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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944372
Clone id YMU02A01NGRL0005_N15
Library
Length 158
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_N15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGTACAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCACGCAAAATCCCGTGTGA
ATCAGCGAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGACCGATAGCGAAGCAGTAC
CGTGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944372|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_N15, 5'
         (128 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id A6H5B5
Definition tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Fragment) OS=Vigna unguiculata
Align length 40
Score (bit) 66.2
E-value 8.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944372|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_N15, 5'
         (128 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    66   8e-10
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    66   8e-10
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    66   8e-10
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    66   8e-10
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    66   8e-10
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            62   1e-08
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    56   1e-06
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    51   3e-05
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    50   4e-05
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    49   1e-04
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    49   2e-04
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    48   3e-04
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    48   3e-04
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    47   4e-04
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    47   4e-04
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    45   0.002
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte...    43   0.007
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen...    43   0.009
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    43   0.009
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen...    43   0.009
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen...    41   0.026
tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O...    41   0.034
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    40   0.044
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    40   0.044
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche...    40   0.044
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost...    39   0.17 
tr|B0MI66|B0MI66_9FIRM Putative uncharacterized protein (Fragmen...    39   0.17 
tr|A7B6K6|A7B6K6_RUMGN Putative uncharacterized protein OS=Rumin...    38   0.22 

>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +3

Query: 3   STASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 122
           S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 8   SITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47


>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +3

Query: 3   STASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 122
           S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 37  SITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +3

Query: 3   STASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 122
           S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 43  SITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +3

Query: 3   STASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 122
           S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 46  SITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +3

Query: 3   STASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 122
           S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 41  SITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
          Length = 44

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 29/37 (78%), Positives = 30/37 (81%)
 Frame = -1

Query: 128 PSRYCFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA 18
           PSRY FAIGH G+FSL RWS LIHTGF VPHAT V A
Sbjct: 8   PSRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA 44


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 25/33 (75%), Positives = 26/33 (78%)
 Frame = -1

Query: 128 PSRYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 30
           PSRY FAI H  +FSL RWS LIHTGF VPHAT
Sbjct: 240 PSRYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272


>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein
           OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1
          Length = 101

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -2

Query: 127 PHGTASLSVTQEYLALQGGPR*FTRDFACPMLL 29
           PHGT SLSV++EYLA +GGP  F +DF CP LL
Sbjct: 32  PHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALL 64


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
           OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
          Length = 259

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = -2

Query: 127 PHGTASLSVTQEYLALQGGPR*FTRDFACPMLL 29
           PHGT+SLSVT+EYL L+ GP  F +DF CP LL
Sbjct: 108 PHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALL 140


>tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragment)
           OS=Vibrio cholerae 1587 GN=A55_B0049 PE=4 SV=1
          Length = 171

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = -2

Query: 127 PHGTASLSVTQEYLALQGGPR*FTRDFACPMLL 29
           PHGT SLSV+QEYLAL+ GP  F +D  CP LL
Sbjct: 24  PHGTGSLSVSQEYLALEDGPPIFRQDITCPALL 56