DK944373 |
Clone id |
YMU02A01NGRL0005_N16 |
Library |
YMU02 |
Length |
492 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_N16. 5' end sequence. |
Accession |
DK944373 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL171Contig1 |
Sequence |
ATACAAGACCACTCTGAAATCTCTCAGGGGTGGGGAGGGTAAGCTTGTAATTATTTCTAA CAACTGCCCCCCACTAAGGAAGTCAGAAATTGAGTACTATGCGATGCTGTCGAAGACTGG TGTCCACCATTATACGGGAAATAATGTTGAGCTAGGAACAGCATGTGGAAGGTACTACAG GGTATGCTGCCTAAGTATTACCGACCCAGGTGATTCGGATATCATCAGGACCACAACTAC AGAGTAGATTGGGGCTTACTGGACAACATTCATTGCACTTTGTCTCAATGTCAGGGAGCG ATGCAGCGATCCAATTTTGCAGTTTCATTAGCTAAAGATGCTGGAGGACATTTTTCTGGC ATTGAGCCTCTTATGTATGGACAGAAGAATATTTCCTGATGCTAGTGATGGGTTACTCTT CATAGAATGTTTTGGGCTTAAGGACTTAAAAAAAATCAAAAAAAAAAAAAAAAAAAAAAA AAAAAAACTTGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O49884 |
Definition |
sp|O49884|RL30_LUPLU 60S ribosomal protein L30 OS=Lupinus luteus |
Align length |
77 |
Score (bit) |
144.0 |
E-value |
2.0e-34 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5X2V4 |
Definition |
tr|A5X2V4|A5X2V4_PTEVI Ribosomal protein OS=Pteris vittata |
Align length |
81 |
Score (bit) |
157.0 |
E-value |
2.0e-37 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944373|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_N16, 5' (447 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5X2V4|A5X2V4_PTEVI Ribosomal protein OS=Pteris vittata PE=4 ... 157 2e-37 tr|A9RK17|A9RK17_PHYPA Predicted protein OS=Physcomitrella paten... 151 1e-35 tr|A9SLL4|A9SLL4_PHYPA Predicted protein OS=Physcomitrella paten... 150 3e-35 tr|A9SR56|A9SR56_PHYPA Predicted protein OS=Physcomitrella paten... 149 5e-35 tr|A9S5P2|A9S5P2_PHYPA Predicted protein OS=Physcomitrella paten... 149 5e-35 tr|B7FKJ3|B7FKJ3_MEDTR Putative uncharacterized protein OS=Medic... 144 2e-33 tr|B2D293|B2D293_9ACAR Ribosomal protein L30 (Fragment) OS=Ornit... 143 4e-33 tr|A6N9U7|A6N9U7_ORNPR Ribosomal protein L30 OS=Ornithodoros par... 143 4e-33 tr|Q6B8A6|Q6B8A6_9ACAR Ribosomal protein L30 OS=Ixodes pacificus... 143 5e-33 tr|Q4PMD6|Q4PMD6_IXOSC Ribosomal protein L30 OS=Ixodes scapulari... 143 5e-33 tr|A7X6P5|A7X6P5_PEA Ribosomal protein L30e OS=Pisum sativum PE=... 142 6e-33 tr|A9PBT5|A9PBT5_POPTR Putative uncharacterized protein OS=Popul... 142 1e-32 tr|Q8ITC5|Q8ITC5_AEQIR Ribosomal protein L30 OS=Aequipecten irra... 140 3e-32 tr|A9PD08|A9PD08_POPTR Putative uncharacterized protein OS=Popul... 139 5e-32 tr|B6U9H6|B6U9H6_MAIZE 60S ribosomal protein L30 OS=Zea mays PE=... 139 9e-32 tr|B6SYS9|B6SYS9_MAIZE 60S ribosomal protein L30 OS=Zea mays PE=... 139 9e-32 tr|A9UDU0|A9UDU0_9BILA Putative 60S ribosomal protein RPL30 OS=F... 138 1e-31 tr|Q6F331|Q6F331_ORYSJ Os05g0490100 protein OS=Oryza sativa subs... 138 2e-31 tr|A3B5C5|A3B5C5_ORYSJ Putative uncharacterized protein OS=Oryza... 138 2e-31 tr|B5M6F8|B5M6F8_ORNHU 60S ribosomal protein L30 OS=Ornithoctonu... 