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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944412
Clone id YMU02A01NGRL0005_P14
Library
Length 630
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_P14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GGAGAATCGTTCTCCTAGTTGCAGCTGAGAGAGAGAGAGAGACAGAGTAGACAAGTGAAG
CAGGCTACATGACTATGGCAGATGTAGGGAAAGAGAACAGTCCTGGAGATCAGCACCACC
AAAACTTGAAACCTCCACCATTTGAGCATGCTGCCAAGCTGCGAGAGGTGCGGGATGCCC
GGTGCAAGCGCATCCTAGCTCGCAGCTCTGAAAGATTGGCATACATCACCGCATCAGCAG
GGGATCAGTCCAAATCCCCCCTTCTTGACAAAACCAACTCACCATCCCCCCTCTCCGTGG
ATGATGTCGCAAACGTCACCACTGCTGCTGCTGCGACGGATGCAGATATTTGCATATACC
TCTCAGATCATGAGACTATTGTCAGTGGATGCGATGCTACTGACGACAGCGAGCTGAAAA
AGTCATGTAATGAAGCTCTGCCAATTAAGCATGACACAAGCACTTCCACAATCTCGGAAA
GCCCCACAGTAGAAAATCATGCCACCATATGTCAAGCCATAGAAAATGTTGCTGCAGAGA
TTAAAGTGCGTAAATGGGTGAACATCAGAGAAAGCCCTGTCAACATCCTGAGCAAACTGA
ATTTCTGTATGCCATGCTCACATGTGCAGC
■■Homology search results ■■ -
sp_hit_id Q9Y228
Definition sp|Q9Y228|T3JAM_HUMAN TRAF3-interacting JNK-activating modulator OS=Homo sapiens
Align length 53
Score (bit) 33.9
E-value 0.71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944412|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_P14, 5'
         (630 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y228|T3JAM_HUMAN TRAF3-interacting JNK-activating modulator...    34   0.71 
sp|O14319|CUE5_SCHPO CUE domain-containing protein 5 OS=Schizosa...    32   3.5  
sp|Q92172|TEF_CHICK Transcription factor VBP OS=Gallus gallus GN...    31   4.6  
sp|Q8WX93|PALLD_HUMAN Palladin OS=Homo sapiens GN=PALLD PE=1 SV=2      31   4.6  

>sp|Q9Y228|T3JAM_HUMAN TRAF3-interacting JNK-activating modulator
           OS=Homo sapiens GN=TRAF3IP3 PE=1 SV=2
          Length = 551

 Score = 33.9 bits (76), Expect = 0.71
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +3

Query: 348 ICIYLSDHETIVSGCDATDDSELKKSCNEALPIKHDTSTSTISESPTVENHAT 506
           IC  LSDH +  +G     D+ +KK      P KH   T T +E PT++N A+
Sbjct: 134 ICRDLSDHLSSQAGGLPPQDTPIKK------PPKHHRGTQTKAEGPTIKNDAS 180


>sp|O14319|CUE5_SCHPO CUE domain-containing protein 5
           OS=Schizosaccharomyces pombe GN=SPBC16E9.02c PE=2 SV=1
          Length = 569

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +3

Query: 378 IVSGCDATDDSELKKSCNEALPIKHDTSTSTISESPTV------ENHATICQAIENVAAE 539
           + +   A DDS+L+ + NE L +K DTS  T S    V      E+     + +E V+ E
Sbjct: 293 VANSAFALDDSDLESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEE 352


>sp|Q92172|TEF_CHICK Transcription factor VBP OS=Gallus gallus
           GN=TEF PE=1 SV=2
          Length = 319

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +3

Query: 66  YMTMADVGKENS-PGDQHHQNLKPPPFEHAAKLREVRDARCKRILARSSERLA-YITASA 239
           YM + +   EN  P    H +L   P    AKL E   A        SS   A Y  + A
Sbjct: 105 YMDLDEFLLENGIPSSPTHLDLNQNPLMPVAKLEEKEPASASTGSPVSSSSTAVYQQSEA 164

Query: 240 GDQSKSPLLDKTNSPSPL 293
              ++SP  ++ N+PSP+
Sbjct: 165 ASSTESPPQNERNTPSPI 182


>sp|Q8WX93|PALLD_HUMAN Palladin OS=Homo sapiens GN=PALLD PE=1 SV=2
          Length = 1383

