DK944418
Clone id YMU02A01NGRL0006_A02
Library
Length 160
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_A02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TGCTATTGTCTAGGTTTCTTCAAACTTGGGTTTTAGACAGGCGGTGGCAGGATTTGTAGG
TTGGTCTTATGGATTTCTATATGTACGGGTTTGTATTTTGGATTATCAATGAGGCTTTTT
TCTTGTTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q4QXJ7
Definition sp|Q4QXJ7|POLS_EEEVF Structural polyprotein OS=Eastern equine encephalitis virus (strain Florida 91-469)
Align length 24
Score (bit) 29.6
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944418|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_A02, 5'
(116 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4QXJ7|POLS_EEEVF Structural polyprotein OS=Eastern equine en... 30 4.9
sp|P08768|POLS_EEEV Structural polyprotein OS=Eastern equine enc... 30 4.9
sp|P27284|POLS_EEEV3 Structural polyprotein OS=Eastern equine en... 29 6.5

>sp|Q4QXJ7|POLS_EEEVF Structural polyprotein OS=Eastern equine
encephalitis virus (strain Florida 91-469) PE=3 SV=1
Length = 1242

Score = 29.6 bits (65), Expect = 4.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1

Query: 116 SLIDNPKYKPVHIEIHKTNLQILP 45
+L++ P Y PVH++I N +I+P
Sbjct: 818 ALVERPGYAPVHLQIQLVNTRIIP 841


>sp|P08768|POLS_EEEV Structural polyprotein OS=Eastern equine
encephalitis virus PE=2 SV=1
Length = 1239

Score = 29.6 bits (65), Expect = 4.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1

Query: 116 SLIDNPKYKPVHIEIHKTNLQILP 45
+L++ P Y PVH++I N +I+P
Sbjct: 815 ALVERPGYAPVHLQIQLVNTRIIP 838


>sp|P27284|POLS_EEEV3 Structural polyprotein OS=Eastern equine
encephalitis virus (strain va33[ten broeck]) PE=3 SV=1
Length = 1240

Score = 29.3 bits (64), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1

Query: 116 SLIDNPKYKPVHIEIHKTNLQILP 45
+L++ P Y PVH++I N I+P
Sbjct: 816 ALVERPGYAPVHLQIQLVNTSIIP 839


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944418|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_A02, 5'
(116 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******