DK944420 |
Clone id |
YMU02A01NGRL0006_A04 |
Library |
YMU02 |
Length |
730 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_A04. 5' end sequence. |
Accession |
DK944420 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1350Contig1 |
Sequence |
GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAGAGCGGACATGGCTAGCT GCATGTATATGCTAGGTGGTGCGGCAACTCCTTCCACATCTTTAACTTCGCCATTACAGG CAGGTCGCCTCTTCTCTTCTGGCCGCCCTCACCGTCTTCGCATCTCTTGCTCTGCCACCC AAGAGAAAGAAACCCCTCAGGAGACACCCGAAGAAGTCACACGCAAATTTGGATTAGAAG CCGGCCTTTGGAAGATTTTCACCTCTAAGGAAGAAAGTGATGAAGATGGTAAGAAACAGA AAGGTGCCCAAGCCAAGGAATTGCTTGCTCGATATGGTGGAGCGTACTTGGCGACGTCGA TATCATTATCAGCTGTGTCCTTTGGCCTTTGTTATGTATTGATAAGCTCGGGTGTTGATG TTTCAGGGCTGCTACAGAAGATTGGCATTCAGACAAATGAGGCTAGTGAGAAGGTGGGTA CGCTTGCATTGGCGTATGCTGCACACAAGGCAGCCTCGCCTATTCGATTTCCTCCTACAG TTGCCTTAACTCCTATTGTTGCTAGTTGGCTGGGGAAGAAGGTAACCGATGACAAAGAGG ACCTGGAAAAGTCATGAGATTGTCTGCCTAATTATACGGAAATTCCCCCTTTTGTAAAAA CATGTTGGTAATGGTAATAATGGGTTCCCCTTGTTTTAACCCCAAAAAAAAAAAAAAAAA AAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q96KR6 |
Definition |
sp|Q96KR6|CT108_HUMAN Transmembrane protein C20orf108 OS=Homo sapiens |
Align length |
103 |
Score (bit) |
52.8 |
E-value |
2.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9XIN6 |
Definition |
tr|Q9XIN6|Q9XIN6_ARATH Expressed protein (Putative uncharacterized protein At2g27290) (At2g27290) OS=Arabidopsis thaliana |
Align length |
131 |
Score (bit) |
163.0 |
E-value |
1.0e-38 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944420|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_A04, 5' (703 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9XIN6|Q9XIN6_ARATH Expressed protein (Putative uncharacteriz... 163 1e-38 tr|A7QF53|A7QF53_VITVI Chromosome undetermined scaffold_87, whol... 162 1e-38 tr|Q8LBI5|Q8LBI5_ARATH Putative uncharacterized protein OS=Arabi... 161 3e-38 tr|B6TEW4|B6TEW4_MAIZE Putative uncharacterized protein OS=Zea m... 160 1e-37 tr|A9RXA6|A9RXA6_PHYPA Predicted protein OS=Physcomitrella paten... 157 5e-37 tr|Q7XTF4|Q7XTF4_ORYSJ Os04g0416000 protein OS=Oryza sativa subs... 157 6e-37 tr|A2XTA4|A2XTA4_ORYSI Putative uncharacterized protein OS=Oryza... 157 6e-37 tr|Q01I48|Q01I48_ORYSA OSIGBa0092M08.4 protein OS=Oryza sativa G... 156 1e-36 tr|A9NKZ4|A9NKZ4_PICSI Putative uncharacterized protein OS=Picea... 