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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944376
Clone id YMU02A01NGRL0005_N19
Library
Length 774
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_N19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
CCAGATCTCCAGATGCACACATCAGAGGGAGAGAGATTGCACCCAATACTCAATATGGCC
ATCTACATAACCGCTTCCTCGTCCGGTGTCACTCCTAGCTGCGCCCCCGCAGAGAGCTTG
TCACAGCGCCTCTGTGCTCTCAGGGCCTCTACCGTGCTCTCCCCCGAGACCCCCACCCCG
CTCGCCATCTAACATGGCCGCCGTGTGAGCCCCGTGCTTGTGGGGAATCCGTAAGACCAC
GATAATCTCGAGACTCTCTCCCACGTGCCCCCTTTGTCGTGTGAACATATTGCAAATCGA
GTGCACATCACGGTCCGAAAACTCTACACCCCGTGCATTGAGTTCCACAAAATCGATGAG
CGTGCACCGAGAGCACTTCCACGGCAGCCGCTACCACTATGAGCGATTCTGCGTGATGTG
AACTCTGCACATGTGTGTCTGCCAAGATGACTCTTCTGCGCTGCGAGAAATTGCAGAGCG
CGCCTAGGAATATTCAGAAGCCTTCATCCGCGTGCTGCGATGTCGCGCTTATAGGCGTGT
GCAGGTCTACAGCTTCCGTGTCCAAACCCTCTCTTTCTAAACTTTAATAACACACGCAAA
TTTATCTCTTAAGGAAGTCTGGCCTCCTTTTCCCCCCTGGCCCCCCAAACCTTGTGCTTT
TTTTGATCTTTGTTGTTTCCCAAACCTTTTTTGTAGATTTTTAATTACAAAAATCTCTCC
CAAAGGTGGTTGTCTTTCTTTTTGGCCTAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 67
Score (bit) 48.9
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944376|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_N19, 5'
         (748 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...    49   2e-11
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...    45   4e-11
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...    43   1e-10
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...    43   1e-10
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...    45   1e-10
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...    42   3e-10
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...    41   2e-09
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...    44   2e-09
sp|P00868|RBS1_PEA Ribulose bisphosphate carboxylase small chain...    40   3e-09
sp|Q08183|RBS3_MESCR Ribulose bisphosphate carboxylase small cha...    43   4e-09
sp|P16032|RBS1_MESCR Ribulose bisphosphate carboxylase small cha...    43   4e-09
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...    42   4e-09
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...    42   4e-09
sp|Q08184|RBS4_MESCR Ribulose bisphosphate carboxylase small cha...    43   5e-09
sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small cha...    44   5e-09
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...    41   5e-09
sp|P16881|RBS_EUGGR Ribulose bisphosphate carboxylase small chai...    40   6e-09
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...    40   7e-09
sp|Q08186|RBS6_MESCR Ribulose bisphosphate carboxylase small cha...    43   9e-09
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...    42   9e-09
sp|P00865|RBS1_SOYBN Ribulose bisphosphate carboxylase small cha...    42   1e-08
sp|Q04450|RBS2_MESCR Ribulose bisphosphate carboxylase small cha...    41   2e-08
sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small cha...    43   2e-08
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...    40   2e-08
sp|P12468|RBS4_SOYBN Ribulose bisphosphate carboxylase small cha...    41   2e-08
sp|O22077|RBS_FAGCR Ribulose bisphosphate carboxylase small chai...    41   3e-08
sp|Q42823|RBS_GLYTA Ribulose bisphosphate carboxylase small chai...    44   3e-08
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha...    42   3e-08
sp|Q08185|RBS5_MESCR Ribulose bisphosphate carboxylase small cha...    43   3e-08
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...    42   3e-08

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score = 48.9 bits (115), Expect(2) = 2e-11
 Identities = 27/67 (40%), Positives = 36/67 (53%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           V+REH H   Y+  R+  M  L M  C D +  ++E+ E   EY  AFIRV+     R+V
Sbjct: 108 VYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQV 167

Query: 542 QVYSFRV 562
           Q  SF V
Sbjct: 168 QCISFIV 174



 Score = 38.9 bits (89), Expect(2) = 2e-11
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 193 HGRRVSPVLVGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           +G RV  + V  P      ETLS++PPLS E ++  +   +R  + PC+EF
Sbjct: 51  NGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEF 101


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score = 44.7 bits (104), Expect(2) = 4e-11
 Identities = 25/65 (38%), Positives = 34/65 (52%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           V+REH     Y+  R+  M  L M  C D S  L+E+ E    Y  AFIR++     R+V
Sbjct: 110 VYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQV 169

