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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944387
Clone id YMU02A01NGRL0005_O06
Library
Length 368
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_O06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTTTGGAACTCGTTGGTCTTGGCTACAGTGGTTGGTTTGTGTACAGATACCTTCTTTTT
AAGGAGAGCAGGAAGGAGCTAGCCGTGGAAATTGAGGAGCTAAAGGGTAAGATCACCGGA
GCTGTGAAAGAGTAGCTGGAAAGGAGTGAAGATAATTTTCCCTTCCCCTCGCATGCTTTC
TCTACAGTTTTGCTTTGTTGCTGGCCTTGTAAATACAATGGCTTGAGTTTTGTGGACCTA
AGCCATGGACAGGGAACTACTGTATGTCTTAGCTCTTTAGAGTCTTTCCGTGTATCCATA
CTGCAAATGAGGAACATTGTGAAGATGGACCTTTATTGCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
■■Homology search results ■■ -
sp_hit_id O04616
Definition sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana
Align length 41
Score (bit) 68.9
E-value 7.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944387|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_O06, 5'
         (339 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chlorop...    69   7e-12
sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, ...    44   3e-04
sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strai...    34   0.20 
sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago...    32   0.75 
sp|Q3HXY8|NGFV2_PSETE Venom nerve growth factor 2 OS=Pseudonaja ...    30   2.9  
sp|Q3HXY9|NGFV1_PSETE Venom nerve growth factor 1 OS=Pseudonaja ...    30   2.9  
sp|P64594|YHAV_ECOLI Uncharacterized protein yhaV OS=Escherichia...    30   3.7  
sp|P64595|YHAV_ECO57 Uncharacterized protein yhaV OS=Escherichia...    30   3.7  
sp|Q5YF90|NGFV1_NAJSP Venom nerve growth factor 1 OS=Naja sputat...    29   6.4  
sp|A0RYF4|TFE_CENSY Transcription factor E OS=Cenarchaeum symbio...    29   8.3  
sp|P30550|GRPR_HUMAN Gastrin-releasing peptide receptor OS=Homo ...    29   8.3  
sp|Q08378|GOGA3_HUMAN Golgin subfamily A member 3 OS=Homo sapien...    29   8.3  

>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150,
           chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1
           SV=1
          Length = 164

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITGA 123
           V+ELVGLGY+GWFVYRYLLFK SRKELA +IE LK KI G+
Sbjct: 123 VMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163


>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa,
           chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
          Length = 174

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITGA 123
           VLELVG+GY+GWF Y+ L+FK  R+ L  +++     I G+
Sbjct: 133 VLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGS 173


>sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strain PCC
            7120) GN=valS PE=3 SV=1
          Length = 1014

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 7    ELVGLGYSGWFVYRYLLFKESRKELAVEI--EELKGKITGAVKE*LERSE 150
            E+VGLGYS WFV R LL   +RK    +      +  ++G V++  E +E
Sbjct: 879  EIVGLGYSAWFVTRNLLSTPARKRFLAKFFAPPTEKNLSGTVQQAPEAAE 928


>sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago
           maydis GN=DBP3 PE=3 SV=1
          Length = 585

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 85  VEIEELKGKITGAVKE*LERSEDNFPFPSHAFSTVLLCCWPCKYNGLSFVDLSH-GQGTT 261
           V+  EL GK+  AVK+ L+    + P P  A      CCWP        V ++  G G T
Sbjct: 157 VDFRELDGKVDAAVKKTLDSQGFSTPTPIQA------CCWPVLLQNKDVVGIAETGSGKT 210


>sp|Q3HXY8|NGFV2_PSETE Venom nerve growth factor 2 OS=Pseudonaja
           textilis PE=2 SV=1
          Length = 243

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 337 NKGPSSQCSSFAVWIHGKTLKS*DIQ*FPVHGLGPQNSSHCIYK 206
           N+G  S C S +VW+  KT K+ DI+  PV  +   N ++ +YK
Sbjct: 132 NRGEYSVCDSISVWVANKT-KAMDIKGKPVTVMVDVNLNNHVYK 174


>sp|Q3HXY9|NGFV1_PSETE Venom nerve growth factor 1 OS=Pseudonaja
           textilis PE=2 SV=1
          Length = 243

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 337 NKGPSSQCSSFAVWIHGKTLKS*DIQ*FPVHGLGPQNSSHCIYK 206
           N+G  S C S +VW+  KT K+ DI+  PV  +   N ++ +YK
Sbjct: 132 NRGEYSVCDSISVWVANKT-KAMDIKGKPVTVMVDVNLNNHVYK 174