156 1e-36 tr|A8IL11|A8IL11_CHLRE Predicted protein OS=Chlamydomonas reinha... 129 1e-28 tr|Q00VU7|Q00VU7_OSTTA Predicted membrane protein (ISS) OS=Ostre... 124 6e-27 tr|A4SB97|A4SB97_OSTLU Predicted protein (Fragment) OS=Ostreococ... 119 1e-25 tr|B7G4C6|B7G4C6_PHATR Predicted protein (Fragment) OS=Phaeodact... 115 4e-24 tr|B8BRH8|B8BRH8_THAPS Predicted protein OS=Thalassiosira pseudo... 114 8e-24 tr|B0XJP3|B0XJP3_CULQU Putative uncharacterized protein OS=Culex... 57 1e-06 tr|Q7Q4K1|Q7Q4K1_ANOGA AGAP008432-PA (Fragment) OS=Anopheles gam... 57 1e-06 tr|A7SLH1|A7SLH1_NEMVE Predicted protein OS=Nematostella vectens... 56 2e-06 tr|A1A4K7|A1A4K7_BOVIN Chromosome 20 open reading frame 108 orth... 55 4e-06 tr|A5GFW0|A5GFW0_PIG Orthologue of H. sapiens chromosome 20 open... 55 6e-06 tr|B7PVF2|B7PVF2_IXOSC Transmembrane protein C20orf108, putative... 54 7e-06 tr|Q5ZIS2|Q5ZIS2_CHICK Putative uncharacterized protein OS=Gallu... 53 2e-05 tr|B2RBQ9|B2RBQ9_HUMAN cDNA, FLJ95637 (Chromosome 20 open readin... 53 2e-05 tr|Q6DFH7|Q6DFH7_XENLA MGC83126 protein OS=Xenopus laevis GN=MGC... 52 4e-05 tr|Q0V9D0|Q0V9D0_XENTR Putative uncharacterized protein MGC14730... 51 6e-05 tr|B4QCM8|B4QCM8_DROSI GD10376 OS=Drosophila simulans GN=GD10376... 51 8e-05 tr|B4M8Z7|B4M8Z7_DROVI GJ18221 OS=Drosophila virilis GN=GJ18221 ... 51 8e-05 tr|A9SPH1|A9SPH1_PHYPA Predicted protein OS=Physcomitrella paten... 50 1e-04 tr|Q4SS83|Q4SS83_TETNG Chromosome 11 SCAF14479, whole genome sho... 50 2e-04 tr|B4MUM0|B4MUM0_DROWI GK15336 OS=Drosophila willistoni GN=GK153... 50 2e-04 tr|B2RYM8|B2RYM8_RAT Similar to RIKEN cDNA 2010011I20 (Similar t... 49 2e-04
>tr|Q9XIN6|Q9XIN6_ARATH Expressed protein (Putative uncharacterized protein At2g27290) (At2g27290) OS=Arabidopsis thaliana GN=At2g27290 PE=2 SV=1 Length = 201
Score = 163 bits (412), Expect = 1e-38 Identities = 81/131 (61%), Positives = 97/131 (74%), Gaps = 4/131 (3%) Frame = +3
Query: 222 RKFGLEAGLWKIFTSKEESDEDG----KKQKGAQAKELLARYGGAYLATSISLSAVSFGL 389 +K+GLE GLWKI +SK++ DG KK K +AKELLA+YGGAYLATSI+LS +SF L Sbjct: 69 KKYGLEVGLWKILSSKDDEGSDGDNKKKKSKTDEAKELLAKYGGAYLATSITLSLISFSL 128
Query: 390 CYVLISSGVDVSGLLQKIGIQTNEASEKVGTLXXXXXXXXXXSPIRFPPTVALTPIVASW 569 CYVL++SGVDV LL K+GI TNE EKVG SPIRFPPTVALTPIVA+W Sbjct: 129 CYVLVTSGVDVQALLLKVGISTNETGEKVGAFALAYAAHKAASPIRFPPTVALTPIVANW 188