138 2e-31 tr|A7PL46|A7PL46_VITVI Chromosome chr7 scaffold_20, whole genome... 137 3e-31 tr|A4S9B9|A4S9B9_OSTLU Ribosomal protein L30, component of cytos... 137 3e-31 tr|A9QQ32|A9QQ32_LYCSI 60S ribosomal protein L30 OS=Lycosa singo... 137 3e-31 tr|A7NV31|A7NV31_VITVI Chromosome chr18 scaffold_1, whole genome... 136 6e-31 tr|Q0JNP0|Q0JNP0_ORYSJ cDNA clone:001-009-A11, full insert seque... 135 8e-31 tr|B8ACI7|B8ACI7_ORYSI Putative uncharacterized protein OS=Oryza... 135 8e-31 tr|A2ZRR8|A2ZRR8_ORYSJ Putative uncharacterized protein OS=Oryza... 135 8e-31 tr|Q4GXB5|Q4GXB5_9DYTI Ribosomal protein L30e (Fragment) OS=Mela... 135 8e-31 tr|B6SJ19|B6SJ19_MAIZE 60S ribosomal protein L30 OS=Zea mays PE=... 135 1e-30 tr|A9PC11|A9PC11_POPTR Putative uncharacterized protein OS=Popul... 135 1e-30
>tr|A5X2V4|A5X2V4_PTEVI Ribosomal protein OS=Pteris vittata PE=4 SV=1 Length = 111
Score = 157 bits (398), Expect = 2e-37 Identities = 73/81 (90%), Positives = 77/81 (95%) Frame = +2
Query: 2 YKTTLKSLRGGEGKLVIISNNCPPLRKSEIEYYAMLSKTGVHHYTGNNVELGTACGRYYR 181 YKTTLKSLR G+GKLVII+NNCPPLRKSEIEYYAMLSKTGVHHYTGNNV+LGTACGRYYR Sbjct: 31 YKTTLKSLRSGKGKLVIIANNCPPLRKSEIEYYAMLSKTGVHHYTGNNVDLGTACGRYYR 90
Query: 182 VCCLSITDPGDSDIIRTTTTE 244 VCCLSITDPGDSDIIR +E Sbjct: 91 VCCLSITDPGDSDIIRVMPSE 111
>tr|A9RK17|A9RK17_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_203185 PE=4 SV=1 Length = 113
Score = 151 bits (382), Expect = 1e-35 Identities = 70/81 (86%), Positives = 77/81 (95%) Frame = +2
Query: 2 YKTTLKSLRGGEGKLVIISNNCPPLRKSEIEYYAMLSKTGVHHYTGNNVELGTACGRYYR 181 Y TTLKSLRGG+GKLVII+NNCPPLRKSEIEYYAMLSKTGVHHY+GNNV+LGTACG+Y+R Sbjct: 31 YTTTLKSLRGGKGKLVIIANNCPPLRKSEIEYYAMLSKTGVHHYSGNNVDLGTACGKYFR 90
Query: 182 VCCLSITDPGDSDIIRTTTTE 244 VC LSITDPGDSDIIR+ TE Sbjct: 91 VCTLSITDPGDSDIIRSMPTE 111
>tr|A9SLL4|A9SLL4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_213651 PE=4 SV=1 Length = 113
Score = 150 bits (379), Expect = 3e-35 Identities = 69/80 (86%), Positives = 77/80 (96%) Frame = +2
Query: 2 YKTTLKSLRGGEGKLVIISNNCPPLRKSEIEYYAMLSKTGVHHYTGNNVELGTACGRYYR 181 Y TTLKSLRGG+GKLVII+NNCPPLRKSEIEYYAMLSKTGVHHY+GNNV+LGTACG+Y+R Sbjct: 31 YTTTLKSLRGGKGKLVIIANNCPPLRKSEIEYYAMLSKTGVHHYSGNNVDLGTACGKYFR 90
Query: 182 VCCLSITDPGDSDIIRTTTT 241 VC LSITDPGDSDIIR+ +T Sbjct: 91 VCTLSITDPGDSDIIRSMST 110
>tr|A9SR56|A9SR56_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_133797 PE=4 SV=1 Length = 113
Score = 149 bits (377), Expect = 5e-35 Identities = 69/80 (86%), Positives = 76/80 (95%) Frame = +2
Query: 2 YKTTLKSLRGGEGKLVIISNNCPPLRKSEIEYYAMLSKTGVHHYTGNNVELGTACGRYYR 181 Y TTLKSLRGG+GKLVII+NNCPPLRKSEIEYYAMLSKTGVHHY+GNNV+LGTACG+Y+R Sbjct: 31 YTTTLKSLRGGKGKLVIIANNCPPLRKSEIEYYAMLSKTGVHHYSGNNVDLGTACGKYFR 90
Query: 182 VCCLSITDPGDSDIIRTTTT 241 VC LSITDPGDSDIIR+ T Sbjct: 91 VCTLSITDPGDSDIIRSMPT 110
>tr|A9S5P2|A9S5P2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_181527 PE=4 SV=1 Length = 112
Score = 149 bits (377), Expect = 5e-35 Identities = 69/80 (86%), Positives = 76/80 (95%) Frame = +2