>sp|P64594|YHAV_ECOLI Uncharacterized protein yhaV OS=Escherichia
           coli (strain K12) GN=yhaV PE=4 SV=1
          Length = 154

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 28  SGWFVYRYLLFKESRKELAVEIEELKGK 111
           +GW +Y +  F+E+   L  E+E LKGK
Sbjct: 8   NGWALYAHPCFQETYDALVAEVETLKGK 35


>sp|P64595|YHAV_ECO57 Uncharacterized protein yhaV OS=Escherichia
           coli O157:H7 GN=yhaV PE=4 SV=1
          Length = 154

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 28  SGWFVYRYLLFKESRKELAVEIEELKGK 111
           +GW +Y +  F+E+   L  E+E LKGK
Sbjct: 8   NGWALYAHPCFQETYDALVAEVETLKGK 35


>sp|Q5YF90|NGFV1_NAJSP Venom nerve growth factor 1 OS=Naja sputatrix
           PE=1 SV=1
          Length = 243

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 337 NKGPSSQCSSFAVWIHGKTLKS*DIQ*FPVHGLGPQNSSHCIYK 206
           N+G  S C S +VW+  KT  + DI+  PV  +   N ++ +YK
Sbjct: 132 NRGEYSVCDSISVWVANKTTAT-DIKGKPVTVMVDVNLNNHVYK 174


>sp|A0RYF4|TFE_CENSY Transcription factor E OS=Cenarchaeum symbiosum
           GN=tfe PE=3 SV=1
          Length = 171

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 31  GWFVYRYLLFKESRKELAVEIEELKGKITGAVKE*LE 141
           GWFVYR+   +  R+E+   IE  K KI G +++ L+
Sbjct: 74  GWFVYRW---RSRREEVESFIENQKKKIMGRLQQRLD 107
tr_hit_id A9TE40
Definition tr|A9TE40|A9TE40_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 44
Score (bit) 76.6
E-value 6.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944387|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_O06, 5'
         (339 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TE40|A9TE40_PHYPA Predicted protein OS=Physcomitrella paten...    77   6e-13
tr|A9S558|A9S558_PHYPA Predicted protein (Fragment) OS=Physcomit...    74   5e-12
tr|A9NP27|A9NP27_PICSI Putative uncharacterized protein OS=Picea...    72   2e-11
tr|Q5Z6P4|Q5Z6P4_ORYSJ Os06g0264800 protein OS=Oryza sativa subs...    71   2e-11
tr|B6TCN7|B6TCN7_MAIZE Threonine endopeptidase OS=Zea mays PE=2 ...    71   2e-11
tr|A2YBH2|A2YBH2_ORYSI Putative uncharacterized protein OS=Oryza...    71   2e-11
tr|B4FR11|B4FR11_MAIZE Putative uncharacterized protein OS=Zea m...    70   7e-11
tr|A9PH76|A9PH76_POPTR Putative uncharacterized protein OS=Popul...    70   7e-11
tr|A5AEL3|A5AEL3_VITVI Putative uncharacterized protein OS=Vitis...    69   9e-11
tr|B4FTJ9|B4FTJ9_MAIZE Putative uncharacterized protein OS=Zea m...    68   3e-10
tr|B7FGQ4|B7FGQ4_MEDTR Putative uncharacterized protein OS=Medic...    67   3e-10
tr|A7PZR1|A7PZR1_VITVI Chromosome chr15 scaffold_40, whole genom...    67   3e-10
tr|Q6Z2L1|Q6Z2L1_ORYSJ Putative uncharacterized protein P0643A10...    66   1e-09
tr|Q0DXV3|Q0DXV3_ORYSJ Os02g0731600 protein (Fragment) OS=Oryza ...    66   1e-09
tr|B4YYA4|B4YYA4_THEHA ST6-40 OS=Thellungiella halophila PE=2 SV=1     66   1e-09
tr|A3AB17|A3AB17_ORYSJ Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|A2X996|A2X996_ORYSI Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|Q6ZKB9|Q6ZKB9_ORYSJ Os08g0430600 protein OS=Oryza sativa subs...    65   2e-09
tr|A2YVG4|A2YVG4_ORYSI Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|A9NNZ7|A9NNZ7_PICSI Putative uncharacterized protein OS=Picea...    64   5e-09
tr|B6TQX5|B6TQX5_MAIZE Threonine endopeptidase OS=Zea mays PE=4 ...    63   8e-09
tr|B6SNJ7|B6SNJ7_MAIZE Threonine endopeptidase OS=Zea mays PE=2 ...    63   8e-09
tr|B7KE46|B7KE46_9CHRO Putative uncharacterized protein OS=Cyano...    60   7e-08
tr|A9NN45|A9NN45_PICSI Putative uncharacterized protein OS=Picea...    58   2e-07
tr|A8JG55|A8JG55_CHLRE Predicted protein (Fragment) OS=Chlamydom...    58   2e-07
tr|A9RLB4|A9RLB4_PHYPA Predicted protein OS=Physcomitrella paten...    57   4e-07
tr|A4S1N1|A4S1N1_OSTLU Predicted protein OS=Ostreococcus lucimar...    57   4e-07
tr|Q69QC1|Q69QC1_ORYSJ Os06g0217700 protein OS=Oryza sativa subs...    57   6e-07
tr|A3B9P2|A3B9P2_ORYSJ Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|A2YAQ5|A2YAQ5_ORYSI Putative uncharacterized protein OS=Oryza...    57   6e-07

