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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944439
Clone id YMU02A01NGRL0006_B02
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_B02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCTTCGTAAGATTGATTCCGAAGGAAAAGCGCGGAAGGTTGTTGGCTGCTCCTGTGTTGT
TGTAAAGGACTATGGAGAAGAGACAGAGGGTCTGAATGTCGTCCAAGAGTACCTGAAAAG
TCATTAGTCCACTGGAGTCTGGACTCTGCATGTTACATTTTCGAGGCTGTGGTTCTGATG
GATGTAGAGAGAGATTCCATTTATGAAGGAAAATTTTGCAGAGGTTCTGTTCGAACCTTC
TAGATTTTGTGTTTGATTACCTTTGCAATTTTGAAACTGGGCTCTAAAGTTATGTGTTAA
CATTGAAGCACAAGCAACTAGCTTTTATGAGTTTGCCGAAGATCGCAGTGTGCTGCCCAA
TACTTTTTTTCTATTAAAACAGACTTTCTACTAANAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9XHS0
Definition sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12 OS=Hordeum vulgare
Align length 40
Score (bit) 74.3
E-value 2.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944439|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_B02, 5'
         (392 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12 OS=Hordeum vulgar...    74   2e-13
sp|Q9SKZ3|RS122_ARATH 40S ribosomal protein S12-2 OS=Arabidopsis...    63   4e-10
sp|O13019|RS12_ORENI 40S ribosomal protein S12 OS=Oreochromis ni...    62   7e-10
sp|P47840|RS12_XENLA 40S ribosomal protein S12 OS=Xenopus laevis...    61   2e-09
sp|P63324|RS12_RAT 40S ribosomal protein S12 OS=Rattus norvegicu...    61   2e-09
sp|P46405|RS12_PIG 40S ribosomal protein S12 OS=Sus scrofa GN=RP...    61   2e-09
sp|P63323|RS12_MOUSE 40S ribosomal protein S12 OS=Mus musculus G...    61   2e-09
sp|P25398|RS12_HUMAN 40S ribosomal protein S12 OS=Homo sapiens G...    61   2e-09
sp|P84175|RS12_CHICK 40S ribosomal protein S12 OS=Gallus gallus ...    61   2e-09
sp|Q76I81|RS12_BOVIN 40S ribosomal protein S12 OS=Bos taurus GN=...    61   2e-09
sp|Q9S9P1|RS121_ARATH 40S ribosomal protein S12-1 OS=Arabidopsis...    60   3e-09
sp|Q9SMI3|RS12_CYAPA 40S ribosomal protein S12 OS=Cyanophora par...    57   3e-08
sp|P80455|RS12_DROME 40S ribosomal protein S12 OS=Drosophila mel...    55   8e-08
sp|P48589|RS12_YEAST 40S ribosomal protein S12 OS=Saccharomyces ...    47   4e-05
sp|P49196|RS12_CAEEL 40S ribosomal protein S12 OS=Caenorhabditis...    45   9e-05
sp|O14062|RS12A_SCHPO 40S ribosomal protein S12-A OS=Schizosacch...    45   1e-04
sp|O59936|RS12_ERYGR 40S ribosomal protein S12 OS=Erysiphe grami...    44   3e-04
sp|O74322|RS12B_SCHPO 40S ribosomal protein S12-B OS=Schizosacch...    44   3e-04
sp|Q54PX9|RS12_DICDI 40S ribosomal protein S12 OS=Dictyostelium ...    38   0.014
sp|Q03253|RS12_TRYBB 40S ribosomal protein S12 OS=Trypanosoma br...    37   0.031
sp|O97249|RS12_PLAF7 40S ribosomal protein S12 OS=Plasmodium fal...    37   0.031
sp|Q12116|TMS1_YEAST Membrane protein TMS1 OS=Saccharomyces cere...    31   2.2  
sp|Q5XI31|PIGS_RAT GPI transamidase component PIG-S OS=Rattus no...    29   8.4  
sp|Q6PD26|PIGS_MOUSE GPI transamidase component PIG-S OS=Mus mus...    29   8.4  
sp|Q96S52|PIGS_HUMAN GPI transamidase component PIG-S OS=Homo sa...    29   8.4  
sp|Q8PUN1|COOS2_METMA Carbon monoxide dehydrogenase 2 OS=Methano...    29   8.4  
sp|Q8TR73|COOS2_METAC Carbon monoxide dehydrogenase 2 OS=Methano...    29   8.4  

>sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12 OS=Hordeum vulgare
           GN=RPS12 PE=2 SV=1
          Length = 143

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 33/40 (82%), Positives = 39/40 (97%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKS 121
           L KID+EGKARKVVGCSC+VVKDYGEE+EGLN+VQ+Y+KS
Sbjct: 103 LCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142