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 172 GMPGASAS*LAALKDWHTSPHQQGISPNPPFLTKPTHHPPSPWMMSQTSP 321
           G P +S S  +       +P Q G +P PPF       P +PW  S  SP
Sbjct: 750 GTPASSPSSSSLPSPMSPTPRQFGRAPVPPFAQPFGAEPEAPWGSSSPSP 799
tr_hit_id B6MFL5
Definition tr|B6MFL5|B6MFL5_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 51
Score (bit) 34.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944412|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_P14, 5'
         (630 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6MFL5|B6MFL5_BRAFL Putative uncharacterized protein OS=Branc...    34   6.4  
tr|A8WS58|A8WS58_CAEBR CBR-RTEL-1 protein OS=Caenorhabditis brig...    34   8.2  
tr|A8WLE8|A8WLE8_CAEBR Putative uncharacterized protein OS=Caeno...    34   8.2  
tr|B4DU99|B4DU99_HUMAN cDNA FLJ52976, highly similar to TRAF3-in...    34   8.2  
tr|B3KWQ9|B3KWQ9_HUMAN cDNA FLJ43613 fis, clone SPLEN2015679, hi...    34   8.2  
tr|A1L464|A1L464_HUMAN Putative uncharacterized protein OS=Homo ...    34   8.2  

>tr|B6MFL5|B6MFL5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_81821 PE=4 SV=1
          Length = 425

 Score = 34.3 bits (77), Expect = 6.4
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = +1

Query: 145 SMLPSCERCGMPGASAS*LAALKDWHTSPHQQGISPNPPFLTKPTHHPPSP 297
           S +PS      P   AS L       +SP    +SP P + T PTH PPSP
Sbjct: 97  SSIPSVSAASRPRQDASILYTKP---SSPRSGVVSPPPSYSTLPTHIPPSP 144


>tr|A8WS58|A8WS58_CAEBR CBR-RTEL-1 protein OS=Caenorhabditis
           briggsae GN=Cbr-rtel-1 PE=4 SV=1
          Length = 994

 Score = 33.9 bits (76), Expect = 8.2
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +3

Query: 417 KKSCNEALPIKHDTSTSTISESPTVENHATICQAIENVAAEIKVRKWVNIRESPVNILS 593
           KK   E  PIK+D+S+S++   PT E+             E+KV+KW    +S  N+ S
Sbjct: 821 KKEKIEPRPIKYDSSSSSVFSLPTNED-------------ELKVKKWEQENDSQTNVSS 866


>tr|A8WLE8|A8WLE8_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG24757 PE=4 SV=2
          Length = 616

 Score = 33.9 bits (76), Expect = 8.2
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +3

Query: 417 KKSCNEALPIKHDTSTSTISESPTVENHATICQAIENVAAEIKVRKWVNIRESPVNILS 593
           KK   E  PIK+D+S+S++   PT E+             E+KV+KW    +S  N+ S
Sbjct: 443 KKEKIEPRPIKYDSSSSSVFSLPTNED-------------ELKVKKWEQENDSQTNVSS 488


>tr|B4DU99|B4DU99_HUMAN cDNA FLJ52976, highly similar to
           TRAF3-interacting JNK-activating modulator OS=Homo
           sapiens PE=2 SV=1
          Length = 320

 Score = 33.9 bits (76), Expect = 8.2
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +3

Query: 348 ICIYLSDHETIVSGCDATDDSELKKSCNEALPIKHDTSTSTISESPTVENHAT 506
           IC  LSDH +  +G     D+ +KK      P KH   T T +E PT++N A+
Sbjct: 117 ICRDLSDHLSSQAGGLPPQDTPIKK------PPKHHRGTQTKAEGPTIKNDAS 163


>tr|B3KWQ9|B3KWQ9_HUMAN cDNA FLJ43613 fis, clone SPLEN2015679,
           highly similar to TRAF3-interacting JNK-activating
           modulator (Fragment) OS=Homo sapiens PE=2 SV=1
          Length = 551

 Score = 33.9 bits (76), Expect = 8.2
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +3

Query: 348 ICIYLSDHETIVSGCDATDDSELKKSCNEALPIKHDTSTSTISESPTVENHAT 506
           IC  LSDH +  +G     D+ +KK      P KH   T T +E PT++N A+
Sbjct: 134 ICRDLSDHLSSQAGGLPPQDTPIKK------PPKHHRGTQTKAEGPTIKNDAS 180


>tr|A1L464|A1L464_HUMAN Putative uncharacterized protein OS=Homo
           sapiens GN=TRAF3IP3 PE=2 SV=1
          Length = 551

 Score = 33.9 bits (76), Expect = 8.2
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +3

Query: 348 ICIYLSDHETIVSGCDATDDSELKKSCNEALPIKHDTSTSTISESPTVENHAT 506
           IC  LSDH +  +G     D+ +KK      P KH   T T +E PT++N A+
Sbjct: 134 ICRDLSDHLSSQAGGLPPQDTPIKK------PPKHHRGTQTKAEGPTIKNDAS 180