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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944394
Clone id YMU02A01NGRL0005_O14
Library
Length 574
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_O14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGCTTCTCTCTCTCTCGCTCG
CTCGCGGAGTGTGGACGGAGAGCTTCGGCTCTCTTCTTTCTGCTCCACCTCCGGAGCATA
TCCCCTTCCATTGCCGTATCAGTCTCAGCATGGAGAGGGATCTTGCTCTTGGGTGTTCCC
AAACTTTGAACACAGCGGTAGTGGGGGCATCTCACCTTCAGAATGCAAGTCGACAGGCTG
TTCCATCTCGGCTTCAGTGGAAGCAGAGTTCAATTGGAAATGTCTGTAATTTAGCTTTCC
AGAAGTCACGGTGGCTGATGCCCAGAGTAGGGAAGACGAGTCTCCGGCACTGTGTTGTGA
AATCGGACATGACAGCTAGTGCTGCTACAGCACCTGCTGCCCCACTGTTACTCGAAACAC
CAAGCGGGCAATTTCTAGCGGAGTTGTTGCAAAGTCATCCTTACCTTGTGTGTGCAGCAG
CAGAGCAGCAGCTCGAAACGTTAGCGGAGGCTAGAGACGCAGCAGCCACAAGTCAAGAGC
AATCGAGTCCCATGGGCACTGAGATGATTCTTTA
■■Homology search results ■■ -
sp_hit_id Q12LE4
Definition sp|Q12LE4|TRPD_SHEDO Anthranilate phosphoribosyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Align length 52
Score (bit) 35.4
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944394|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_O14, 5'
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12LE4|TRPD_SHEDO Anthranilate phosphoribosyltransferase OS=S...    35   0.17 
sp|Q084N6|TRPD_SHEFN Anthranilate phosphoribosyltransferase OS=S...    34   0.50 
sp|Q9Z287|KR121_MOUSE Keratin-associated protein 12-1 OS=Mus mus...    33   0.67 
sp|Q04336|YM54_YEAST Uncharacterized protein YMR196W OS=Saccharo...    33   0.86 
sp|Q8TER5|SOLO_HUMAN Protein SOLO OS=Homo sapiens GN=SOLO PE=1 SV=2    32   1.9  
sp|Q8IUG1|KRA13_HUMAN Keratin-associated protein 1-3 OS=Homo sap...    32   1.9  
sp|Q6L8H2|KRA53_HUMAN Keratin-associated protein 5-3 OS=Homo sap...    32   2.5  
sp|Q863T4|TFF1_CANFA Trefoil factor 1 OS=Canis familiaris GN=TFF...    31   4.3  
sp|Q701N4|KRA52_HUMAN Keratin-associated protein 5-2 OS=Homo sap...    31   4.3  
sp|A5E0E7|RMD11_LODEL Protein RMD11 OS=Lodderomyces elongisporus...    30   5.6  
sp|P10667|MUA1_XENLA Integumentary mucin A.1 OS=Xenopus laevis P...    30   5.7  
sp|Q90623|MYPT1_CHICK Protein phosphatase 1 regulatory subunit 1...    30   7.3  
sp|Q924X6|LRP8_MOUSE Low-density lipoprotein receptor-related pr...    30   7.4  
sp|Q9BYS1|KRA15_HUMAN Keratin-associated protein 1-5 OS=Homo sap...    30   7.4  
sp|Q3KH00|QUIP_PSEPF Acyl-homoserine lactone acylase quiP OS=Pse...    30   9.5  
sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kinase CD...    30   9.5  
sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kinase CD...    30   9.5  
sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kinase CD...    30   9.5  
sp|O75690|KRA58_HUMAN Keratin-associated protein 5-8 OS=Homo sap...    30   9.7  

>sp|Q12LE4|TRPD_SHEDO Anthranilate phosphoribosyltransferase
           OS=Shewanella denitrificans (strain OS217 / ATCC
           BAA-1090 / DSM 15013) GN=trpD PE=3 SV=1
          Length = 361

