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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944404
Clone id YMU02A01NGRL0005_P05
Library
Length 597
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_P05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ATTCATCATCTCCATTTTTGTGGGCGATCGCCATCTTTCTGTGTATACTTTTCTCTACCC
CCGCCCCCTCCTCCTTGTACAGCACAGATTATCGGCCCTCATCATGGCTCTGCTGCAAGC
TGCCAACTCCATTTCCTGCACCCACAAGCTCTCCCTTCCCGTACAACGCCCCGCCCACAG
TAGGATTTGCTCTTCTCTCTCTACGCCCACCCTCAAGGGAGTGCCTCCTCCCTCTTTAAG
GTTCGGATCCTCTTTTTTCAATGGCTCCAGCCTGCTGAAGGTGAAGAGAGAGATACAAGA
GCTGAAGAGCGGCAGCAATTCGAGTAAGGGGGGAGCTTGCACAGCAACCAGTTCTATCAC
TCTCTCGGGCGAGTTGCTGCGATGGATCTTTGCCGGCGCAGCGGCGGTGCTTATGTACCT
CAAGAACACATCTATTAACAAGAATATTCTGGTTCCATTGTTGGCATTGCAAGCTCCACG
CGATGTTGTCACAGCGGTCCGGGGTGAATATGGACTTTGGGCGGCGTTTCTAGCTCTATT
GGTTAGGTTGTTTTACCAACTTCCAGGGGAGCTCGAGCTACCGCTTGTGCTTGTGTT
■■Homology search results ■■ -
sp_hit_id Q9LEM8
Definition sp|Q9LEM8|NAC2_CHLRE PsbD mRNA maturation factor Nac2, chloroplastic OS=Chlamydomonas reinhardtii
Align length 89
Score (bit) 33.5
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944404|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_P05, 5'
         (597 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LEM8|NAC2_CHLRE PsbD mRNA maturation factor Nac2, chloropla...    33   0.83 
sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain O...    30   2.7  
sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari GN=R...    32   3.2  
sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix lagot...    31   5.5  
sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys edw...    30   7.1  

>sp|Q9LEM8|NAC2_CHLRE PsbD mRNA maturation factor Nac2,
           chloroplastic OS=Chlamydomonas reinhardtii GN=NAC2 PE=1
           SV=1
          Length = 1385

 Score = 33.5 bits (75), Expect = 0.83
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = -3

Query: 262 IEKRGSEP*RGRRHSLEGGRRERRANPTVGGALYGKGELVG---AGNGVGSL--QQSHDE 98
           +E+ GSEP  G   S     +   A P+ G  +   GEL G       VG++  QQ H  
Sbjct: 334 LEQDGSEPLVGAAASPSSNGKRSAAGPSAGADVILVGELPGDVLLDESVGNVRRQQPHAN 393

Query: 97  GR*SVLYKEEGAGVEKSIHRKMAIAHKNG 11
           G  +      G+G   S   K+A AH NG
Sbjct: 394 GSGAKHNGVNGSGKSGSGGAKVAHAHVNG 422


>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain
            OS=Danio rerio GN=helz PE=2 SV=1
          Length = 1860

 Score = 29.6 bits (65), Expect(2) = 2.7
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 97   PHHGSAASCQLHFLHPQALPSRTTP 171
            PH  SAAS Q H   P  LPS+ TP
Sbjct: 1767 PHPASAASLQHHGQFPPLLPSKQTP 1791



 Score = 20.4 bits (41), Expect(2) = 2.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 171  PPTVGFALLSLRPPSRECLLP 233
            PPT+ +A     PP    +LP
Sbjct: 1808 PPTMSYASALRAPPKPRPMLP 1828


>sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari
           GN=Rnase1 PE=2 SV=1
          Length = 149

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 232 LFKVRILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 357
           LF + +L   W+QP+ G+E   +  ERQ  +  GS +++  Y
Sbjct: 9   LFPLFVLLLGWVQPSLGKESSAQKFERQHMDSSGSSNNSPTY 50


>sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix
           lagotricha GN=RNASE1 PE=3 SV=1
          Length = 156

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 247 ILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 357
           +L   W+QP+ G+E   +  +RQ  +  GSL SN  Y
Sbjct: 17  LLVLGWVQPSLGKESRAKKFQRQHMDSDGSLSSNPTY 53


>sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys
           edwardsi GN=RNASE1 PE=2 SV=1
          Length = 149

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 232 LFKVRILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 357
           LF + +L   W+QP+ G+E   +   RQ  +  GS +S+  Y
Sbjct: 9   LFSLLVLVLGWVQPSLGKESSAQKFNRQHMDTEGSSNSSPTY 50
tr_hit_id B8LQ60
Definition tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 85
Score (bit) 99.8
E-value 1.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944404|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_P05, 5'
         (597 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea...   100   1e-19
tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1 OS=Cr...    88   3e-16
tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein COR413...    87   7e-16
tr|B7ZY82|B7ZY82_MAIZE Putative uncharacterized protein OS=Zea m...    87   7e-16
tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gam...    87   7e-16
tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Or...    85   3e-15
tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subs...    84   5e-15
tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza...    84   6e-15
tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza...    82   2e-14
tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1 OS=Tr...    78   3e-13
tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gam...    78   4e-13
tr|Q9C7R2|Q9C7R2_ARATH Putative uncharacterized protein F15D2.29...    74   5e-12
tr|Q8RXM0|Q8RXM0_ARATH Putative uncharacterized protein At1g2939...    74   5e-12
tr|Q8L813|Q8L813_ARATH Putative uncharacterized protein At1g2939...    73   1e-11
tr|A7QQJ9|A7QQJ9_VITVI Chromosome undetermined scaffold_143, who...    73   1e-11
tr|Q94AL8|Q94AL8_ARATH Putative uncharacterized protein At1g2939...    72   2e-11
tr|A9RCW6|A9RCW6_PHYPA Predicted protein (Fragment) OS=Physcomit...    65   2e-09
tr|A9SZ92|A9SZ92_PHYPA Predicted protein OS=Physcomitrella paten...    56   2e-06
tr|Q93WS4|Q93WS4_PHYPA Cold acclimation protein WCOR413-like pro...    55   2e-06
tr|A9S4D3|A9S4D3_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-06
tr|A9RWC5|A9RWC5_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|A9X4J8|A9X4J8_9MAGN Cold acclimation protein COR413-PM1 OS=Ch...    50   8e-05
tr|A9S0S4|A9S0S4_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|B5TV68|B5TV68_CAMSI Cold acclimation protein WCOR413-like pro...    49   2e-04
tr|P93613|P93613_WHEAT Cold acclimation protein WCOR413 OS=Triti...    48   5e-04
tr|Q6PQ36|Q6PQ36_9CARY Putative stress-responsive protein OS=Tam...    47   0.001
tr|A9NT54|A9NT54_PICSI Putative uncharacterized protein OS=Picea...    47   0.001
tr|Q9XIM7|Q9XIM7_ARATH Similar to cold acclimation protein WCOR4...    46   0.001
tr|Q9FUW4|Q9FUW4_ORYSJ Os03g0767800 protein OS=Oryza sativa subs...    46   0.001
tr|Q93ZK5|Q93ZK5_WHEAT Cold acclimation protein WCOR413-like pro...    46   0.002

>tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 245

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 50/85 (58%), Positives = 62/85 (72%)
 Frame = +2

Query: 302 LKSGSNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPR 481
           + S + SS GGA +   S+ LS E LRW+F  AA VLM  K+T+INK+ LVPLLAL+AP 
Sbjct: 75  IHSIARSSYGGALSTECSVALSTEALRWLFGVAAVVLMLSKHTAINKSFLVPLLALEAPG 134

Query: 482 DVVTAVRGEYGLWAAFLALLVRLFY 556
           DV + +RG+YGLW AFL  LVRLFY
Sbjct: 135 DVFSWIRGDYGLWTAFLVFLVRLFY 159


>tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1
           OS=Cryptomeria japonica PE=2 SV=1
          Length = 241

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
 Frame = +2

Query: 305 KSGSNSSKGGACT---ATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQA 475
           K G    +GG  +   A   +  S E LRW+FA ++ VLM+ K+T I K+ LVPLLALQA
Sbjct: 69  KLGGRGKRGGTSSIQCARVDLLYSTEALRWLFAVSSVVLMFSKHTVIRKSFLVPLLALQA 128