Query: 570 LGKKVTDDKED 602 +GKKV +K+D Sbjct: 189 IGKKVDKEKDD 199
>tr|A7QF53|A7QF53_VITVI Chromosome undetermined scaffold_87, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037280001 PE=4 SV=1 Length = 196
Score = 162 bits (411), Expect = 1e-38 Identities = 85/128 (66%), Positives = 97/128 (75%), Gaps = 2/128 (1%) Frame = +3
Query: 225 KFGLEAGLWKIFTSKEESDEDGK--KQKGAQAKELLARYGGAYLATSISLSAVSFGLCYV 398 KFGLEAGLWKIF+SK+E E GK K KG +AKELLA+YGGAYLATSI+LS +SF LCY Sbjct: 71 KFGLEAGLWKIFSSKDEEKEGGKREKSKGEEAKELLAKYGGAYLATSITLSLISFSLCYA 130
Query: 399 LISSGVDVSGLLQKIGIQTNEASEKVGTLXXXXXXXXXXSPIRFPPTVALTPIVASWLGK 578 LI++GVDV LLQK+GI + EKVGT SPIRFPPTVALTPIVASW+GK Sbjct: 131 LINAGVDVQALLQKVGISVDATGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWIGK 190
Query: 579 KVTDDKED 602 V DKE+ Sbjct: 191 IV--DKEN 196
>tr|Q8LBI5|Q8LBI5_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 201
Score = 161 bits (408), Expect = 3e-38 Identities = 80/131 (61%), Positives = 96/131 (73%), Gaps = 4/131 (3%) Frame = +3
Query: 222 RKFGLEAGLWKIFTSKEESDEDG----KKQKGAQAKELLARYGGAYLATSISLSAVSFGL 389 +K+GLE GLWKI +SK++ DG KK K +AKELLA+YGGAYL TSI+LS +SF L Sbjct: 69 KKYGLEVGLWKILSSKDDEGSDGDNKKKKSKTDEAKELLAKYGGAYLVTSITLSLISFSL 128
Query: 390 CYVLISSGVDVSGLLQKIGIQTNEASEKVGTLXXXXXXXXXXSPIRFPPTVALTPIVASW 569 CYVL++SGVDV LL K+GI TNE EKVG SPIRFPPTVALTPIVA+W Sbjct: 129 CYVLVTSGVDVQALLLKVGISTNETGEKVGAFALAYAAHKAASPIRFPPTVALTPIVANW 188
Query: 570 LGKKVTDDKED 602 +GKKV +K+D Sbjct: 189 IGKKVDKEKDD 199
>tr|B6TEW4|B6TEW4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 192
Score = 160 bits (404), Expect = 1e-37 Identities = 94/186 (50%), Positives = 112/186 (60%), Gaps = 10/186 (5%) Frame = +3
Query: 51 MASCMYMLGGAATPSTS-------LTSPLQAGRLFSSGR--PHRLRISCSAXXXXXXXXX 203 MA+ +L A P+ + L LQ G L S P R R++ SA Sbjct: 1 MAATALLLPSLAAPTDTPRPAHRLLQPQLQRGSLVSRSLQPPRRRRLAVSAVQETKEGEA 60
Query: 204 XXXXXX-RKFGLEAGLWKIFTSKEESDEDGKKQKGAQAKELLARYGGAYLATSISLSAVS 380 K+GLE GLWK+F+SKEE +GKK + QAKELLA+YGGAYLATSISLS VS Sbjct: 61 KTADEITEKYGLEFGLWKVFSSKEEEGGEGKKSRTDQAKELLAKYGGAYLATSISLSIVS 120
Query: 381 FGLCYVLISSGVDVSGLLQKIGIQTNEASEKVGTLXXXXXXXXXXSPIRFPPTVALTPIV 560 F LCY+L+S+GVDV LL K+GI T E KVGT SPIRFPPTVALTP+V Sbjct: 121 FTLCYLLVSAGVDVQDLLAKVGIVTGETGGKVGTFALAYAAHKAASPIRFPPTVALTPVV 180
