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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944435
Clone id YMU02A01NGRL0006_A21
Library
Length 439
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_A21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTAGAGCTAAGGGAAAAGCTAACAGGGAGCGAAAAAGTGCCAGGAGGGAAGAGCGCTTGG
CACAGGGATTGAGTACTGAAGCAGCACCAGCCATCCCTGCAGCTGCCCCCGAGGCCACCA
AGAAGTCCAAGAAGTGAGCAGCATAGCAAGATTTAGCTAAGAGCTGTGTCCTTAAATAGA
AACCTTGGACCATTGAGCTTGTGTAATGAGATACAGTTTCTGCTTTACTTTTGAAAGCAC
GACTATTGCAAGCCTAAAAGGGTTTGCATTTTGCAATTTTCCCCCATTTCTTTCTTTGAC
TATTGGTTATTGTTGCCGAGACAGTTAATGTTGTTTCCAAATGTATCAGGGTGTCCATCA
TTGCATCTCTCTGAAGTAAAAATAACTCATAACTACAGTTCTTGTGTACNAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P49693
Definition sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis thaliana
Align length 22
Score (bit) 38.1
E-value 0.014
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944435|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_A21, 5'
         (410 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis...    38   0.014
sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis...    38   0.014
sp|Q9LUQ6|RL192_ARATH 60S ribosomal protein L19-2 OS=Arabidopsis...    37   0.024
sp|Q66IV1|CK009_XENLA Uncharacterized protein C11orf9 homolog OS...    30   5.0  
sp|A0T0Q9|RPOC2_THAPS DNA-directed RNA polymerase subunit beta''...    29   6.5  
sp|P12938|CP2D3_RAT Cytochrome P450 2D3 OS=Rattus norvegicus GN=...    29   6.5  

>sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis
           thaliana GN=RPL19C PE=2 SV=3
          Length = 208

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK ARREERLA+G
Sbjct: 163 RAKNKASRERKHARREERLAKG 184


>sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis
           thaliana GN=RPL19A PE=2 SV=1
          Length = 214

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK ARREERLA+G
Sbjct: 163 RAKNKASRERKHARREERLAKG 184


>sp|Q9LUQ6|RL192_ARATH 60S ribosomal protein L19-2 OS=Arabidopsis
           thaliana GN=RPL19B PE=2 SV=1
          Length = 209

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           R K KA+RERK ARREERLAQG
Sbjct: 163 RIKNKASRERKFARREERLAQG 184


>sp|Q66IV1|CK009_XENLA Uncharacterized protein C11orf9 homolog
            OS=Xenopus laevis PE=2 SV=1
          Length = 1092

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
 Frame = +1

Query: 262  VCILQFSPISFFDYWLLLPRQLMLF------PNVSGCPSLHLSEVKITHNY 396
            VC+ Q SP S      LLP Q   F      P  SGC  L +   ++T  Y
Sbjct: 1034 VCVTQVSPTSHLWSLQLLPSQDFTFHLRVSPPGASGCDDLSIDPSQVTDYY 1084


>sp|A0T0Q9|RPOC2_THAPS DNA-directed RNA polymerase subunit beta''
           OS=Thalassiosira pseudonana GN=rpoC2 PE=3 SV=1
          Length = 1446

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 328 LTVSATITNSQRKKWGKIAKCKPF*ACNSRAFKSKAETVSHYTSSMVQGF 179
           LT   T+ +S  K W +  K KPF    +  FK+    + +Y   + Q F
Sbjct: 551 LTYLITLKDSNSKNWKRCKKYKPFATSFNNNFKTLTGGIMYYDQRIKQKF 600


>sp|P12938|CP2D3_RAT Cytochrome P450 2D3 OS=Rattus norvegicus
           GN=Cyp2d3 PE=2 SV=2
          Length = 500

