
Sbjct: 15  APVQANLATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLP 74

Query: 186 PLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQD 362
           PL+ EQ+ K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  D
Sbjct: 75  PLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTD 134

Query: 363 AAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV 491
           AA VL+E+AEC  EYPEAFIR++GFD  RQVQ   F+   P V
Sbjct: 135 AAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 162
Score (bit) 300.0
E-value 6.0e-80
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944371|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_N14, 5'
         (643 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   300   6e-80
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   205   2e-51
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   205   2e-51
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   202   2e-50
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   200   5e-50
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   200   7e-50
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   199   2e-49
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   192   2e-47
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   191   4e-47
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   191   4e-47
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   190   6e-47
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   188   2e-46
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   187   5e-46
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   187   6e-46
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   186   8e-46
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   183   9e-45
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   181   3e-44
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   181   4e-44
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   180   6e-44

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  300 bits (767), Expect = 6e-80
 Identities = 142/162 (87%), Positives = 153/162 (94%), Gaps = 1/162 (0%)
 Frame = +3

Query: 6   APSCAPA-ESLSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYL 182
           APSCA A ESLSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYL
Sbjct: 12  APSCAAAAESLSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYL 71

Query: 183 PPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQD 362
           PPL+++QIAKQV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D
Sbjct: 72  PPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTD 131

Query: 363 AAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           + +VLREIAECAKEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 132 SGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  205 bits (522), Expect = 2e-51
 Identities = 99/167 (59%), Positives = 125/167 (74%), Gaps = 6/167 (3%)
 Frame = +3

Query: 6   APSC--APAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLS 176
           A SC  AP+ES S K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET S
Sbjct: 48  ASSCVGAPSESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFS 107

Query: 177 YLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPM 347
           YLPPL+ +QIAKQVD+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPM
Sbjct: 108 YLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPM 167

Query: 348 FGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           FGC D++ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 168 FGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  205 bits (522), Expect = 2e-51
 Identities = 99/165 (60%), Positives = 122/165 (73%), Gaps = 4/165 (2%)
 Frame = +3

Query: 6   APSCAPAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYL 182
           +P+    ES S K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYL
Sbjct: 15  SPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYL 74

Query: 183 PPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFG 353
           PPL+ +QIAKQVDFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFG
Sbjct: 75  PPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFG 134

Query: 354 CQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           C D+A VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 135 CTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  202 bits (513), Expect = 2e-50
 Identities = 98/165 (59%), Positives = 121/165 (73%), Gaps = 4/165 (2%)
 Frame = +3

Query: 6   APSCAPAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYL 182
           +P+    ES S K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYL
Sbjct: 15  SPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYL 74

Query: 183 PPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFG 353
           PPL+ +QIAKQVDFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFG
Sbjct: 75  PPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFG 134

Query: 354 CQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           C D+A VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 135 CTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  200 bits (509), Expect = 5e-50
 Identities = 96/161 (59%), Positives = 118/161 (73%), Gaps = 4/161 (2%)
 Frame = +3

Query: 18  APAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLS 194
           A  ES S K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS
Sbjct: 24  ASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLS 83

Query: 195 SEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDA 365
            +QIA+QVD+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D+
Sbjct: 84  DDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDS 143

Query: 366 AAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           + VLREI EC   YP  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 144 SQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  200 bits (508), Expect = 7e-50
 Identities = 92/153 (60%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
 Frame = +3

Query: 39  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 218
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 219 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 389
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 390 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  199 bits (505), Expect = 2e-49
 Identities = 92/165 (55%), Positives = 122/165 (73%), Gaps = 4/165 (2%)
 Frame = +3

Query: 6   APSCAPAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYL 182
           +P+    +S S K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYL
Sbjct: 19  SPAAVSRDSTSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYL 78

Query: 183 PPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFG 353
           PPL+ ++IAKQVD+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFG
Sbjct: 79  PPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFG 138

Query: 354 CQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           C D++ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 139 CTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  192 bits (487), Expect = 2e-47
 Identities = 91/164 (55%), Positives = 115/164 (70%), Gaps = 5/164 (3%)
 Frame = +3

Query: 12  SCAPAESLS-----KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLS 176
           + +PA S S     K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET S
Sbjct: 18  AASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFS 77

Query: 177 YLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGC 356
           YLPPLS + IAKQV++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGC
Sbjct: 78  YLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGC 137

Query: 357 QDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           QD+A VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 138 QDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  191 bits (484), Expect = 4e-47
 Identities = 91/156 (58%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
 Frame = +3

Query: 24  AESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 200
           +ES S K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS +
Sbjct: 26  SESTSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDD 85

Query: 201 QIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 380
            IAKQVD+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLR
Sbjct: 86  AIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLR 145

Query: 381 EIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           EI EC K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 146 EIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  191 bits (484), Expect = 4e-47
 Identities = 91/156 (58%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
 Frame = +3

Query: 24  AESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 200
           +ES S K+FSGLK+ TLF+ +S    ++ NGSRV+ M VW P    KFET SYLPPLS +
Sbjct: 26  SESTSVKAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDD 85

Query: 201 QIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 380
            IAKQV++M+++   PC+EFD    V RE+    GYYDGRYW MWKLPMFGCQD+A VLR
Sbjct: 86  AIAKQVEYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLR 145

Query: 381 EIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 488
           EI EC K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 146 EIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181