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 89  HCRISLSMERDLALGCSQTLNTAVVGASHLQNASRQAVPSRLQWKQSSIGNV 244
           HC I L+M    A  C  TL  + + A H     R AVP R   K  +I N+
Sbjct: 147 HCGIGLTMSPKAASACLDTLGLSFLFAPHYHEGVRHAVPVRQALKTRTIFNI 198


>sp|Q084N6|TRPD_SHEFN Anthranilate phosphoribosyltransferase
           OS=Shewanella frigidimarina (strain NCIMB 400) GN=trpD
           PE=3 SV=1
          Length = 347

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 89  HCRISLSMERDLALGCSQTLNTAVVGASHLQNASRQAVPSRLQWKQSSIGNV 244
           HC I+L+M  D A  C   L    + A H     + AVP R   K  +I NV
Sbjct: 132 HCGIALTMAPDAASQCLDKLGLCFLFAPHYHGGVKHAVPVRQALKTRTIFNV 183


>sp|Q9Z287|KR121_MOUSE Keratin-associated protein 12-1 OS=Mus
           musculus GN=Krtap12-1 PE=2 SV=1
          Length = 130

 Score = 33.5 bits (75), Expect = 0.67
 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
 Frame = +1

Query: 154 SGSGGISPSECKSTGCSISASVEAEFNWKCL*FS--FPEVTVADAQSREDESPALCCEIG 327
           S S G  PS C S+ C  S  V +     C   S   P   V+ +       PA+C  + 
Sbjct: 5   SCSSGCQPSCCVSSSCQPSCCVSSPCQASCFVSSPCQPSCCVSSSCQSACCRPAICIPVR 64

Query: 328 HDS*CCYSTCCPTVTRNTKRAISSGVVAKSSLP-CVCSS 441
           +   CC    C           SS  V  S  P CV SS
Sbjct: 65  YQVACCVPVSCGPTVCMAPSCQSSVCVPVSCRPVCVTSS 103


>sp|Q04336|YM54_YEAST Uncharacterized protein YMR196W OS=Saccharomyces
            cerevisiae GN=YMR196W PE=1 SV=1
          Length = 1088

 Score = 33.1 bits (74), Expect = 0.86
 Identities = 14/45 (31%), Positives = 30/45 (66%)
 Frame = -3

Query: 154  CVQSLGTPKSKIPLHAETDTAMEGDMLRRWSRKKRAEALRPHSAS 20
            CV+   TP+S +   A T+++ +G  ++R +R+K A++L  ++A+
Sbjct: 947  CVRLPRTPRSSVATTASTESSEQGPKMKRMARRKSAKSLVNYTAT 991


>sp|Q8TER5|SOLO_HUMAN Protein SOLO OS=Homo sapiens GN=SOLO PE=1 SV=2
          Length = 1519

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 25/80 (31%), Positives = 30/80 (37%)
 Frame = +1

Query: 91  LPYQSQHGEGSCSWVFPNFEHSGSGGISPSECKSTGCSISASVEAEFNWKCL*FSFPEVT 270
           LP  S+H    C  V   +E SG     P E K+ G       E + +  C        T
Sbjct: 417 LPSPSEHKLPECHLVKEEYEGSGKPESEPKELKTAG-----EKEPQLSEAC------GPT 465

Query: 271 VADAQSREDESPALCCEIGH 330
              A  RE E P L C  GH
Sbjct: 466 EEGAGERELEGPGLLCMAGH 485


>sp|Q8IUG1|KRA13_HUMAN Keratin-associated protein 1-3 OS=Homo
           sapiens GN=KRTAP1-3 PE=2 SV=1
          Length = 177

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
 Frame = +1

Query: 136 FPNFEHSGSGGIS---PSECKSTGCSISASVEAEFNWKCL*FSF---PEVTVADAQSRED 297
           +P+   SG+ G S   PS C+++ C  S    +     C   SF   P  + +   S   
Sbjct: 11  YPSCSTSGTCGSSCCQPSCCETSCCQPSCCETSCCQPSCCQTSFCGFPSFSTSGTCSSSC 70