>tr|A9TE40|A9TE40_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_144170 PE=4 SV=1
          Length = 125

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITGAVKE 132
           V+EL+GLGY+GWFVYRYLLFK SRKEL  +IEELKGKITGA  E
Sbjct: 78  VMELIGLGYTGWFVYRYLLFKSSRKELVDDIEELKGKITGAANE 121


>tr|A9S558|A9S558_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_49116 PE=4 SV=1
          Length = 104

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 33/40 (82%), Positives = 37/40 (92%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITG 120
           V+EL+GLGY+GWFVYRYLLFK SRKEL  +IEELKGKITG
Sbjct: 65  VMELIGLGYTGWFVYRYLLFKSSRKELVEDIEELKGKITG 104


>tr|A9NP27|A9NP27_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 171

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 31/41 (75%), Positives = 38/41 (92%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITGA 123
           ++EL+GLGY+GWFVYRYLLFK SRKELA ++EELK KITG+
Sbjct: 126 LMELIGLGYTGWFVYRYLLFKSSRKELATDVEELKKKITGS 166


>tr|Q5Z6P4|Q5Z6P4_ORYSJ Os06g0264800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1001_B06.10 PE=2 SV=1
          Length = 156

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 33/40 (82%), Positives = 36/40 (90%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITG 120
           +LELVGLGY+GWFVYRYLLFKESRKELA +IE LK KI G
Sbjct: 115 ILELVGLGYTGWFVYRYLLFKESRKELATDIETLKKKIAG 154


>tr|B6TCN7|B6TCN7_MAIZE Threonine endopeptidase OS=Zea mays PE=2
           SV=1
          Length = 148

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 33/40 (82%), Positives = 36/40 (90%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITG 120
           +LELVGLGY+GWFVYRYLLFKESRKELA +IE LK KI G
Sbjct: 107 ILELVGLGYTGWFVYRYLLFKESRKELAADIETLKKKIAG 146


>tr|A2YBH2|A2YBH2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22457 PE=4 SV=1
          Length = 156

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 33/40 (82%), Positives = 36/40 (90%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITG 120
           +LELVGLGY+GWFVYRYLLFKESRKELA +IE LK KI G
Sbjct: 115 ILELVGLGYTGWFVYRYLLFKESRKELATDIETLKKKIAG 154


>tr|B4FR11|B4FR11_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 157

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITG 120
           ++ELVGLGY+GWFVYRYLLFKESRKELA +IE LK KI G
Sbjct: 116 IMELVGLGYTGWFVYRYLLFKESRKELADDIESLKKKIAG 155


>tr|A9PH76|A9PH76_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 164

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITG 120
           +LELVGLGY+GWFVYRYLLFK SRKELA +IE LK KI G
Sbjct: 123 ILELVGLGYTGWFVYRYLLFKSSRKELATDIESLKKKIAG 162


>tr|A5AEL3|A5AEL3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035039 PE=4 SV=1
          Length = 161

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 31/41 (75%), Positives = 37/41 (90%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITGA 123
           ++ELVGLGY+GWFVYRYLLFK SRKELA +IE LK KI+G+
Sbjct: 120 IMELVGLGYTGWFVYRYLLFKSSRKELATDIEALKKKISGS 160


>tr|B4FTJ9|B4FTJ9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 150

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +1

Query: 1   VLELVGLGYSGWFVYRYLLFKESRKELAVEIEELKGKITGAVK 129
           +LELVGLGY+GWFVYRYLLFK+SRKEL  +IE LK KI G  +
Sbjct: 108 ILELVGLGYTGWFVYRYLLFKQSRKELVDDIETLKKKIAGTAE 150