Query: 542 QVYSF 556
           Q+ SF
Sbjct: 170 QIISF 174



 Score = 42.0 bits (97), Expect(2) = 4e-11
 Identities = 22/51 (43%), Positives = 29/51 (56%)
 Frame = +1

Query: 193 HGRRVSPVLVGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           +G RV  + V  P      ETLS++PPLS E +A  V   +RK   PC+EF
Sbjct: 53  NGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEF 103


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score = 43.1 bits (100), Expect(2) = 1e-10
 Identities = 22/51 (43%), Positives = 30/51 (58%)
 Frame = +1

Query: 193 HGRRVSPVLVGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           +G RV  + V  P      ETLS++PPLS E +A  V   +RK + PC+EF
Sbjct: 54  NGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEF 104



 Score = 41.6 bits (96), Expect(2) = 1e-10
 Identities = 23/65 (35%), Positives = 34/65 (52%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           V+RE+     Y+  R+  M  L M  C D S  L+E+ E    Y ++FIR++     R+V
Sbjct: 111 VYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQV 170

Query: 542 QVYSF 556
           Q  SF
Sbjct: 171 QCISF 175


>sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1
          Length = 183

 Score = 43.1 bits (100), Expect(2) = 1e-10
 Identities = 22/51 (43%), Positives = 30/51 (58%)
 Frame = +1

Query: 193 HGRRVSPVLVGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           +G RV  + V  P      ETLS++PPLS E +A  V   +RK + PC+EF
Sbjct: 54  NGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEF 104



 Score = 41.6 bits (96), Expect(2) = 1e-10
 Identities = 23/65 (35%), Positives = 34/65 (52%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           V+RE+     Y+  R+  M  L M  C D S  L+E+ E    Y ++FIR++     R+V
Sbjct: 111 VYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQV 170

Query: 542 QVYSF 556
           Q  SF
Sbjct: 171 QCISF 175


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score = 45.1 bits (105), Expect(2) = 1e-10
 Identities = 25/65 (38%), Positives = 35/65 (53%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           V+REH +   Y+  R+  M  L M  C D +  L E+ E   EY  AFIR++   + R+V
Sbjct: 108 VYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQV 167

Query: 542 QVYSF 556
           Q  SF
Sbjct: 168 QCVSF 172



 Score = 39.7 bits (91), Expect(2) = 1e-10
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
 Frame = +1

Query: 55  MAIYITASSSGVTPSCAPAESLSQRLCALRASTVLSPETP-----TPLAI*HGRRVSPVL 219
           MA  + +S++  T S  PA++          STV  P T      T LA  +G RV  + 
Sbjct: 1   MASSVLSSAAVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLAS-NGGRVQCMK 59

Query: 220 VGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           V    +    ETLS++PPL+ + +A +V   +   + PC+EF
Sbjct: 60  VWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEF 101


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score = 42.0 bits (97), Expect(2) = 3e-10
 Identities = 25/69 (36%), Positives = 36/69 (52%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           VHR++     Y+  R+  M  L +    D +  L+E+AE   EY EAFIR++     R+V
Sbjct: 106 VHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQV 165

Query: 542 QVYSFRVQT 568
           Q  SF   T
Sbjct: 166 QCISFIAST 174



 Score = 41.6 bits (96), Expect(2) = 3e-10
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +1

Query: 193 HGRRVSPVLVGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           +G RV+ + V  P      ETLS++PPL+ E +   V   +RK + PC+EF
Sbjct: 49  NGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEF 99


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score = 41.2 bits (95), Expect(2) = 2e-09
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           V+REH     Y+  R+  M  L M  C D +  L E+ E    Y +A+IR++     R+V
Sbjct: 108 VYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQV 167

Query: 542 QVYSF 556
           Q  SF
Sbjct: 168 QCISF 172



 Score = 39.3 bits (90), Expect(2) = 2e-09
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +1

Query: 193 HGRRVSPVLVGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           +G RV  +LV  P +    ETLS++P LS E +   +   ++K + PC+EF
Sbjct: 51  NGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEF 101


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score = 43.5 bits (101), Expect(2) = 2e-09
 Identities = 24/65 (36%), Positives = 35/65 (53%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           V+REH +   Y+  R+  M  L +  C D +  L+E+ E   EY  AFIR++     R+V
Sbjct: 106 VYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQV 165

Query: 542 QVYSF 556
           Q  SF
Sbjct: 166 QCISF 170



 Score = 37.0 bits (84), Expect(2) = 2e-09
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 193 HGRRVSPVLVGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           +G RV+ + V  P      ETLS++P L+   +A  V   +R  + PC+EF
Sbjct: 49  NGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEF 99