Query: 561 ASWLGK 578 ASW+GK Sbjct: 181 ASWIGK 186
>tr|A9RXA6|A9RXA6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_121071 PE=4 SV=1 Length = 168
Score = 157 bits (398), Expect = 5e-37 Identities = 77/126 (61%), Positives = 91/126 (72%) Frame = +3
Query: 222 RKFGLEAGLWKIFTSKEESDEDGKKQKGAQAKELLARYGGAYLATSISLSAVSFGLCYVL 401 +K+GLEAGLWKIF+SK++ + + K QAKELL RYGGAYL TSISLS VSF LCYVL Sbjct: 39 KKYGLEAGLWKIFSSKDKENSPEQGTKTNQAKELLKRYGGAYLVTSISLSIVSFSLCYVL 98
Query: 402 ISSGVDVSGLLQKIGIQTNEASEKVGTLXXXXXXXXXXSPIRFPPTVALTPIVASWLGKK 581 + +GVDV+ LL K+GI N+ EKVGT SP+RFPPTVALTPIVA W GKK Sbjct: 99 VQAGVDVTSLLDKVGIHANDTGEKVGTFALAYAAHKALSPVRFPPTVALTPIVAGWFGKK 158
Query: 582 VTDDKE 599 DD + Sbjct: 159 PEDDND 164
>tr|Q7XTF4|Q7XTF4_ORYSJ Os04g0416000 protein OS=Oryza sativa subsp. japonica GN=OJ991214_12.13 PE=2 SV=1 Length = 187
Score = 157 bits (397), Expect = 6e-37 Identities = 89/182 (48%), Positives = 112/182 (61%), Gaps = 6/182 (3%) Frame = +3
Query: 51 MASCMYMLGGAATPSTS----LTSPLQAGRLFSSGRPHRLRISCSAXXXXXXXXXXXXXX 218 MA+ +L A P+ L + RL +S RP R R+S + Sbjct: 1 MAAGALLLANPAAPTARHQHRLLQQRRQPRLLASSRPPRWRLS-AVQETKEGEAQTAEEI 59
Query: 219 XRKFGLEAGLWKIFTSKEESDEDGKKQKGA--QAKELLARYGGAYLATSISLSAVSFGLC 392 K+GLE GLWK+F+SKE +E+GK +K QAKELLA+YGGAYLATSI+LS +SF LC Sbjct: 60 TEKYGLEFGLWKVFSSKEGEEEEGKTRKSRTEQAKELLAKYGGAYLATSITLSLISFTLC 119
Query: 393 YVLISSGVDVSGLLQKIGIQTNEASEKVGTLXXXXXXXXXXSPIRFPPTVALTPIVASWL 572 Y+L+S+GVDV LL K+GI T E KVGT SPIRFPPTVALTP+VASW+ Sbjct: 120 YLLVSAGVDVQDLLGKVGIATGETGGKVGTFALAYAAHKAASPIRFPPTVALTPVVASWI 179
Query: 573 GK 578 G+ Sbjct: 180 GR 181
>tr|A2XTA4|A2XTA4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_15840 PE=4 SV=1 Length = 187
Score = 157 bits (397), Expect = 6e-37 Identities = 89/182 (48%), Positives = 112/182 (61%), Gaps = 6/182 (3%) Frame = +3
Query: 51 MASCMYMLGGAATPSTS----LTSPLQAGRLFSSGRPHRLRISCSAXXXXXXXXXXXXXX 218 MA+ +L A P+ L + RL +S RP R R+S + Sbjct: 1 MAAGALLLANPAAPTARHQHRLLQQRRQPRLLASSRPPRWRLS-AVQETKEGEAQTAEEI 59
Query: 219 XRKFGLEAGLWKIFTSKEESDEDGKKQKGA--QAKELLARYGGAYLATSISLSAVSFGLC 392 K+GLE GLWK+F+SKE +E+GK +K QAKELLA+YGGAYLATSI+LS +SF LC Sbjct: 60 TEKYGLEFGLWKVFSSKEGEEEEGKTRKSRTEQAKELLAKYGGAYLATSITLSLISFTLC 119
Query: 393 YVLISSGVDVSGLLQKIGIQTNEASEKVGTLXXXXXXXXXXSPIRFPPTVALTPIVASWL 572 Y+L+S+GVDV LL K+GI T E KVGT SPIRFPPTVALTP+VASW+ Sbjct: 120 YLLVSAGVDVQDLLGKVGIATGETGGKVGTFALAYAAHKAASPIRFPPTVALTPVVASWI 179
