DK944392 |
Clone id |
YMU02A01NGRL0005_O12 |
Library |
YMU02 |
Length |
777 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_O12. 5' end sequence. |
Accession |
DK944392 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL375Contig1 |
Sequence |
GAAAACGGATAGATCGCAGAAGAGAGGTCCATGGCCATGGCAGCGACAGTGTCGCGTCCG GCATCTTTTGTAGTGACTGTTCCTCTTCCTAAGATGAGTACTTGTTTCAAAGGCCTCTCT CTGCAAGTGCAGCAACGCCCCGCCATCTCTGGGCCTCTCTCCACCTCCTCGCAGGGTTCT CAACTTCCCATCGTGTCCCAACAAAAGCACTACAAGGCGAAGACGCACCAGGCTTCCGCC AAGCGATTCAGGGTTACTGGCAGTGGAAAGATTATGTGTAGAAGAGCAGGAAAACAGCAT TTGTTGTGGAAGAAGAACACCAAGAGAAGGAAGCGTCTGTCAAAGATGGCCCTTGTAGAG AAGTGTGATTATCAAAACGTCACTCGTGCTCTTCCCTATTTGAAAGTTTCAAAATCATGA GTCTTCTACGGCAAGGCCGCTTCACCCAAGAAGAGTGAGTGATTCCCTATGAGCTTCTTA GAGAGAGTGGATGCCTCATTGGGGATAAGATTGTAACTTCTGTATCGCACATGAATTTCC CTCTTGCCACAATGTGTAATACTTTTGGAGCTTGGGCTGCAGGCCTCCTTAAGACTTATA AAGCCAATTTCTTCTCCCCTGGTGCAAAGGCTACTTTGTTTGCTCCTTCCTGGGGTATAG CCAAAAATCTTTTGCGTGTGGTTCCGGTCAGGTTTGTAATGAAGGGTGGTTGTAAAAATT CCTTTTTGAAAAAGGTAAAAAGACCGGGGGGTTTCCAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P23326 |
Definition |
sp|P23326|RK35_SPIOL 50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea |
Align length |
96 |
Score (bit) |
102.0 |
E-value |
2.0e-21 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q84K87 |
Definition |
tr|Q84K87|Q84K87_MAIZE 50S ribosomal protein L35 OS=Zea mays |
Align length |
140 |
Score (bit) |
111.0 |
E-value |
6.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944392|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_O12, 5' (756 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q84K87|Q84K87_MAIZE 50S ribosomal protein L35 OS=Zea mays GN=... 111 6e-23 tr|A9NKM1|A9NKM1_PICSI 50S ribosomal protein L35 OS=Picea sitche... 111 6e-23 tr|B6TBA3|B6TBA3_MAIZE 50S ribosomal protein L35 OS=Zea mays PE=... 110 8e-23 tr|Q67W51|Q67W51_ORYSJ 50S ribosomal protein L35 OS=Oryza sativa... 110 1e-22 tr|A2YFL7|A2YFL7_ORYSI 50S ribosomal protein L35 OS=Oryza sativa... 110 1e-22 tr|A5BPA4|A5BPA4_VITVI 50S ribosomal protein L35 OS=Vitis vinife... 109 2e-22 tr|A7QZA8|A7QZA8_VITVI 50S ribosomal protein L35 OS=Vitis vinife... 107 7e-22 tr|Q84VR0|Q84VR0_MAIZE 50S ribosomal protein L35 (Fragment) OS=Z... 106 1e-21 tr|Q84VR3|Q84VR3_MAIZE 50S ribosomal protein L35 (Fragment) OS=Z... 104 6e-21 tr|B7FGY3|B7FGY3_MEDTR Putative uncharacterized protein OS=Medic... 104 7e-21 tr|Q84VR2|Q84VR2_MAIZE 50S ribosomal protein L35 (Fragment) OS=Z... 102 3e-20 tr|A9PBS9|A9PBS9_POPTR 50S ribosomal protein L35 OS=Populus tric... 102 3e-20 tr|Q84VR4|Q84VR4_MAIZE 50S ribosomal protein L35 (Fragment) OS=Z... 101 5e-20 tr|Q9LWB6|Q9LWB6_ARATH 50S ribosomal protein L35 OS=Arabidopsis ... 