DK944428
Clone id YMU02A01NGRL0006_A14
Library
Length 284
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_A14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGTCTGCATGAGAATGCATCG
AGGCGGCTTGTCTTGGTGTGATTTAGAATCCCACCCGAATTGAAGTGTATCAGAGGCCTC
AATGTTGAGGCCAAAAGTTTTGTAGATCAGAGGGAACCATTTCTCAAATTTCTTTTGGTC
TCTGTGGATGGAGATTTAAGTTATGATTGCCTTTTCTGTGCCTTTTTGTAATGTGACTAC
TGCTCGTTATGTGTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q2VEI5
Definition sp|Q2VEI5|RPOC1_SOLTU DNA-directed RNA polymerase subunit beta' OS=Solanum tuberosum
Align length 30
Score (bit) 29.6
E-value 4.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944428|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_A14, 5'
(216 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2VEI5|RPOC1_SOLTU DNA-directed RNA polymerase subunit beta' ... 30 4.8
sp|Q5C6R9|SJ381_SCHJA UPF0506 protein SJCHGC02381 OS=Schistosoma... 30 4.9
sp|Q5BX25|SJ965_SCHJA UPF0506 protein SJCHGC02965 (Fragment) OS=... 29 8.3

>sp|Q2VEI5|RPOC1_SOLTU DNA-directed RNA polymerase subunit beta'
OS=Solanum tuberosum GN=rpoC1 PE=3 SV=2
Length = 687

Score = 29.6 bits (65), Expect = 4.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1

Query: 25 GLSWCDLESHPN*SVSEASMLRPKVL*IRG 114
GL +CD+ES+PN S + +P L +RG
Sbjct: 139 GLVYCDIESYPNFSFARPITKKPTFLRLRG 168


>sp|Q5C6R9|SJ381_SCHJA UPF0506 protein SJCHGC02381 OS=Schistosoma
japonicum GN=SJCHGC02381 PE=2 SV=3
Length = 150

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2

Query: 38 VI*NPTRIEVYQRPQC*GQKFCRSEG 115
+I N T+IE PQ QK+CR+EG
Sbjct: 61 IIENETKIEALNLPQIPKQKYCRTEG 86


>sp|Q5BX25|SJ965_SCHJA UPF0506 protein SJCHGC02965 (Fragment)
OS=Schistosoma japonicum GN=SJCHGC02965 PE=2 SV=2
Length = 161

Score = 28.9 bits (63), Expect = 8.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2

Query: 38 VI*NPTRIEVYQRPQC*GQKFCRSEG 115
+I N T+IE PQ QK+C+SEG
Sbjct: 72 IIENETKIEALNLPQNPKQKYCKSEG 97


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944428|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_A14, 5'
(216 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******