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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944426
Clone id YMU02A01NGRL0006_A11
Library
Length 496
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_A11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AGACCTCCCGATTATCATATCATAGGGAGAGTGATTGTCCTCTCTATTCGATATGGACAT
CTCCATAGCCGCTTCCTCGGCTGTTGTCGCTCCTAGCTGCGCCTCCATCTACAGCTTAGT
CTAAGAGCTTCTCTGGTCTCTCGGCCACTACCCTGTTCGACCCCTCGATCCCCATCCCTC
ATTCCTTTCTCTAACGTCAGCCATAGTGAGACCATGCTTAGTTGTTATCCTTCACACAAC
AATAATTGCTAGACTCTCTCCTACTTGCCACCTTTGTCAAGTGAACAAATTGCGAATCAA
GTTCACTTATTGGTCACACAACGCCGCTACCCCTTGCAATAAGTTCGACAGAATCGAGAG
CGTGAACAGAGAGCACTTCCTCTGTCGCGACTACTGACACATCTGTGGTACTTGATGATG
TGCAATCTGCCCATGTCTCGCTGCACATATGCTGCTTCTGTGCTGCTTGTCCTTGCAGAG
TGCGCCAAGGAGTATC
■■Homology search results ■■ -
sp_hit_id P08705
Definition sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus
Align length 81
Score (bit) 46.6
E-value 6.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944426|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_A11, 5'
         (496 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...    47   6e-05
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...    46   8e-05
sp|P16881|RBS_EUGGR Ribulose bisphosphate carboxylase small chai...    45   1e-04
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...    44   3e-04
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...    43   7e-04
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...    42   0.002
sp|O22077|RBS_FAGCR Ribulose bisphosphate carboxylase small chai...    42   0.002
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...    41   0.003
sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha...    41   0.003
sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai...    41   0.003
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...    41   0.003
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...    41   0.003
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha...    41   0.003
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...    40   0.005
sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha...    40   0.005
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha...    40   0.005
sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha...    40   0.005
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...    40   0.006
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...    40   0.006
sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small cha...    40   0.006
sp|P04716|RBS_SYNP6 Ribulose bisphosphate carboxylase small chai...    40   0.008
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...    40   0.008
sp|P29684|RBS_HEVBR Ribulose bisphosphate carboxylase small chai...    40   0.008
sp|Q44178|RBS_SYNP2 Ribulose bisphosphate carboxylase small chai...    39   0.010
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...    39   0.010
sp|Q39748|RBS6_FLAPR Ribulose bisphosphate carboxylase small cha...    39   0.010
sp|P27569|RBS_PROHO Ribulose bisphosphate carboxylase small chai...    39   0.013
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...    39   0.013
sp|P31333|RBS_GOSHI Ribulose bisphosphate carboxylase small chai...    39   0.017
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...    39   0.017

>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 30/81 (37%), Positives = 38/81 (46%)
 Frame = +1

Query: 253 TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLLTHLWYLMMCNLP 432
           TLSYLPPL+  Q+A +V  L+ ++  P                 S       Y  M  LP
Sbjct: 69  TLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLP 128

Query: 433 MSRCTYAASVLLVLAECAKEY 495
           M  CT +A V+  LAEC KEY
Sbjct: 129 MFGCTDSAQVMKELAECKKEY 149


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 31/81 (38%), Positives = 37/81 (45%)
 Frame = +1

Query: 253 TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLLTHLWYLMMCNLP 432
           TLSYLPPL+++Q+A QV  L+  +  P                 S       Y  M  LP
Sbjct: 71  TLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLP 130

Query: 433 MSRCTYAASVLLVLAECAKEY 495
           M  CT  A VL  L EC KEY
Sbjct: 131 MFGCTDPAQVLNELEECKKEY 151


>sp|P16881|RBS_EUGGR Ribulose bisphosphate carboxylase small chains,
           chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1
          Length = 1273

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
 Frame = +1

Query: 163 PRSPSLIPFSNVSHSETMLSCYPSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYP--- 333
           P+  +++PF++    + M    P +N    T SYLPPLS  QIA QV +++ +   P   
Sbjct: 121 PKVAAVLPFTS---EKDMKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLE 177