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 196 SLCNEIQFLLYF*KHDYCKPKRVCILQFSPISFFDYWLLLPRQLMLFPNVSGCPSL 363
           ++CN I  L+Y  + DY  P  + +L+    S  +   L P  L +FP +   P L
Sbjct: 184 AVCNVIASLIYARRFDYGDPDFIKVLKILKESMGEQTGLFPEVLNMFPVLLRIPGL 239
tr_hit_id B6TQ68
Definition tr|B6TQ68|B6TQ68_MAIZE 60S ribosomal protein L19-3 OS=Zea mays
Align length 22
Score (bit) 40.4
E-value 0.045
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944435|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_A21, 5'
         (410 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6TQ68|B6TQ68_MAIZE 60S ribosomal protein L19-3 OS=Zea mays P...    40   0.045
tr|Q6RYC4|Q6RYC4_CAPAN Ribosomal protein L19 OS=Capsicum annuum ...    39   0.100
tr|Q2PYW9|Q2PYW9_SOLTU Ribosomal protein L19 OS=Solanum tuberosu...    39   0.100
tr|Q10LR6|Q10LR6_ORYSJ Ribosomal protein L19 OS=Oryza sativa sub...    39   0.100
tr|B6VC49|B6VC49_VERFO 60s ribosome protein L19 OS=Vernicia ford...    39   0.100
tr|B6T7A2|B6T7A2_MAIZE 60S ribosomal protein L19-3 OS=Zea mays P...    39   0.100
tr|B6T1F1|B6T1F1_MAIZE 60S ribosomal protein L19-3 OS=Zea mays P...    39   0.100
tr|B4FL64|B4FL64_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.100
tr|B4FJZ7|B4FJZ7_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.100
tr|B3TM28|B3TM28_ELAGV Ribosomal protein L19 OS=Elaeis guineensi...    39   0.100
tr|B3TM22|B3TM22_ELAGV Ribosomal protein L19 OS=Elaeis guineensi...    39   0.100
tr|A9SUU6|A9SUU6_PHYPA Ribosomal protein L19 OS=Physcomitrella p...    39   0.100
tr|A9PB34|A9PB34_POPTR Ribosomal protein L19 OS=Populus trichoca...    39   0.100
tr|A9P9N8|A9P9N8_POPTR Ribosomal protein L19 OS=Populus trichoca...    39   0.100
tr|A9P1I1|A9P1I1_PICSI Ribosomal protein L19 OS=Picea sitchensis...    39   0.100
tr|A9NU99|A9NU99_PICSI Ribosomal protein L19 OS=Picea sitchensis...    39   0.100
tr|A9NST2|A9NST2_PICSI Ribosomal protein L19 OS=Picea sitchensis...    39   0.100
tr|A9NRT3|A9NRT3_PICSI Ribosomal protein L19 OS=Picea sitchensis...    39   0.100
tr|A7Q8H2|A7Q8H2_VITVI Ribosomal protein L19 OS=Vitis vinifera G...    39   0.100
tr|A7Q0G7|A7Q0G7_VITVI Ribosomal protein L19 OS=Vitis vinifera G...    39   0.100
tr|A2XIU7|A2XIU7_ORYSI Ribosomal protein L19 OS=Oryza sativa sub...    39   0.100
tr|A2XGG9|A2XGG9_ORYSI Ribosomal protein L19 OS=Oryza sativa sub...    39   0.100
tr|A1IW31|A1IW31_9LAMI Ribosomal protein L19 (Fragment) OS=Phill...    39   0.100
tr|A1A4M1|A1A4M1_BOVIN Ribosomal protein L19 OS=Bos taurus PE=2 ...    39   0.100
tr|A9S5S6|A9S5S6_PHYPA Ribosomal protein L19 OS=Physcomitrella p...    39   0.13 
tr|Q84NX8|Q84NX8_ORYSJ Ribosomal protein L19 OS=Oryza sativa sub...    38   0.22 
tr|B7FN66|B7FN66_MEDTR Putative uncharacterized protein OS=Medic...    38   0.22 
tr|B7FHF4|B7FHF4_MEDTR Putative uncharacterized protein OS=Medic...    38   0.22 
tr|B7FH56|B7FH56_MEDTR Putative uncharacterized protein OS=Medic...    38   0.22 
tr|Q677F2|Q677F2_HYAOR Ribosomal protein L19 OS=Hyacinthus orien...    38   0.29 

>tr|B6TQ68|B6TQ68_MAIZE 60S ribosomal protein L19-3 OS=Zea mays PE=2
           SV=1
          Length = 207

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK+ARREERLAQG
Sbjct: 163 RAKSKASRERKNARREERLAQG 184


>tr|Q6RYC4|Q6RYC4_CAPAN Ribosomal protein L19 OS=Capsicum annuum
           PE=2 SV=1
          Length = 232

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK ARREERLAQG
Sbjct: 163 RAKNKASRERKFARREERLAQG 184


>tr|Q2PYW9|Q2PYW9_SOLTU Ribosomal protein L19 OS=Solanum tuberosum
           PE=2 SV=1
          Length = 209

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK ARREERLAQG
Sbjct: 163 RAKNKASRERKFARREERLAQG 184


>tr|Q10LR6|Q10LR6_ORYSJ Ribosomal protein L19 OS=Oryza sativa subsp.
           japonica GN=Os03g0337800 PE=2 SV=1
          Length = 208

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK ARREERLAQG
Sbjct: 163 RAKSKASRERKIARREERLAQG 184


>tr|B6VC49|B6VC49_VERFO 60s ribosome protein L19 OS=Vernicia fordii
           GN=RPL19B PE=2 SV=1
          Length = 206

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK ARREERLAQG
Sbjct: 163 RAKNKASRERKFARREERLAQG 184


>tr|B6T7A2|B6T7A2_MAIZE 60S ribosomal protein L19-3 OS=Zea mays PE=2
           SV=1
          Length = 207

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK ARREERLAQG
Sbjct: 163 RAKSKASRERKIARREERLAQG 184


>tr|B6T1F1|B6T1F1_MAIZE 60S ribosomal protein L19-3 OS=Zea mays PE=2
           SV=1
          Length = 207

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK ARREERLAQG
Sbjct: 163 RAKSKASRERKIARREERLAQG 184


>tr|B4FL64|B4FL64_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 207

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK ARREERLAQG
Sbjct: 163 RAKSKASRERKIARREERLAQG 184


>tr|B4FJZ7|B4FJZ7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 208

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK ARREERLAQG
Sbjct: 163 RAKSKASRERKIARREERLAQG 184


>tr|B3TM28|B3TM28_ELAGV Ribosomal protein L19 OS=Elaeis guineensis
           var. tenera PE=2 SV=1
          Length = 206

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   RAKGKANRERKSARREERLAQG 68
           RAK KA+RERK ARREERLAQG
Sbjct: 163 RAKSKASRERKFARREERLAQG 184