100 1e-19 tr|Q8VZ55|Q8VZ55_ARATH 50S ribosomal protein L35 OS=Arabidopsis ... 100 1e-19 tr|A9TWE0|A9TWE0_PHYPA 50S ribosomal protein L35 OS=Physcomitrel... 85 5e-15 tr|A9TUC8|A9TUC8_PHYPA 50S ribosomal protein L35 (Fragment) OS=P... 85 5e-15 tr|O82237|O82237_ARATH 50S ribosomal protein L35 OS=Arabidopsis ... 77 1e-12 tr|B4VNM3|B4VNM3_9CYAN Ribosomal protein L35 OS=Microcoleus chth... 68 8e-10 tr|A3YWL8|A3YWL8_9SYNE 50S ribosomal protein L35 OS=Synechococcu... 67 1e-09 tr|A1HTD0|A1HTD0_9FIRM 50S ribosomal protein L35 OS=Thermosinus ... 67 1e-09 tr|Q7XYL4|Q7XYL4_BIGNA 50S ribosomal protein L35 (Fragment) OS=B... 67 1e-09 tr|B2J0D1|B2J0D1_NOSP7 Ribosomal protein L35 OS=Nostoc punctifor... 67 2e-09 tr|B5YLD0|B5YLD0_THEYD Ribosomal protein L35 OS=Thermodesulfovib... 66 2e-09 tr|B5W9E8|B5W9E8_SPIMA Ribosomal protein L35 OS=Arthrospira maxi... 66 3e-09 tr|B8HPI6|B8HPI6_9CHRO Ribosomal protein L35 OS=Cyanothece sp. P... 65 4e-09 tr|B1X4K4|B1X4K4_PAUCH 50S ribosomal protein L35 OS=Paulinella c... 65 4e-09 tr|A0ZI58|A0ZI58_NODSP 50S ribosomal protein L35 OS=Nodularia sp... 65 5e-09 tr|B2ULJ0|B2ULJ0_AKKM8 Ribosomal protein L35 OS=Akkermansia muci... 65 6e-09 tr|B5IJD2|B5IJD2_9CHRO Ribosomal protein L35 OS=Cyanobium sp. PC... 65 6e-09
>tr|Q84K87|Q84K87_MAIZE 50S ribosomal protein L35 OS=Zea mays GN=prpl35-1 PE=2 SV=1 Length = 143
Score = 111 bits (277), Expect = 6e-23 Identities = 68/140 (48%), Positives = 86/140 (61%), Gaps = 12/140 (8%) Frame = +1
Query: 31 MAMAATVSRPASFVVTV-----PLPKMSTCFKGLSL----QVQQRPAISGPLS---TSSQ 174 MA++ +++RPA V+ LP S F S +++ PL +S Sbjct: 1 MALSLSLARPAPLAVSAGAGARKLPAASLAFPAKSFFGAPLAATAASVASPLPRKPATST 60
Query: 175 GSQLPIVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMAL 354 S + + +K YK KTH+ASAKRFRVTG GKI+ R AGKQHLL KKNTKR+KRLSKM Sbjct: 61 TSLEVVAAGKKGYKMKTHKASAKRFRVTGRGKIVRRCAGKQHLLAKKNTKRKKRLSKMVQ 120
Query: 355 VEKCDYQNVTRALPYLKVSK 414 V K DY NVT ALPYLKV++ Sbjct: 121 VNKSDYDNVTGALPYLKVNR 140
>tr|A9NKM1|A9NKM1_PICSI 50S ribosomal protein L35 OS=Picea sitchensis PE=2 SV=1 Length = 153
Score = 111 bits (277), Expect = 6e-23 Identities = 70/141 (49%), Positives = 82/141 (58%), Gaps = 13/141 (9%) Frame = +1
Query: 31 MAMAATVSRPASFVVTVPLPKMSTCFKGLSLQVQQRPAISGPLSTSSQGSQLPI------ 192 +A V RP + + LP S FKGLSL + + + S G Q I Sbjct: 13 LAHVFPVKRPLN---STTLPLSSLSFKGLSLNLSSNGSRATGFSQWVLGRQSAIHPRRQG 69
Query: 193 -------VSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMA 351 V K YK KTH+ASAKRFRVTG GKI+ RRAGKQHLL KKNTKR+ RLSKM Sbjct: 70 SGFETVTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLVKKNTKRKNRLSKMT 129
Query: 352 LVEKCDYQNVTRALPYLKVSK 414 V+K DY NV ALPYLKV++ Sbjct: 130 YVDKSDYANVIGALPYLKVNR 150
>tr|B6TBA3|B6TBA3_MAIZE 50S ribosomal protein L35 OS=Zea mays PE=2 SV=1 Length = 143
Score = 110 bits (276), Expect = 8e-23 Identities = 68/140 (48%), Positives = 86/140 (61%), Gaps = 12/140 (8%) Frame = +1
Query: 31 MAMAATVSRPASFVVTV-----PLPKMSTCFKGLSL----QVQQRPAISGPLS---TSSQ 174 MA++ +++RPA V+ LP S F S +++ PL +S Sbjct: 1 MALSLSLARPAPLAVSAGAGARKLPAASLAFPAKSFFGAPLAATAASVASPLPRKPATST 60
Query: 175 GSQLPIVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMAL 354 S +V+ + YK KTH+ASAKRFRVTG GKI+ R AGKQHLL KKNTKR+KRLSKM Sbjct: 61 TSLEVVVAGKNGYKMKTHKASAKRFRVTGRGKIVRRCAGKQHLLAKKNTKRKKRLSKMVQ 120
Query: 355 VEKCDYQNVTRALPYLKVSK 414 V K DY NVT ALPYLKV++ Sbjct: 121 VNKSDYDNVTGALPYLKVNR 140
>tr|Q67W51|Q67W51_ORYSJ 50S ribosomal protein L35 OS=Oryza sativa subsp. japonica GN=OJ1226_A12.25 PE=2 SV=1 Length = 146
Score = 110 bits (275), Expect = 1e-22 Identities = 56/76 (73%), Positives = 63/76 (82%) Frame = +1
Query: 190 IVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMALVEKCD 369 +V+ K YK KTH+ASAKRFRVTG GKI+ RRAGKQHLL KKNTKRRKRLSKM V K D Sbjct: 69 VVAAGKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLSKKNTKRRKRLSKMIQVNKSD 128
Query: 370 YQNVTRALPYLKVSKS 417 Y NVT ALPYLKV+++ Sbjct: 129 YNNVTGALPYLKVNRN 144
>tr|A2YFL7|A2YFL7_ORYSI 50S ribosomal protein L35 OS=Oryza sativa subsp. indica GN=OsI_23900 PE=3 SV=1 Length = 146
Score = 110 bits (275), Expect = 1e-22 Identities = 56/76 (73%), Positives = 63/76 (82%) Frame = +1
Query: 190 IVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMALVEKCD 369 +V+ K YK KTH+ASAKRFRVTG GKI+ RRAGKQHLL KKNTKRRKRLSKM V K D Sbjct: 69 VVAAGKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLSKKNTKRRKRLSKMIQVNKSD 128
Query: 370 YQNVTRALPYLKVSKS 417 Y NVT ALPYLKV+++ Sbjct: 129 YNNVTGALPYLKVNRN 144
>tr|A5BPA4|A5BPA4_VITVI 50S ribosomal protein L35 OS=Vitis vinifera GN=GSVIVT00009281001 PE=3 SV=1 Length = 153
Score = 109 bits (272), Expect = 2e-22 Identities = 71/141 (50%), Positives = 87/141 (61%), Gaps = 12/141 (8%) Frame = +1
Query: 28 SMAMAATVSRPASFVVTVPLPKMSTCFKGLSLQVQQRPAISG-----PLSTS-------S 171 S+ + ++ S P+S V + + S + SL++ ISG PL S S Sbjct: 11 SLRLPSSFSSPSSVRVPNEVVQFSPFSRACSLKLSSSRNISGFAPILPLRHSTLNSPSPS 70
Query: 172 QGSQLPIVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMA 351 Q S L +VS K YK KTH+ASAKRFRVTG GKI+ RRAGKQHLL KKN KRR RLSKM Sbjct: 71 QPSSLTVVSA-KGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNAKRRLRLSKMH 129
Query: 352 LVEKCDYQNVTRALPYLKVSK 414 V + DY NV ALPYLKV++ Sbjct: 130 PVSRSDYDNVIGALPYLKVNR 150