Query: 334 LXXXXXXXXXXXXALPLSRLLTHLW---YLMMCNLPMSRCTYAASVLLVLAECAKEY 495
                         +  S      +   Y  M  LPM  CT A+ VL  ++EC + Y
Sbjct: 178 FAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAY 234



 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
 Frame = +1

Query: 229 PSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLL---- 396
           P +N    T SYLPPLS  QIA QV +++ +   P                  R      
Sbjct: 427 PVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAA 486

Query: 397 ----THLWYLMMCNLPMSRCTYAASVLLVLAECAKEY 495
                H W   M  LPM  CT A+ VL  ++EC + Y
Sbjct: 487 GYYDNHYW--TMWKLPMFGCTDASQVLREISECRRAY 521



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
 Frame = +1

Query: 229 PSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYP---LXXXXXXXXXXXXALPLSRLLT 399
           P +N    T SYLPPLS  QIA QV +++ +   P                 +  S    
Sbjct: 284 PVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAA 343

Query: 400 HLW---YLMMCNLPMSRCTYAASVLLVLAECAKEY 495
             +   Y  M  LPM  CT A+ VL  ++EC + Y
Sbjct: 344 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAY 378



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
 Frame = +1

Query: 229 PSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYP---LXXXXXXXXXXXXALPLSRLLT 399
           P +N    T SYLPPLS  QIA QV +++ +   P                 +  S    
Sbjct: 571 PVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAA 630

Query: 400 HLW---YLMMCNLPMSRCTYAASVLLVLAECAKEY 495
             +   Y  M  LPM  CT A+ VL  ++EC + Y
Sbjct: 631 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAY 665



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
 Frame = +1

Query: 229 PSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYP---LXXXXXXXXXXXXALPLSRLLT 399
           P +N    T SYLPPLS  QIA QV +++ +   P                 +  S    
Sbjct: 714 PVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAA 773

Query: 400 HLW---YLMMCNLPMSRCTYAASVLLVLAECAKEY 495
             +   Y  M  LPM  CT A+ VL  ++EC + Y
Sbjct: 774 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAY 808



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
 Frame = +1

Query: 229  PSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYP---LXXXXXXXXXXXXALPLSRLLT 399
            P +N    T SYLPPLS  QIA QV +++ +   P                 +  S    
Sbjct: 859  PVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAA 918

Query: 400  HLW---YLMMCNLPMSRCTYAASVLLVLAECAKEY 495
              +   Y  M  LPM  CT A+ VL  ++EC + Y
Sbjct: 919  GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAY 953



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
 Frame = +1

Query: 229  PSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYP---LXXXXXXXXXXXXALPLSRLLT 399
            P +N    T SYLPPLS  QIA QV +++ +   P                 +  S    
Sbjct: 1002 PVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAA 1061

Query: 400  HLW---YLMMCNLPMSRCTYAASVLLVLAECAKEY 495
              +   Y  M  LPM  CT A+ VL  ++EC + Y
Sbjct: 1062 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAY 1096



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
 Frame = +1

Query: 229  PSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYP---LXXXXXXXXXXXXALPLSRLLT 399
            P +N    T SYLPPLS  QIA QV +++ +   P                 +  S    
Sbjct: 1146 PVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAA 1205

Query: 400  HLW---YLMMCNLPMSRCTYAASVLLVLAECAKEY 495
              +   Y  M  LPM  CT A+ VL  ++EC + Y
Sbjct: 1206 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAY 1240


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 30/81 (37%), Positives = 36/81 (44%)
 Frame = +1

Query: 253 TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLLTHLWYLMMCNLP 432
           TLSYLPPLSSEQ+A +V  L+ +   P                 S       Y  M  LP
Sbjct: 73  TLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLP 132

Query: 433 MSRCTYAASVLLVLAECAKEY 495
           M  C  ++ VL  L EC K Y
Sbjct: 133 MFGCNDSSQVLKELEECKKAY 153


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 27/81 (33%), Positives = 36/81 (44%)
 Frame = +1

Query: 253 TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLLTHLWYLMMCNLP 432
           TLSYLPPLS E ++ ++  L+  +  P                 S       Y  M  LP
Sbjct: 71  TLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLP 130

