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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944416
Clone id YMU02A01NGRL0005_P24
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_P24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GACAAAAGACACTAAAAAAGCAGAGGTCTCTCTGGTGTAAAGGTGCATTGCAAGCTCCAC
GAACGGGTAGTTTTTCTGAAAGCCACGACGACTAATTCATTTGATCAACTTCTGAAAGTG
AGTAGCTGACCTGCAGCTTATTCCTGAAGAATGGCAAAGCCCAGAAAGTGAAAGCTGTGT
GGAAGTTGTAATTGTTGTAGAATATTATTCATTATGTAATTGCTCAGAGGTCATGATGTC
TATTATTTGGGGGCATAATGTAAACGAAGCAACCCCCCTTTCCCCCTCAACAGCTTAACT
GATGAGAATCTGCAATATGCCAGAATTGTAACTTCTCATTTGAAGAGTAGTTTGGATGGT
CCAAATTTCAATAATGTCATGGGCATATCCTTTCTTGCNNAANANAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CCCCAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5BD53
Definition sp|Q5BD53|YFAS1_EMENI FAS1 domain-containing protein AN1527 OS=Emericella nidulans
Align length 53
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944416|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_P24, 5'
         (384 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5BD53|YFAS1_EMENI FAS1 domain-containing protein AN1527 OS=E...    30   4.8  
sp|Q7VRB4|SYC_BLOFL Cysteinyl-tRNA synthetase OS=Blochmannia flo...    29   8.2  

>sp|Q5BD53|YFAS1_EMENI FAS1 domain-containing protein AN1527
           OS=Emericella nidulans GN=AN1527 PE=3 SV=1
          Length = 223

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
 Frame = -2

Query: 155 TFWALPFFR----------NKLQVSYSLSEVDQMN*SSWLSEKLPVRGACNAP 27
           T W+LP+F           NK +  ++ S  D      WLS + P+RGA  AP
Sbjct: 21  TAWSLPYFAYRKRIPEPLLNKPRSRHARSIEDLDGLKEWLSNQQPLRGAVMAP 73


>sp|Q7VRB4|SYC_BLOFL Cysteinyl-tRNA synthetase OS=Blochmannia
           floridanus GN=cysS PE=3 SV=1
          Length = 474

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 284 TDENLQYARIVTSHLKSSLDGPNFNNVM 367
           +D N++ AR+   HL S+L G NFN ++
Sbjct: 308 SDNNIKNARLSLKHLYSALHGINFNPIV 335
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944416|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_P24, 5'
         (384 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******