Query: 573 GK 578 G+ Sbjct: 180 GR 181
>tr|Q01I48|Q01I48_ORYSA OSIGBa0092M08.4 protein OS=Oryza sativa GN=OSIGBa0092M08.4 PE=4 SV=1 Length = 187
Score = 156 bits (394), Expect = 1e-36 Identities = 88/182 (48%), Positives = 112/182 (61%), Gaps = 6/182 (3%) Frame = +3
Query: 51 MASCMYMLGGAATPSTS----LTSPLQAGRLFSSGRPHRLRISCSAXXXXXXXXXXXXXX 218 MA+ +L A P+ L + RL +S RP R R+S + Sbjct: 1 MAAGALLLANPAAPTARHQHRLLQQRRQPRLLASSRPPRWRLS-AVQETKEGEAQTAEEI 59
Query: 219 XRKFGLEAGLWKIFTSKEESDEDGKKQKGA--QAKELLARYGGAYLATSISLSAVSFGLC 392 K+GLE GLWK+F+SK+ +E+GK +K QAKELLA+YGGAYLATSI+LS +SF LC Sbjct: 60 TEKYGLEFGLWKVFSSKDGEEEEGKTRKSRTEQAKELLAKYGGAYLATSITLSLISFTLC 119
Query: 393 YVLISSGVDVSGLLQKIGIQTNEASEKVGTLXXXXXXXXXXSPIRFPPTVALTPIVASWL 572 Y+L+S+GVDV LL K+GI T E KVGT SPIRFPPTVALTP+VASW+ Sbjct: 120 YLLVSAGVDVQDLLGKVGIATGETGGKVGTFALAYAAHKAASPIRFPPTVALTPVVASWI 179
Query: 573 GK 578 G+ Sbjct: 180 GR 181
>tr|A9NKZ4|A9NKZ4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 216
Score = 156 bits (394), Expect = 1e-36 Identities = 79/126 (62%), Positives = 95/126 (75%), Gaps = 1/126 (0%) Frame = +3
Query: 222 RKFGLEAGLWKIFTSKEE-SDEDGKKQKGAQAKELLARYGGAYLATSISLSAVSFGLCYV 398 ++FGLEAGLWKIFTSK++ + E+ K +K QAKELL RYGGAYLATSISLS VSF +CY+ Sbjct: 86 KRFGLEAGLWKIFTSKDDDTGENAKGKKKNQAKELLTRYGGAYLATSISLSLVSFSVCYL 145
Query: 399 LISSGVDVSGLLQKIGIQTNEASEKVGTLXXXXXXXXXXSPIRFPPTVALTPIVASWLGK 578 LI++GVDV LL K+GI T+E EKVGT SPIRFPPTVALTPIVA W GK Sbjct: 146 LINAGVDVQSLLDKVGIHTDETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVAGWFGK 205
Query: 579 KVTDDK 596 +++ Sbjct: 206 NNKEEE 211
>tr|A8IL11|A8IL11_CHLRE Predicted protein OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_183068 PE=4 SV=1 Length = 186
Score = 129 bits (325), Expect = 1e-28 Identities = 66/119 (55%), Positives = 82/119 (68%) Frame = +3
Query: 225 KFGLEAGLWKIFTSKEESDEDGKKQKGAQAKELLARYGGAYLATSISLSAVSFGLCYVLI 404 KFGLEAGL TSK+E E GK QAK LLA+YG AYL TSIS + VSF CY+ + Sbjct: 58 KFGLEAGLLTALTSKDEGGE-GKLSNTEQAKRLLAQYGSAYLITSISFAIVSFAACYLAV 116
Query: 405 SSGVDVSGLLQKIGIQTNEASEKVGTLXXXXXXXXXXSPIRFPPTVALTPIVASWLGKK 581 SGVD++G+L + G++ ++ SEKVGT SP+RFPPTVALTP+VA +LGKK Sbjct: 117 DSGVDMAGVLARFGLEASDTSEKVGTFALAYAAHKALSPVRFPPTVALTPVVAKYLGKK 175
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