>sp|P00868|RBS1_PEA Ribulose bisphosphate carboxylase small chain,
           chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1
          Length = 136

 Score = 40.0 bits (92), Expect(2) = 3e-09
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 193 HGRRVSPVLVGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           +G RV  + V  P      ETLS++PPL+ + +   V   +RK + PC+EF
Sbjct: 7   NGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEF 57



 Score = 40.0 bits (92), Expect(2) = 3e-09
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           V+ EH    RY+  R+  M  L M    D +  ++E+ E    Y EAF+RV+     R+V
Sbjct: 64  VYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQV 123

Query: 542 QVYSFRVQT 568
           Q  SF   T
Sbjct: 124 QCISFIAHT 132


>sp|Q08183|RBS3_MESCR Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Mesembryanthemum crystallinum
           GN=RBCS-3 PE=2 SV=1
          Length = 183

 Score = 42.7 bits (99), Expect(2) = 4e-09
 Identities = 25/65 (38%), Positives = 34/65 (52%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           V+REH +   Y+  R+  M  L M  C D S  + E+ E    Y EAFIR++     R+V
Sbjct: 109 VYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQV 168

Query: 542 QVYSF 556
           Q  SF
Sbjct: 169 QCISF 173



 Score = 37.0 bits (84), Expect(2) = 4e-09
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +1

Query: 193 HGRRVSPVLVGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           +G RV  + V  P      ETLS++PPLS E +   V   +   + PC+EF
Sbjct: 52  NGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEF 102
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 88
Score (bit) 82.8
E-value 4.0e-29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944376|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_N19, 5'
         (748 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...    83   4e-29
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...    52   2e-11
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...    52   3e-11
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...    51   6e-11
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...    50   1e-10
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...    50   2e-10
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...    53   3e-10
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...    49   3e-10
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...    50   5e-10
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...    52   5e-10
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...    50   5e-10
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...    51   6e-10
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...    51   8e-10
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...    51   8e-10
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...    50   8e-10
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...    49   8e-10
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...    45   1e-09
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...    49   2e-09
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...    50   2e-09
tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small c...    45   4e-09
tr|Q43115|Q43115_9ROSA Ribulose bisphosphate carboxylase small c...    43   4e-09
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...    50   5e-09
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...    49   5e-09
tr|B7FHB2|B7FHB2_MEDTR Putative uncharacterized protein OS=Medic...    43   5e-09
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...    48   1e-08
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...    46   1e-08
tr|B3H5S2|B3H5S2_ARATH Uncharacterized protein At5g38410.3 OS=Ar...    44   2e-08
tr|Q5VBK1|Q5VBK1_DUNTE Ribulose bisphosphate carboxylase small c...    48   2e-08
tr|Q84U91|Q84U91_VOLCA Ribulose bisphosphate carboxylase small c...    47   2e-08
tr|A9TWX2|A9TWX2_PHYPA Ribulose bisphosphate carboxylase small c...    46   2e-08

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score = 82.8 bits (203), Expect(2) = 4e-29
 Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
 Frame = +1

Query: 94  PSCAPA-ESLSQRLCALRASTVLSPETPTPLAI*HGRRVSPVLVGNP*DHDNLETLSHVP 270
           PSCA A ESLS+    L+A+T+ +P+   PLAI +G R+S +LV  P D+   ETLS++P
Sbjct: 13  PSCAAAAESLSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLP 72

Query: 271 PLSCEHIANRVHITVRKLYTPCIEFHKI 354
           PL+ + IA +V   VRK +TPCIEF  I
Sbjct: 73  PLTNDQIAKQVEYMVRKGWTPCIEFDTI 100



 Score = 68.6 bits (166), Expect(2) = 4e-29
 Identities = 39/69 (56%), Positives = 45/69 (65%)
 Frame = +2

Query: 359 SVHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRR 538
           SV+REHFHGS Y+  R+ +M  L M  C D  S LREIAE A EY  AFIRVL   A R+
Sbjct: 102 SVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQ 161

Query: 539 VQVYSFRVQ 565
           VQV  F V+
Sbjct: 162 VQVAGFLVK 170


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score = 52.4 bits (124), Expect(2) = 2e-11
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
 Frame = +1

Query: 85  GVTPSC--APAESLSQR-LCALRASTVLSPETPTPLAI*HGRRVSPVLVGNP*DHDNLET 255
           G   SC  AP+ES S +    L+++T+ S +T    ++ +G RV  + V NP      ET
Sbjct: 46  GGASSCVGAPSESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFET 105