Query: 2 YKTTLKSLRGGEGKLVIISNNCPPLRKSEIEYYAMLSKTGVHHYTGNNVELGTACGRYYR 181 Y TTLKSLRGG+GKLVII+NNCPPLRKSEIEYYAMLSKTGVHHY+GNNV+LGTACG+Y+R Sbjct: 31 YTTTLKSLRGGKGKLVIIANNCPPLRKSEIEYYAMLSKTGVHHYSGNNVDLGTACGKYFR 90
Query: 182 VCCLSITDPGDSDIIRTTTT 241 VC LSITDPGDSDIIR+ T Sbjct: 91 VCTLSITDPGDSDIIRSMPT 110
>tr|B7FKJ3|B7FKJ3_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1 Length = 112
Score = 144 bits (363), Expect = 2e-33 Identities = 64/77 (83%), Positives = 71/77 (92%) Frame = +2
Query: 2 YKTTLKSLRGGEGKLVIISNNCPPLRKSEIEYYAMLSKTGVHHYTGNNVELGTACGRYYR 181 YKT LKSLR +GKL+II+NNCPPLRKSEIEYYAML+K GVHHY GNNV+LGTACG+YYR Sbjct: 31 YKTVLKSLRNNKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYR 90
Query: 182 VCCLSITDPGDSDIIRT 232 VCCLSI DPGDSDII+T Sbjct: 91 VCCLSIVDPGDSDIIKT 107
>tr|B2D293|B2D293_9ACAR Ribosomal protein L30 (Fragment) OS=Ornithodoros coriaceus PE=2 SV=1 Length = 105
Score = 143 bits (361), Expect = 4e-33 Identities = 65/81 (80%), Positives = 75/81 (92%) Frame = +2
Query: 2 YKTTLKSLRGGEGKLVIISNNCPPLRKSEIEYYAMLSKTGVHHYTGNNVELGTACGRYYR 181 +K T+K+LR G+ KLVII+NN PPLRKSEIEYYAML+KTGVHHYTGNN+ELGTACG+YYR Sbjct: 24 HKQTIKTLRQGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYYR 83
Query: 182 VCCLSITDPGDSDIIRTTTTE 244 VCCLSITDPGDSDIIR+ +E Sbjct: 84 VCCLSITDPGDSDIIRSMPSE 104
>tr|A6N9U7|A6N9U7_ORNPR Ribosomal protein L30 OS=Ornithodoros parkeri PE=4 SV=1 Length = 112
Score = 143 bits (361), Expect = 4e-33 Identities = 65/81 (80%), Positives = 75/81 (92%) Frame = +2
Query: 2 YKTTLKSLRGGEGKLVIISNNCPPLRKSEIEYYAMLSKTGVHHYTGNNVELGTACGRYYR 181 +K T+K+LR G+ KLVII+NN PPLRKSEIEYYAML+KTGVHHYTGNN+ELGTACG+YYR Sbjct: 31 HKQTIKTLRQGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYYR 90
Query: 182 VCCLSITDPGDSDIIRTTTTE 244 VCCLSITDPGDSDIIR+ +E Sbjct: 91 VCCLSITDPGDSDIIRSMPSE 111
>tr|Q6B8A6|Q6B8A6_9ACAR Ribosomal protein L30 OS=Ixodes pacificus PE=4 SV=1 Length = 112
Score = 143 bits (360), Expect = 5e-33 Identities = 64/81 (79%), Positives = 75/81 (92%) Frame = +2
Query: 2 YKTTLKSLRGGEGKLVIISNNCPPLRKSEIEYYAMLSKTGVHHYTGNNVELGTACGRYYR 181 +K T+K+LR G+ KL+II+NN PPLRKSEIEYYAML+KTGVHHYTGNN+ELGTACG+YYR Sbjct: 31 HKQTIKTLRQGKAKLIIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYYR 90
Query: 182 VCCLSITDPGDSDIIRTTTTE 244 VCCLSITDPGDSDIIR+ +E Sbjct: 91 VCCLSITDPGDSDIIRSMPSE 111
>tr|Q4PMD6|Q4PMD6_IXOSC Ribosomal protein L30 OS=Ixodes scapularis PE=4 SV=1 Length = 112
Score = 143 bits (360), Expect = 5e-33 Identities = 64/81 (79%), Positives = 75/81 (92%) Frame = +2
Query: 2 YKTTLKSLRGGEGKLVIISNNCPPLRKSEIEYYAMLSKTGVHHYTGNNVELGTACGRYYR 181 +K T+K+LR G+ KL+II+NN PPLRKSEIEYYAML+KTGVHHYTGNN+ELGTACG+YYR Sbjct: 31 HKQTIKTLRQGKAKLIIIANNTPPLRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYYR 90
Query: 182 VCCLSITDPGDSDIIRTTTTE 244 VCCLSITDPGDSDIIR+ +E Sbjct: 91 VCCLSITDPGDSDIIRSMPSE 111
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