Query: 433 MSRCTYAASVLLVLAECAKEY 495
           M  CT +A V+  + EC KEY
Sbjct: 131 MFGCTDSAQVMKEVGECKKEY 151


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 32/102 (31%), Positives = 42/102 (41%)
 Frame = +1

Query: 190 SNVSHSETMLSCYPSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXX 369
           +N S    M    P +N    TLSYLPPLS + +A Q+  ++     P            
Sbjct: 51  TNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTR 110

Query: 370 XALPLSRLLTHLWYLMMCNLPMSRCTYAASVLLVLAECAKEY 495
               +        Y  M  LPM  CT +ASVL  + EC K Y
Sbjct: 111 EGSTMPGYYDGR-YWTMWKLPMFGCTDSASVLREIEECKKLY 151


>sp|O22077|RBS_FAGCR Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1
          Length = 182

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 29/81 (35%), Positives = 35/81 (43%)
 Frame = +1

Query: 253 TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLLTHLWYLMMCNLP 432
           TLSYLPPLS E +A Q+  L+ +   P                 S       Y +M  LP
Sbjct: 73  TLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLP 132

Query: 433 MSRCTYAASVLLVLAECAKEY 495
           M  CT A  VL  L E +K Y
Sbjct: 133 MFGCTDATQVLAELQEASKTY 153


>sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1
          Length = 173

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 28/81 (34%), Positives = 35/81 (43%)
 Frame = +1

Query: 253 TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLLTHLWYLMMCNLP 432
           TLSYLP L+  Q+A +V  L+  +  P                 S       Y  M  LP
Sbjct: 64  TLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLP 123

Query: 433 MSRCTYAASVLLVLAECAKEY 495
           M  CT +A V+  L EC KEY
Sbjct: 124 MFGCTDSAQVMKELQECKKEY 144


>sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1
          Length = 173

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 28/81 (34%), Positives = 35/81 (43%)
 Frame = +1

Query: 253 TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLLTHLWYLMMCNLP 432
           TLSYLP L+  Q+A +V  L+  +  P                 S       Y  M  LP
Sbjct: 64  TLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLP 123

Query: 433 MSRCTYAASVLLVLAECAKEY 495
           M  CT +A V+  L EC KEY
Sbjct: 124 MFGCTDSAQVMKELQECKKEY 144


>sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2
          Length = 175

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
 Frame = +1

Query: 148 LPCSTPRS---PSLIPFSNVSHSETMLSCYPSHNNNC*TLSYLPPLSSEQIANQVHLLVT 318
           +PC+T +    P  +    +S S  M+   P +N    T SYLPPL+ +QI  QV  ++ 
Sbjct: 11  VPCATTKQIVRPRFLSNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILR 70

Query: 319 QRRYPLXXXXXXXXXXXXALPLSRL------LTHLWYLMMCNLPMSRCTYAASVLLVLAE 480
               P                  R+           Y  M  LPM  C   + VL  ++ 
Sbjct: 71  NNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISA 130

Query: 481 CAKEY 495
           C K +
Sbjct: 131 CTKAF 135
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 111
Score (bit) 58.5
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944426|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_A11, 5'
         (496 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...    59   3e-08
tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small c...    46   9e-04
tr|Q9STC5|Q9STC5_EUGGR Ribulose bisphosphate carboxylase small c...    45   0.001
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...    45   0.001
tr|Q96360|Q96360_BETVE Ribulose bisphosphate carboxylase small c...    44   0.003
tr|A5PJI4|A5PJI4_BOVIN Putative uncharacterized protein OS=Bos t...    44   0.003
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...    43   0.003
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...    44   0.006
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...    43   0.007
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...    43   0.007
tr|Q84Y16|Q84Y16_CHRMO Ribulose bisphosphate carboxylase small c...    43   0.009
tr|Q5ZF94|Q5ZF94_PLAMJ Ribulose bisphosphate carboxylase small c...    43   0.009
tr|Q5ZF97|Q5ZF97_PLAMJ Ribulose bisphosphate carboxylase small c...    42   0.012
tr|Q5XR40|Q5XR40_DUNSA Ribulose bisphosphate carboxylase small c...    42   0.012
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...    41   0.013
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...    41   0.013
tr|Q8DIS7|Q8DIS7_THEEB Ribulose bisphosphate carboxylase small c...    42   0.016
tr|Q02519|Q02519_SYNSP Ribulose bisphosphate carboxylase small c...    42   0.016
tr|A3KFC7|A3KFC7_THEVL Ribulose bisphosphate carboxylase small c...    42   0.016
tr|Q9AUJ3|Q9AUJ3_FLAPA Ribulose bisphosphate carboxylase small c...    42   0.016
tr|Q9AQX3|Q9AQX3_FLAPA Ribulose bisphosphate carboxylase small c...    42   0.016
tr|Q84NG4|Q84NG4_FLABI Ribulose bisphosphate carboxylase small c...    42   0.016
tr|Q64FQ1|Q64FQ1_FAGSY Ribulose bisphosphate carboxylase small c...    42   0.016
tr|A9NXP2|A9NXP2_PICSI Ribulose bisphosphate carboxylase small c...    42   0.016
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...    42   0.016
tr|Q84U91|Q84U91_VOLCA Ribulose bisphosphate carboxylase small c...    42   0.021
tr|Q84NG5|Q84NG5_FLABI Ribulose bisphosphate carboxylase small c...    42   0.021
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...    42   0.021
tr|Q9AUJ5|Q9AUJ5_FLARA Ribulose bisphosphate carboxylase small c...    41   0.027
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...    41   0.027