Query: 256 LSHVPPLSCEHIANRVHITVRKLYTPCIEFHKI 354
            S++PPL+ + IA +V   +++   PCIEF  +
Sbjct: 106 FSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTV 138



 Score = 39.3 bits (90), Expect(2) = 2e-11
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +2

Query: 359 SVHREHFHG---SRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRA 529
           SV R +F G   S Y+  R+  M  L M  C D S  LREI E   ++   ++RVL   +
Sbjct: 140 SVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDS 199

Query: 530 YRRVQVYSFRV 562
            ++VQ+  F V
Sbjct: 200 KKQVQICGFLV 210


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score = 51.6 bits (122), Expect(2) = 3e-11
 Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
 Frame = +1

Query: 58  AIYITASSSGVTPSCAPAESLSQR-LCALRASTVLSPETPTPLAI*HGRRVSPVLVGNP* 234
           ++    S +  +P+    +S S +    L+++T+ S +  T  ++ +G RV  + V NP 
Sbjct: 8   SVVAPVSLAAASPAAVSRDSTSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPI 67

Query: 235 DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEFHKI 354
                ET S++PPL+ + IA +V   +++   PCIEF  +
Sbjct: 68  GQPKFETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTV 107



 Score = 39.3 bits (90), Expect(2) = 3e-11
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +2

Query: 359 SVHREHFHG---SRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRA 529
           SV R +F G   S Y+  R+  M  L M  C D S  LREI E   ++   ++RVL   +
Sbjct: 109 SVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDS 168

Query: 530 YRRVQVYSFRV 562
            ++VQ+  F V
Sbjct: 169 KKQVQICGFLV 179


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score = 50.8 bits (120), Expect(2) = 6e-11
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
 Frame = +1

Query: 73  ASSSGVTPSCAPAESLSQR-LCALRASTVLSPETPTPLAI*HGRRVSPVLVGNP*DHDNL 249
           A+SSGV+ S    ES S +    L+++T+ S ++    ++ +G RV+ + V NP      
Sbjct: 18  AASSGVSTS----ESTSVKAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKF 73

Query: 250 ETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           ET S++PPLS + IA +V   +++   PC+EF
Sbjct: 74  ETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEF 105



 Score = 39.3 bits (90), Expect(2) = 6e-11
 Identities = 26/75 (34%), Positives = 35/75 (46%)
 Frame = +2

Query: 338 LSSTKSMSVHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVL 517
           L    S  V RE+     Y+  R+  M  L M  CQD +  LREI E    +   F+RVL
Sbjct: 103 LEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVL 162

Query: 518 RCRAYRRVQVYSFRV 562
                ++VQ+  F V
Sbjct: 163 GFDNVKQVQICGFLV 177


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score = 50.1 bits (118), Expect(2) = 1e-10
 Identities = 27/67 (40%), Positives = 37/67 (55%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           V+REH H   Y+  R+  M  L M  C D +  ++E+ E   EY  AFIRV+   + R+V
Sbjct: 108 VYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQV 167

Query: 542 QVYSFRV 562
           Q  SF V
Sbjct: 168 QCISFIV 174



 Score = 39.3 bits (90), Expect(2) = 1e-10
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 193 HGRRVSPVLVGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           +G RV  + V  P      ETLS++PPLS E ++  +   +R  + PC+EF
Sbjct: 51  NGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEF 101


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score = 49.7 bits (117), Expect(2) = 2e-10
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
 Frame = +1

Query: 61  IYITASSSGVTPSCAPAESLSQR-LCALRASTVLSPETPTPLAI*HGRRVSPVLVGNP*D 237
           + +T +SS V  S    ES S +    L+++T+ + ++    ++ +G RV  + V NP  
Sbjct: 13  VSVTVASSSVAAS---RESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIG 69

Query: 238 HDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEFHKI 354
               ET S++PPLS + IA +V   +++   PCIEF  +
Sbjct: 70  QPKFETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTV 108



 Score = 38.9 bits (89), Expect(2) = 2e-10
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +2

Query: 359 SVHREHFHGSR---YHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRA 529
           +V R +F GS    Y+  R+  M  L M  C D S  LREI E    Y   ++RVL   +
Sbjct: 110 AVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDS 169

Query: 530 YRRVQVYSFRV 562
            ++VQ+  F V
Sbjct: 170 KKQVQICGFLV 180


>tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_201973 PE=3 SV=1
          Length = 184

 Score = 52.8 bits (125), Expect(2) = 3e-10
 Identities = 32/96 (33%), Positives = 53/96 (55%)
 Frame = +1