Query: 298 ESPALCCEIGHDS*CCYSTCCPTVTRNTKRAISSGV 405
             P+ CCE      CC  +CC T +  T   I  G+
Sbjct: 71  CQPS-CCETS----CCQPSCCQTSSCGTGCGIGGGI 101


>sp|Q6L8H2|KRA53_HUMAN Keratin-associated protein 5-3 OS=Homo
           sapiens GN=KRTAP5-3 PE=2 SV=1
          Length = 238

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 313 CCEIGHDS*CCYSTCC-PTVTRNT--KRAISSGVVAKSSLPCVCSS 441
           CC  G  S CC S+CC P+ ++++  K   S     K   PC CSS
Sbjct: 136 CCSSGCGSSCCQSSCCKPSCSQSSCCKPCCSQSSCCK---PCCCSS 178



 Score = 30.4 bits (67), Expect = 5.7
 Identities = 27/94 (28%), Positives = 32/94 (34%)
 Frame = +1

Query: 160 SGGISPSECKSTGCSISASVEAEFNWKCL*FSFPEVTVADAQSREDESPALCCEIGHDS* 339
           S G   S C+S+ C  S S  +     C              S+       CC  G  S 
Sbjct: 138 SSGCGSSCCQSSCCKPSCSQSSCCKPCC--------------SQSSCCKPCCCSSGCGSS 183

Query: 340 CCYSTCCPTVTRNTKRAISSGVVAKSSLPCVCSS 441
           CC S+CC       K   S     K   PC CSS
Sbjct: 184 CCQSSCC-------KPCCSQSSCCK---PCCCSS 207


>sp|Q863T4|TFF1_CANFA Trefoil factor 1 OS=Canis familiaris GN=TFF1
           PE=3 SV=1
          Length = 81

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 85  LPLPYQSQHGEGSCSWVFPNFEHSGSGGISPSECKSTGCSISASV 219
           L L   +Q  + +C+    + ++ GS GI+PS+CK  GC    +V
Sbjct: 15  LTLSSLAQGQQETCTVAPHHRDNCGSPGITPSQCKDKGCCFDNTV 59


>sp|Q701N4|KRA52_HUMAN Keratin-associated protein 5-2 OS=Homo
           sapiens GN=KRTAP5-2 PE=2 SV=1
          Length = 177

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +1

Query: 313 CCEIGHDS*CCYSTCCPTVTRNTKRAISSGVVAKSSLPCVCSS 441
           CC  G  S CC S+CC      +   +     +    PC C S
Sbjct: 123 CCSSGCGSSCCQSSCCKPCCCQSSCCVPVCCQSSCCKPCCCQS 165


>sp|A5E0E7|RMD11_LODEL Protein RMD11 OS=Lodderomyces elongisporus
           GN=RMD11 PE=3 SV=1
          Length = 828

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = -2

Query: 416 DFATTPLEIARLVFRVTVGQQVL*QH*LSCPISQHSAGDSSSLLWASATVTSGKLNYRHF 237
           +  + P ++    + VT+  ++     L  PI QH+ G  ++   +S    SG+ N  HF
Sbjct: 227 EILSPPRQMCNTRYEVTIQDKIF----LGLPIHQHADGTWTNAR-SSKRSQSGRSNSLHF 281