Query: 476 PRDVVTAVRGEYGLWAAFLALLVRLFY 556
           P DVV+ +RG+YGLW AF   L+RLFY
Sbjct: 129 PGDVVSWIRGDYGLWTAFSIFLIRLFY 155


>tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein
           COR413-TM1 OS=Zea mays PE=2 SV=1
          Length = 177

 Score = 87.0 bits (214), Expect = 7e-16
 Identities = 41/78 (52%), Positives = 56/78 (71%)
 Frame = +2

Query: 323 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 502
           S+G A    SS  LS   ++WI AGA+AVL+  K T+I+K+ LVP  ALQAP  +++ ++
Sbjct: 68  SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 503 GEYGLWAAFLALLVRLFY 556
           G+YG W AFLALLVRLF+
Sbjct: 128 GDYGQWTAFLALLVRLFF 145


>tr|B7ZY82|B7ZY82_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 177

 Score = 87.0 bits (214), Expect = 7e-16
 Identities = 41/78 (52%), Positives = 56/78 (71%)
 Frame = +2

Query: 323 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 502
           S+G A    SS  LS   ++WI AGA+AVL+  K T+I+K+ LVP  ALQAP  +++ ++
Sbjct: 68  SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 503 GEYGLWAAFLALLVRLFY 556
           G+YG W AFLALLVRLF+
Sbjct: 128 GDYGQWTAFLALLVRLFF 145


>tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gamma
           form OS=Zea mays PE=2 SV=1
          Length = 226

 Score = 87.0 bits (214), Expect = 7e-16
 Identities = 41/78 (52%), Positives = 56/78 (71%)
 Frame = +2

Query: 323 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 502
           S+G A    SS  LS   ++WI AGA+AVL+  K T+I+K+ LVP  ALQAP  +++ ++
Sbjct: 68  SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 503 GEYGLWAAFLALLVRLFY 556
           G+YG W AFLALLVRLF+
Sbjct: 128 GDYGQWTAFLALLVRLFF 145


>tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Oryza
           sativa subsp. japonica PE=2 SV=1
          Length = 222

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 40/81 (49%), Positives = 56/81 (69%)
 Frame = +2

Query: 314 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 493
           ++  +GGA    SS  LS   ++W+ AGA AVL+  K T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPSSVIS 120

Query: 494 AVRGEYGLWAAFLALLVRLFY 556
            ++ +YG W AFLALLVRLF+
Sbjct: 121 WIKSDYGQWTAFLALLVRLFF 141


>tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1781_H11.9 PE=2 SV=1
          Length = 222

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 40/81 (49%), Positives = 56/81 (69%)
 Frame = +2

Query: 314 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 493
           ++  +GGA    SS  LS   ++W+ AGA AVL+  K T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 494 AVRGEYGLWAAFLALLVRLFY 556
            ++ +YG W AFLALLVRLF+
Sbjct: 121 WIKSDYGQWTAFLALLVRLFF 141


>tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21013 PE=4 SV=1
          Length = 222

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 40/81 (49%), Positives = 56/81 (69%)
 Frame = +2

Query: 314 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 493
           ++  +GGA    SS  LS   ++W+ AGA AVL+  K T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 494 AVRGEYGLWAAFLALLVRLFY 556
            ++ +YG W AFLALLVRLF+
Sbjct: 121 WIKSDYGHWTAFLALLVRLFF 141


>tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018786 PE=4 SV=1
          Length = 247

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 39/81 (48%), Positives = 55/81 (67%)
 Frame = +2

Query: 314 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 493
           ++  +GGA    SS  LS   ++W+ AGA AVL+  K T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 494 AVRGEYGLWAAFLALLVRLFY 556
            ++ +YG W A LALLVRLF+
Sbjct: 121 WIKSDYGQWTALLALLVRLFF 141


>tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1
           OS=Triticum aestivum PE=2 SV=1
          Length = 221

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 38/77 (49%), Positives = 50/77 (64%)
 Frame = +2

Query: 323 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 502
           S+G      +S  LS    +W+   AAAVL+  K T I+K+ LVPL  LQAP  V++ ++
Sbjct: 63  SRGSGIVCNASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 122

Query: 503 GEYGLWAAFLALLVRLF 553
            EYGLW AFLAL+VRLF
Sbjct: 123 SEYGLWTAFLALVVRLF 139