Query: 58  AIYITASSSGVTPSCAPAESLSQRLCALRASTVLSPETPTPLAI*HGRRVSPVLVGNP*D 237
           A ++ ASSSGV+ S A +    +    L+++T+ S       ++ +G RV  + V NP  
Sbjct: 15  AAFVAASSSGVSTSEATSV---KAFSGLKSTTLFSGNARKLSSVQNGSRVQCMQVWNPIG 71

Query: 238 HDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
               ET S++PPLS + IA +V   +++   PC+EF
Sbjct: 72  MTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEF 107



 Score = 35.0 bits (79), Expect(2) = 3e-10
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = +2

Query: 353 SMSVHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAY 532
           S  V R +     Y+  R+  M  L M  CQD +  LREI E    +   ++RVL     
Sbjct: 111 SNGVSRVNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCYVRVLGFDNV 170

Query: 533 RRVQVYSFRV 562
           ++VQ+  F V
Sbjct: 171 KQVQICGFLV 180


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score = 48.5 bits (114), Expect(2) = 3e-10
 Identities = 30/94 (31%), Positives = 49/94 (52%)
 Frame = +1

Query: 73  ASSSGVTPSCAPAESLSQRLCALRASTVLSPETPTPLAI*HGRRVSPVLVGNP*DHDNLE 252
           ASS   +   A  ++ S     L+ +T+ S +T    A+ +G RV  + V NP      E
Sbjct: 19  ASSVAASNESATVKAFS----GLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFE 74

Query: 253 TLSHVPPLSCEHIANRVHITVRKLYTPCIEFHKI 354
           T S++PPL+ + IA +V   +++   PCIEF  +
Sbjct: 75  TFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTV 108



 Score = 39.3 bits (90), Expect(2) = 3e-10
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +2

Query: 359 SVHREHFHG---SRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRA 529
           SV R +F G   S Y+  R+  M  L M  C D S  LREI E   ++   ++RVL   +
Sbjct: 110 SVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDS 169

Query: 530 YRRVQVYSFRV 562
            ++VQ+  F V
Sbjct: 170 KKQVQICGFLV 180


>tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_106210 PE=3 SV=1
          Length = 182

 Score = 50.4 bits (119), Expect(2) = 5e-10
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
 Frame = +1

Query: 67  ITASSSGVTPSCAPAESLS---------QRLCALRASTVLSPETPTPLAI*HGRRVSPVL 219
           + A+SS V P+   A S S         +    L+++T+ + +  T  ++ +G RV  + 
Sbjct: 4   VVAASSVVAPATFVAASSSVSNSKSNSVKAFSGLKSATLFTSKAETLSSVQNGSRVQCMQ 63

Query: 220 VGNP*DHDNLETLSHVPPLSCEHIANRVHITVRKLYTPCIEF 345
           V NP      ET S++PPLS + IA +V   +++   PC+EF
Sbjct: 64  VWNPIGQTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEF 105



 Score = 36.6 bits (83), Expect(2) = 5e-10
 Identities = 24/70 (34%), Positives = 33/70 (47%)
 Frame = +2

Query: 353 SMSVHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAY 532
           S  V R +     Y+  R+  M  L M  CQD +  LREI E    +   F+RVL     
Sbjct: 109 SNGVSRANNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNV 168

Query: 533 RRVQVYSFRV 562
           ++VQ+  F V
Sbjct: 169 KQVQICGFLV 178


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score = 51.6 bits (122), Expect(2) = 5e-10
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
 Frame = +1

Query: 73  ASSSGVTPSCAPAESLSQR-LCALRASTVLSPETPTPLAI*HGRRVSPVLVGNP*DHDNL 249
           ASSS V+ S    ES S +    L++ST+ S +  +  ++ +G RV  + V NP      
Sbjct: 18  ASSSAVSTS----ESTSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKF 73

Query: 250 ETLSHVPPLSCEHIANRVHITVRKLYTPCIEFHKID 357
           ET S++PPLS + IA +V   +++   PC+EF   D
Sbjct: 74  ETFSYLPPLSDDAIAKQVDYMIQQKLIPCLEFDNAD 109



 Score = 35.4 bits (80), Expect(2) = 5e-10
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = +2

Query: 362 VHREHFHGSRYHYERFCVM*TLHMCVCQDDSSALREIAERA*EYSEAFIRVLRCRAYRRV 541
           V R +     Y+  R+  M  L M  CQD +  LREI E    +   F+RVL     ++V
Sbjct: 111 VSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQV 170

Query: 542 QVYSFRV 562
           Q+  F V
Sbjct: 171 QICGFLV 177