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score = 58.5 bits (140), Expect(2) = 3e-08
 Identities = 40/111 (36%), Positives = 53/111 (47%)
 Frame = +1

Query: 163 PRSPSLIPFSNVSHSETMLSCYPSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYPLXX 342
           P+  + +  SN S    ML   P  N    TLSYLPPL+++QIA QV  +V +   P   
Sbjct: 37  PKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIE 96

Query: 343 XXXXXXXXXXALPLSRLLTHLWYLMMCNLPMSRCTYAASVLLVLAECAKEY 495
                         S      +++M   LPM  CT + SVL  +AECAKEY
Sbjct: 97  FDTIGSVYREHFHGSGYYDGRYWIMW-KLPMFGCTDSGSVLREIAECAKEY 146



 Score = 22.3 bits (46), Expect(2) = 3e-08
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 129 FSGLSATTLFDPSIPIP 179
           FSGL A TLF P    P
Sbjct: 26  FSGLKANTLFAPKCANP 42


>tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small
           chain OS=Spinacia oleracea GN=rbcS PE=2 SV=1
          Length = 180

 Score = 46.2 bits (108), Expect = 9e-04
 Identities = 31/81 (38%), Positives = 37/81 (45%)
 Frame = +1

Query: 253 TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLLTHLWYLMMCNLP 432
           TLSYLPPL+++Q+A QV  L+  +  P                 S       Y  M  LP
Sbjct: 71  TLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLP 130

Query: 433 MSRCTYAASVLLVLAECAKEY 495
           M  CT  A VL  L EC KEY
Sbjct: 131 MFGCTDPAQVLNELEECKKEY 151


>tr|Q9STC5|Q9STC5_EUGGR Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Euglena gracilis GN=rbcS PE=3 SV=1
          Length = 271

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
 Frame = +1

Query: 163 PRSPSLIPFSNVSHSETMLSCYPSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYP--- 333
           P+  +++PF++    + M    P +N    T SYLPPLS  QIA QV +++ +   P   
Sbjct: 121 PKVAAVLPFTS---EKDMKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLE 177

Query: 334 LXXXXXXXXXXXXALPLSRLLTHLW---YLMMCNLPMSRCTYAASVLLVLAECAKEY 495
                         +  S      +   Y  M  LPM  CT A+ VL  ++EC + Y
Sbjct: 178 FAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAY 234


>tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_106210 PE=3 SV=1
          Length = 182

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 34/112 (30%), Positives = 45/112 (40%)
 Frame = +1

Query: 160 TPRSPSLIPFSNVSHSETMLSCYPSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYPLX 339
           T ++ +L    N S  + M    P       T SYLPPLS + IA QV  ++ Q+  P  
Sbjct: 44  TSKAETLSSVQNGSRVQCMQVWNPIGQTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCL 103

Query: 340 XXXXXXXXXXXALPLSRLLTHLWYLMMCNLPMSRCTYAASVLLVLAECAKEY 495
                      A   S       Y  M  LPM  C  +A VL  + EC K +
Sbjct: 104 EFDVNSNGVSRANNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTF 155