Query: 236 QLNSASTEAEM 204
           +  ++STEA++
Sbjct: 282 ENLTSSTEAQL 292
tr_hit_id Q7X9D6
Definition tr|Q7X9D6|Q7X9D6_MARQU ABRH7 (Fragment) OS=Marsilea quadrifolia
Align length 144
Score (bit) 57.0
E-value 6.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944394|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_O14, 5'
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7X9D6|Q7X9D6_MARQU ABRH7 (Fragment) OS=Marsilea quadrifolia ...    57   6e-07
tr|Q9LP80|Q9LP80_ARATH T1N15.6 (Putative uncharacterized protein...    39   0.22 
tr|Q2V4I1|Q2V4I1_ARATH Uncharacterized protein At1g48450.2 OS=Ar...    39   0.22 
tr|A7QTZ7|A7QTZ7_VITVI Chromosome undetermined scaffold_174, who...    35   2.4  
tr|Q9LVJ0|Q9LVJ0_ARATH Gb|AAF02142.1 (Putative uncharacterized p...    34   4.1  
tr|Q8W4L9|Q8W4L9_ARATH Putative uncharacterized protein At3g1780...    34   4.1  
tr|Q0WNF6|Q0WNF6_ARATH Putative uncharacterized protein At3g1780...    34   4.1  
tr|B8LPW2|B8LPW2_PICSI Putative uncharacterized protein OS=Picea...    34   5.4  
tr|B6KAM4|B6KAM4_TOXGO Putative uncharacterized protein OS=Toxop...    34   5.4  
tr|B0X3Z1|B0X3Z1_CULQU Papillote protein OS=Culex quinquefasciat...    33   9.2  
tr|B5VPW5|B5VPW5_YEAS6 YMR196Wp-like protein OS=Saccharomyces ce...    33   9.2  
tr|B3LM84|B3LM84_YEAS1 Putative uncharacterized protein OS=Sacch...    33   9.2  
tr|A6ZMQ8|A6ZMQ8_YEAS7 Conserved protein OS=Saccharomyces cerevi...    33   9.2  

>tr|Q7X9D6|Q7X9D6_MARQU ABRH7 (Fragment) OS=Marsilea quadrifolia
           PE=2 SV=1
          Length = 176

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 48/144 (33%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
 Frame = +2

Query: 110 MERDLALGCSQTLNTAVVGAS--HLQNASRQAVPSRLQWKQSSIG-NVCNLAFQKSRWLM 280
           ME  LA+   + LNTA VG+   H   A+RQAV S   W     G NV   +  +S    
Sbjct: 31  MESGLAIAGFKGLNTAAVGSVSWHSHGATRQAVGSS-SWPSRKQGLNVKGTSLDRSWHDA 89

Query: 281 PRVGKTSLRHCVVKSDMXXXXXXXXXXXXXXXXXXGQFLAELLQSHPYLVCXXXXXXXXX 460
             V         + ++M                  GQFL ELLQSHP+LV          
Sbjct: 90  STVSNRRKTRLTINAEMTASASTTPLAPLIPESPSGQFLTELLQSHPHLVPAAAEQQLET 149

Query: 461 XXXXRDAAATSQEQSSPMGTEMIL 532
               R+ AA+SQEQ +P G E++L
Sbjct: 150 LAEARE-AASSQEQPTPDGNELVL 172


>tr|Q9LP80|Q9LP80_ARATH T1N15.6 (Putative uncharacterized protein
           At1g48450) (At1g48450/T1N15_5) OS=Arabidopsis thaliana
           GN=At1g48450 PE=2 SV=1
          Length = 423

 Score = 38.5 bits (88), Expect = 0.22
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +2

Query: 386 GQFLAELLQSHPYLVCXXXXXXXXXXXXXRDAAATSQEQSSPMGTEMIL 532
           GQFL+++L SHP+LV              RDA   S++ SS +GT+++L
Sbjct: 93  GQFLSQILVSHPHLVPAAVEQQLEQLQIDRDAEEQSKDASSVLGTDIVL 141


>tr|Q2V4I1|Q2V4I1_ARATH Uncharacterized protein At1g48450.2
           OS=Arabidopsis thaliana GN=At1g48450 PE=4 SV=1
          Length = 342

 Score = 38.5 bits (88), Expect = 0.22
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +2

Query: 386 GQFLAELLQSHPYLVCXXXXXXXXXXXXXRDAAATSQEQSSPMGTEMIL 532
           GQFL+++L SHP+LV              RDA   S++ SS +GT+++L
Sbjct: 93  GQFLSQILVSHPHLVPAAVEQQLEQLQIDRDAEEQSKDASSVLGTDIVL 141


>tr|A7QTZ7|A7QTZ7_VITVI Chromosome undetermined scaffold_174, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00006608001 PE=4 SV=1
          Length = 362

