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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944436
Clone id YMU02A01NGRL0006_A22
Library
Length 331
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_A22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTGATTATCGGACCCTTTGATGAGGGATAAGATGATGAATATTTTGATTCGATTCCTGGT
GCGTCTAACGGTGTTGAATCAAGAAAAGAGCTCTCTGCTCAAGCTCTAAAGAAGTGTTAT
GTTAAGTGGAGAGTGAAGGGAGACACACGATGAAAAGGAAGCACGTAGAGAATCGGTCCA
CTGCTCATAGGCAAAGCGGAAGAAGATAACATTTCTGAGAGGCTTGTAGGTTTTTCCAAG
AATACTAATTAATTACCCACACCCCTTGTGCTACCATTGTAATAAAAAATACCATATTCT
CTCTAGAGTAAATATTTATAATTGTTCTCTG
■■Homology search results ■■ -
sp_hit_id Q761Z9
Definition sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica
Align length 48
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944436|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_A22, 5'
         (331 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=O...    29   6.4  
sp|Q332R7|YCF2_LACSA Protein ycf2 OS=Lactuca sativa GN=ycf2-A PE...    29   8.4  

>sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18
           OS=Oryza sativa subsp. japonica GN=Os01g0164500 PE=1
           SV=2
          Length = 647

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 16  FDEG*DDEYFDSIPGASNGVESRKELSAQALKKCYVKWRVKGDTR*KG 159
           F E  DD   DS  G  + ++ RKE   + LKK   K + KG  R +G
Sbjct: 594 FGESDDD---DSSDGGDSDLDERKERGNKVLKKIKQKGKAKGSRRFEG 638


>sp|Q332R7|YCF2_LACSA Protein ycf2 OS=Lactuca sativa GN=ycf2-A PE=3
            SV=1
          Length = 2264

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +2

Query: 155  KEARRESVHCS*AKRKKITFLRGL*VFPRILINYPHPLCYHCNKKYHIL---SRVNIYN 322
            K   R S+  S  K  ++ FL           N PH  C++CNK++      +R+N Y+
Sbjct: 995  KSFHRSSLRSSFYKANQLRFL-----------NNPHHFCFYCNKRFPFYVEKARINNYD 1042
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944436|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_A22, 5'
         (331 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******