>tr|Q96360|Q96360_BETVE Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Betula verrucosa GN=rbcS PE=3 SV=1
          Length = 110

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 30/81 (37%), Positives = 36/81 (44%)
 Frame = +1

Query: 253 TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLLTHLWYLMMCNLP 432
           TLSYLPPLSSEQ+A +V  L+ +   P                 S       Y  M  LP
Sbjct: 17  TLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLP 76

Query: 433 MSRCTYAASVLLVLAECAKEY 495
           M  C  ++ VL  L EC K Y
Sbjct: 77  MFGCNDSSQVLKELEECKKAY 97


>tr|A5PJI4|A5PJI4_BOVIN Putative uncharacterized protein OS=Bos
           taurus PE=2 SV=1
          Length = 179

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 30/81 (37%), Positives = 36/81 (44%)
 Frame = +1

Query: 253 TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLLTHLWYLMMCNLP 432
           TLSYLPPL+  Q+A +V  L+  +  P                 S       Y  M  LP
Sbjct: 70  TLSYLPPLTETQLAKEVDYLLRNKWVPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLP 129

Query: 433 MSRCTYAASVLLVLAECAKEY 495
           M  CT +A VL  L EC KEY
Sbjct: 130 MFGCTDSAQVLKELNECKKEY 150


>tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_233894 PE=3 SV=1
          Length = 182

 Score = 43.1 bits (100), Expect(2) = 0.003
 Identities = 33/110 (30%), Positives = 44/110 (40%)
 Frame = +1

Query: 166 RSPSLIPFSNVSHSETMLSCYPSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYPLXXX 345
           ++ +L    N S  + M    P       T SYLPPLS + IA QV  ++ Q+  P    
Sbjct: 46  KAQTLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEF 105

Query: 346 XXXXXXXXXALPLSRLLTHLWYLMMCNLPMSRCTYAASVLLVLAECAKEY 495
                    A   S       Y  M  LPM  C  +A VL  + EC K +
Sbjct: 106 DVNANGVSRANNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTF 155



 Score = 20.4 bits (41), Expect(2) = 0.003
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 129 FSGLSATTLF 158
           FSGL +TTLF
Sbjct: 34  FSGLKSTTLF 43


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 35/114 (30%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
 Frame = +1

Query: 160 TPRSPSLIPFSNVSHSETMLSCYPSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYPLX 339
           T +S  L    N S  + M    P       T SYLPPLS +QIA QV  ++ Q   P  
Sbjct: 44  TSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQVDYMIQQNLIPCI 103

Query: 340 XXXXXXXXXXXALPLSRLLTHL--WYLMMCNLPMSRCTYAASVLLVLAECAKEY 495
                          S    +    Y  M  LPM  CT ++ VL  + EC   Y
Sbjct: 104 EFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQECKTSY 157


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 27/81 (33%), Positives = 36/81 (44%)
 Frame = +1

Query: 253 TLSYLPPLSSEQIANQVHLLVTQRRYPLXXXXXXXXXXXXALPLSRLLTHLWYLMMCNLP 432
           TLSYLPPLS E ++ ++  L+  +  P                 S       Y  M  LP
Sbjct: 71  TLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLP 130

Query: 433 MSRCTYAASVLLVLAECAKEY 495
           M  CT +A V+  + EC KEY
Sbjct: 131 MFGCTDSAQVMKEVGECKKEY 151


>tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_110675 PE=3 SV=1
          Length = 182

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 33/112 (29%), Positives = 44/112 (39%)
 Frame = +1

Query: 160 TPRSPSLIPFSNVSHSETMLSCYPSHNNNC*TLSYLPPLSSEQIANQVHLLVTQRRYPLX 339
           T ++ +L    N S  + M    P       T SYLPPLS + IA QV  ++ Q+  P  
Sbjct: 44  TSKAQTLSSVQNRSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCL 103

Query: 340 XXXXXXXXXXXALPLSRLLTHLWYLMMCNLPMSRCTYAASVLLVLAECAKEY 495
                          S       Y  M  LPM  C  +A VL  + EC K +
Sbjct: 104 EFDVNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTF 155