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +2

Query: 386 GQFLAELLQSHPYLVCXXXXXXXXXXXXXRDAAATSQEQSSPMGTEMIL 532
           GQFL+++L SHP+LV              RD A   +E+SS  GTE++L
Sbjct: 36  GQFLSQILISHPHLVPAAVEQQLEQLQTDRD-AEEHKEESSASGTELVL 83


>tr|Q9LVJ0|Q9LVJ0_ARATH Gb|AAF02142.1 (Putative uncharacterized
           protein At3g17800) OS=Arabidopsis thaliana GN=At3g17800
           PE=2 SV=1
          Length = 421

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 386 GQFLAELLQSHPYLVCXXXXXXXXXXXXXRDAAATSQEQSSPMGTEMIL 532
           GQFL+++L SHP+LV              RD+   +++ +S  GT+++L
Sbjct: 102 GQFLSQILVSHPHLVPAAVEQQLEQLQTDRDSQGQNKDSASVPGTDIVL 150


>tr|Q8W4L9|Q8W4L9_ARATH Putative uncharacterized protein At3g17800;
           MEB5.2 (Putative uncharacterized protein At3g17800)
           OS=Arabidopsis thaliana GN=At3g17800/MEB5.2 PE=2 SV=1
          Length = 421

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 386 GQFLAELLQSHPYLVCXXXXXXXXXXXXXRDAAATSQEQSSPMGTEMIL 532
           GQFL+++L SHP+LV              RD+   +++ +S  GT+++L
Sbjct: 102 GQFLSQILVSHPHLVPAAVEQQLEQLQTDRDSQGQNKDSASVPGTDIVL 150


>tr|Q0WNF6|Q0WNF6_ARATH Putative uncharacterized protein At3g17800
           OS=Arabidopsis thaliana GN=At3g17800 PE=2 SV=1
          Length = 421

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 386 GQFLAELLQSHPYLVCXXXXXXXXXXXXXRDAAATSQEQSSPMGTEMIL 532
           GQFL+++L SHP+LV              RD+   +++ +S  GT+++L
Sbjct: 102 GQFLSQILVSHPHLVPAAVEQQLEQLQTDRDSQGQNKDSASVPGTDIVL 150


>tr|B8LPW2|B8LPW2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 434

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +2

Query: 386 GQFLAELLQSHPYLVCXXXXXXXXXXXXXRDAAATSQEQSSPMGTEMIL 532
           GQFL++LL+ HP+L+              RDAAA  Q+  S   TE++L
Sbjct: 104 GQFLSQLLKDHPHLLPAAVEQQLERLVADRDAAA-QQDPPSSTSTELVL 151


>tr|B6KAM4|B6KAM4_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_055300 PE=4 SV=1
          Length = 2413

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -2

Query: 335  LSCPISQHSAGDSSSLLWASATVTSGKLNYRHFQLNSASTEAEMEQPVDLHSEGEMPPL- 159
            L C ++QHSAG SSS  W           +R F      T  + E+ + + +  ++PPL 
Sbjct: 1920 LRCLLAQHSAGASSSWRW-----------WREF------TAEKEEENLAVSALSQLPPLF 1962

Query: 158  PLCSKFGNTQEQDPSPC*D 102
             L  + G  +E+ P+P  D
Sbjct: 1963 SLAERTGEAEEEAPAPSED 1981


>tr|B0X3Z1|B0X3Z1_CULQU Papillote protein OS=Culex quinquefasciatus
           GN=CpipJ_CPIJ014080 PE=4 SV=1
          Length = 554

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -2

Query: 332 SCPISQHSAGDSSSLLWASATVTSGKLNYRHFQLNSASTEAEMEQPVDLHSEGEMPPLPL 153
           S PIS H + D+S+ L  ++++ S   +Y H Q    +   EM    D+H   +  P PL
Sbjct: 61  SLPISSHGSYDNSAFLQDASSIYSD--HYGHTQEIRTTANCEMSPKFDIHVRVKRTPPPL 118

Query: 152 CS 147
            S
Sbjct: 119 PS 120