>tr|A7QZA8|A7QZA8_VITVI 50S ribosomal protein L35 OS=Vitis vinifera GN=GSVIVT00010569001 PE=3 SV=1 Length = 153
Score = 107 bits (268), Expect = 7e-22 Identities = 70/140 (50%), Positives = 86/140 (61%), Gaps = 12/140 (8%) Frame = +1
Query: 31 MAMAATVSRPASFVVTVPLPKMSTCFKGLSLQVQQRPAISG-----PLSTS-------SQ 174 + + ++ S P+S V + + S + SL++ ISG PL S SQ Sbjct: 12 LRLPSSFSSPSSVRVPNEVVQFSPFSRACSLKLSSSRNISGFAPILPLRHSTLNSPSPSQ 71
Query: 175 GSQLPIVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMAL 354 S L +VS K YK KTH+ASAKRFRVTG GKI+ RRAGKQHLL KKN KRR RLSKM Sbjct: 72 PSSLTVVSA-KGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNAKRRLRLSKMHP 130
Query: 355 VEKCDYQNVTRALPYLKVSK 414 V + DY NV ALPYLKV++ Sbjct: 131 VSRSDYDNVIGALPYLKVNR 150
>tr|Q84VR0|Q84VR0_MAIZE 50S ribosomal protein L35 (Fragment) OS=Zea mays GN=prpl35-1 PE=2 SV=1 Length = 120
Score = 106 bits (265), Expect = 1e-21 Identities = 64/125 (51%), Positives = 83/125 (66%) Frame = +1
Query: 40 AATVSRPASFVVTVPLPKMSTCFKGLSLQVQQRPAISGPLSTSSQGSQLPIVSQQKHYKA 219 AA+++ PA PL + ++ + ++PA S +TS + + + +K YK Sbjct: 3 AASLAFPAKSFFGAPLAATAA---SVASPLPRKPATS---TTSLE----VVAAGKKGYKM 52
Query: 220 KTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMALVEKCDYQNVTRALPY 399 KTH+ASAKRFRVTG GKI+ R AGKQHLL KKNTKR+KRLSKM V K DY NVT ALPY Sbjct: 53 KTHKASAKRFRVTGRGKIVRRCAGKQHLLAKKNTKRKKRLSKMVQVNKSDYDNVTGALPY 112
Query: 400 LKVSK 414 LKV++ Sbjct: 113 LKVNR 117
>tr|Q84VR3|Q84VR3_MAIZE 50S ribosomal protein L35 (Fragment) OS=Zea mays GN=prpl35-1 PE=3 SV=1 Length = 76
Score = 104 bits (260), Expect = 6e-21 Identities = 53/71 (74%), Positives = 59/71 (83%) Frame = +1
Query: 202 QKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMALVEKCDYQNV 381 +K YK KTH+ASAKRFRVTG GKI+ R AGKQHLL KKNTKR+KRLSKM V K DY NV Sbjct: 3 KKGYKMKTHKASAKRFRVTGRGKIVRRCAGKQHLLAKKNTKRKKRLSKMVQVNKSDYDNV 62
Query: 382 TRALPYLKVSK 414 T ALPYLKV++ Sbjct: 63 TGALPYLKVNR 73
>tr|B7FGY3|B7FGY3_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 148
Score = 104 bits (259), Expect = 7e-21 Identities = 69/146 (47%), Positives = 87/146 (59%), Gaps = 18/146 (12%) Frame = +1
Query: 31 MAMA---ATVSRPASFVVTVPLPKMSTCFKGL---------SLQVQQRPAISGPLSTSSQ 174 MA+A ATVS A+ ++ P F + SL++ +IS P+ + Sbjct: 1 MALASATATVSSFAALRLSPPSTSTRVSFSSVKSPFSNNVNSLKLNWSCSISAPILNQNH 60
Query: 175 G------SQLPIVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKR 336 L IVS K YK KTH+ASAKRFRVTG+GKI+ RRAGKQHLL+KKN KR+ R Sbjct: 61 SIVTTSPRSLTIVSA-KGYKMKTHKASAKRFRVTGAGKIVRRRAGKQHLLYKKNKKRKLR 119
Query: 337 LSKMALVEKCDYQNVTRALPYLKVSK 414 LSKM V + DY NV ALPYLKV++ Sbjct: 120 LSKMIQVNRSDYDNVIGALPYLKVNR 145
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