>sp|Q9SKZ3|RS122_ARATH 40S ribosomal protein S12-2 OS=Arabidopsis
           thaliana GN=RPS12C PE=2 SV=1
          Length = 144

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSH 124
           L KIDSEG ARKVVGCSC+V+KD+GEET  LN+V+++L S+
Sbjct: 104 LCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144


>sp|O13019|RS12_ORENI 40S ribosomal protein S12 OS=Oreochromis
           niloticus GN=rps12 PE=2 SV=3
          Length = 132

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKS 121
           L KID EGK RKVVGCSCVVVKDYG+E++  +V++EY KS
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKS 130


>sp|P47840|RS12_XENLA 40S ribosomal protein S12 OS=Xenopus laevis
           GN=rps12 PE=2 SV=2
          Length = 132

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 118
           L KID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>sp|P63324|RS12_RAT 40S ribosomal protein S12 OS=Rattus norvegicus
           GN=Rps12 PE=1 SV=2
          Length = 132

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 118
           L KID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>sp|P46405|RS12_PIG 40S ribosomal protein S12 OS=Sus scrofa GN=RPS12
           PE=2 SV=2
          Length = 132

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 118
           L KID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>sp|P63323|RS12_MOUSE 40S ribosomal protein S12 OS=Mus musculus
           GN=Rps12 PE=1 SV=2
          Length = 132

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 118
           L KID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>sp|P25398|RS12_HUMAN 40S ribosomal protein S12 OS=Homo sapiens
           GN=RPS12 PE=1 SV=3
          Length = 132

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 118
           L KID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>sp|P84175|RS12_CHICK 40S ribosomal protein S12 OS=Gallus gallus
           GN=RPS12 PE=1 SV=2
          Length = 132

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 118
           L KID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>sp|Q76I81|RS12_BOVIN 40S ribosomal protein S12 OS=Bos taurus
           GN=RPS12 PE=2 SV=1
          Length = 132

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLK 118
           L KID EGK RKVVGCSCVVVKDYG+E++  +V++EY K
Sbjct: 91  LCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
tr_hit_id A9NQ79
Definition tr|A9NQ79|A9NQ79_PICSI 40S ribosomal protein S12 OS=Picea sitchensis
Align length 41
Score (bit) 80.5
E-value 4.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944439|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_B02, 5'
         (392 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NQ79|A9NQ79_PICSI 40S ribosomal protein S12 OS=Picea sitche...    80   4e-14
tr|B6SKZ9|B6SKZ9_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=...    80   5e-14
tr|B6SHY8|B6SHY8_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=...    80   5e-14
tr|B6SGF1|B6SGF1_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=...    80   5e-14
tr|B4FGC8|B4FGC8_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=...    80   5e-14
tr|A9NPA9|A9NPA9_PICSI 40S ribosomal protein S12 OS=Picea sitche...    79   9e-14
tr|Q6ZLP8|Q6ZLP8_ORYSJ 40S ribosomal protein S12 OS=Oryza sativa...    79   1e-13
tr|B8B7B6|B8B7B6_ORYSI Putative uncharacterized protein OS=Oryza...    79   1e-13
tr|B6TCB8|B6TCB8_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=...    79   1e-13
tr|B8LNN0|B8LNN0_PICSI Putative uncharacterized protein OS=Picea...    79   1e-13
tr|Q8H2J8|Q8H2J8_ORYSJ 40S ribosomal protein S12 OS=Oryza sativa...    77   3e-13
tr|A2YJM2|A2YJM2_ORYSI 40S ribosomal protein S12 OS=Oryza sativa...    77   3e-13
tr|A9TAH6|A9TAH6_PHYPA 40S ribosomal protein S12 OS=Physcomitrel...    77   4e-13
tr|A9RT00|A9RT00_PHYPA 40S ribosomal protein S12 (Fragment) OS=P...    77   6e-13
tr|A9U0N3|A9U0N3_PHYPA 40S ribosomal protein S12 OS=Physcomitrel...    76   1e-12
tr|A7PFT0|A7PFT0_VITVI 40S ribosomal protein S12 OS=Vitis vinife...    73   8e-12
tr|A9P9I0|A9P9I0_POPTR 40S ribosomal protein S12 OS=Populus tric...    72   1e-11
tr|A9QW59|A9QW59_PANQU Putative uncharacterized protein (Fragmen...    72   1e-11
tr|A9P9K3|A9P9K3_POPTR 40S ribosomal protein S12 OS=Populus tric...    70   7e-11
tr|A9PJY6|A9PJY6_POPJC 40S ribosomal protein S12 OS=Populus jack...    69   1e-10
tr|A9PDC2|A9PDC2_POPTR 40S ribosomal protein S12 OS=Populus tric...    69   1e-10
tr|Q4PEZ5|Q4PEZ5_USTMA 40S ribosomal protein S12 OS=Ustilago may...    67   3e-10
tr|Q0PXZ6|Q0PXZ6_DIACI 40S ribosomal protein S12 OS=Diaphorina c...    67   6e-10
tr|A8UFV4|A8UFV4_9ANNE 40S ribosomal protein S12 OS=Eurythoe com...    67   6e-10
tr|Q86PL3|Q86PL3_PERAI 40S ribosomal protein S12 OS=Perinereis a...    66   1e-09
tr|A8J9T0|A8J9T0_CHLRE 40S ribosomal protein S12 OS=Chlamydomona...    65   2e-09
tr|Q962R7|Q962R7_SPOFR 40S ribosomal protein S12 OS=Spodoptera f...    65   2e-09
tr|Q8T9N6|Q8T9N6_BRABE 40S ribosomal protein S12 OS=Branchiostom...    65   2e-09
tr|Q8ISP4|Q8ISP4_BRABE 40S ribosomal protein S12 OS=Branchiostom...    65   2e-09
tr|Q6F464|Q6F464_PLUXY 40S ribosomal protein S12 OS=Plutella xyl...    65   2e-09

>tr|A9NQ79|A9NQ79_PICSI 40S ribosomal protein S12 OS=Picea
           sitchensis PE=2 SV=1
          Length = 141

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSH 124
           L KIDSEGKARKVVGCSCVVVKDYGEETEGLNV+QEY+K+H
Sbjct: 101 LCKIDSEGKARKVVGCSCVVVKDYGEETEGLNVIQEYVKTH 141


>tr|B6SKZ9|B6SKZ9_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=2
           SV=1
          Length = 140

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSH 124
           L KIDSEGKARKVVGCSCVVVKDYGEE+EGLN+VQEY+KSH
Sbjct: 100 LCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQEYVKSH 140


>tr|B6SHY8|B6SHY8_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=2
           SV=1
          Length = 140

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSH 124
           L KIDSEGKARKVVGCSCVVVKDYGEE+EGLN+VQEY+KSH
Sbjct: 100 LCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQEYVKSH 140


>tr|B6SGF1|B6SGF1_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=2
           SV=1
          Length = 140

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSH 124
           L KIDSEGKARKVVGCSCVVVKDYGEE+EGLN+VQEY+KSH
Sbjct: 100 LCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQEYVKSH 140


>tr|B4FGC8|B4FGC8_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=2
           SV=1
          Length = 140

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 37/41 (90%), Positives = 40/41 (97%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSH 124
           L KIDSEGKARKVVGCSCVVVKDYGEE+EGLN+VQEY+KSH
Sbjct: 100 LCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQEYVKSH 140


>tr|A9NPA9|A9NPA9_PICSI 40S ribosomal protein S12 OS=Picea
           sitchensis PE=3 SV=1
          Length = 120

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 36/41 (87%), Positives = 40/41 (97%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSH 124
           L KIDSEGKARKVVGCSC+VVKDYGEETEGLNV+QEY+K+H
Sbjct: 80  LCKIDSEGKARKVVGCSCLVVKDYGEETEGLNVIQEYVKTH 120


>tr|Q6ZLP8|Q6ZLP8_ORYSJ 40S ribosomal protein S12 OS=Oryza sativa
           subsp. japonica GN=OJ1027_G06.23 PE=2 SV=1
          Length = 138

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 36/41 (87%), Positives = 40/41 (97%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSH 124
           L KIDSEGKARKVVGCSCVVVKDYGEE+EGLN+VQ+Y+KSH
Sbjct: 98  LCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQDYVKSH 138


>tr|B8B7B6|B8B7B6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24909 PE=4 SV=1
          Length = 138

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 36/41 (87%), Positives = 40/41 (97%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSH 124
           L KIDSEGKARKVVGCSCVVVKDYGEE+EGLN+VQ+Y+KSH
Sbjct: 98  LCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQDYVKSH 138


>tr|B6TCB8|B6TCB8_MAIZE 40S ribosomal protein S12 OS=Zea mays PE=2
           SV=1
          Length = 140

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 36/41 (87%), Positives = 40/41 (97%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSH 124
           L KIDSEGKARKVVGCSCVVVKDYGE++EGLN+VQEY+KSH
Sbjct: 100 LCKIDSEGKARKVVGCSCVVVKDYGEQSEGLNIVQEYVKSH 140


>tr|B8LNN0|B8LNN0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 141

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = +2

Query: 2   LRKIDSEGKARKVVGCSCVVVKDYGEETEGLNVVQEYLKSH 124
           L KIDSEGKARKVVGCSC VVKDYGEETEGLNV+QEY+K+H
Sbjct: 101 LCKIDSEGKARKVVGCSCFVVKDYGEETEGLNVIQEYVKTH 141