DK944444 |
Clone id |
YMU02A01NGRL0006_B10 |
Library |
YMU02 |
Length |
596 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_B10. 5' end sequence. |
Accession |
DK944444 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
GGACAGCCAAGTCCACCTCGTCACTAAGTCTCATTAAGCTCTGCAGCGATGAATCTACTC TTTTTCCTCAGAAGAATGGAGCCCTTGCTGCTCATCTCTCCATTTGTCATTGTGTAGTCT GGATTCTTCTGCAAGGTTAGCTCCCCGCCATCGCTATGGCCAAGACCAAATCTTCCAAGA AGAACGTCGACAGCTACACCATTAAAAGCACCAGCAAGGTTGTGAAAGTTGGGGACACTG TGCTCATGCGTAATCAGGAGCCGCTGAAGCCGCCATATGTGGCCAGGGTAGAAAAGTTGT GGGCAGACGGACGGAATAATGTGAAAGTTGATGTCCGTTGGTACTATAGACCAGAGGAAT CTATCGGAGGTCGCCGACAGTTTCATGGTGCTAAAGAAGTGTTTCTCTCTGATCATACAG ATACACAGAGTGCTGATACGATTGAAGGTACATGCACTGTGCATACTTTCAAAAGCTACA CCAAGCTTGAAAATGTAGACTCCGATGACTATNTCTGCCGGTTCGAATACAAGGCTTCTA CTGGAGCTTTTACACCAGACAGAGTAGCAGTGTACTGCAAATGTGAGATGCCATAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3UHR0 |
Definition |
sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus |
Align length |
127 |
Score (bit) |
65.1 |
E-value |
3.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944444|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_B10, 5' (596 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing prot... 65 3e-10 sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing prot... 65 3e-10 sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaste... 64 4e-10 sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM... 61 5e-09 sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1... 59 1e-08 sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1... 59 1e-08 sp|Q497V6|BAHD1_MOUSE Bromo adjacent homology domain-containing ... 58 3e-08 sp|Q8TBE0|BAHD1_HUMAN Bromo adjacent homology domain-containing ... 58 3e-08 sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 pr... 54 5e-07 sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 pr... 54 5e-07 sp|P53236|RSC1_YEAST Chromatin structure-remodeling complex subu... 54 6e-07 sp|Q06488|RSC2_YEAST Chromatin structure-remodeling complex subu... 50 9e-06 sp|O74964|RSC1_SCHPO Chromatin structure-remodeling complex subu... 44 6e-04 sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI ... 43 0.001 sp|Q10077|SNT2_SCHPO Lid2 complex component snt2 OS=Schizosaccha... 41 0.005 sp|Q92072|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Ga... 39 0.026 sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bo... 38 0.044 sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Ho... 37 0.098 sp|Q9Z330|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Ratt... 35 0.29 sp|Q99MY8|ASH1L_MOUSE Probable histone-lysine N-methyltransferas... 35 0.37 sp|Q9NR48|ASH1L_HUMAN Probable histone-lysine N-methyltransferas... 35 0.37 sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mu... 34 0.64 sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=... 33 1.1 sp|O44757|LIN59_CAEEL Probable histone-lysine N-methyltransferas... 32 1.9 sp|Q8MVR1|GBPC_DICDI Cyclic GMP-binding protein C OS=Dictyosteli... 32 1.9 sp|Q62901|RERE_RAT Arginine-glutamic acid dipeptide repeats prot... 32 3.2 sp|Q80TZ9|RERE_MOUSE Arginine-glutamic acid dipeptide repeats pr... 32 3.2 sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats pr... 32 3.2 sp|Q11XT5|HEM3_CYTH3 Porphobilinogen deaminase OS=Cytophaga hutc... 32 3.2 sp|Q8R016|BLMH_MOUSE Bleomycin hydrolase OS=Mus musculus GN=Blmh... 32 3.2
>sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Bahcc1 PE=2 SV=2 Length = 2643
Score = 65.1 bits (157), Expect = 3e-10 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Frame = +3
Query: 216 KVVKVGDTVLMRNQEPLKPPYVARVEKLWADGRNNVKVDVRWYYRPEESIGGRRQFHGAK 395 + +++GD + + PY+ R+E LW +N+ V V+W+Y PEE+ G+RQ G Sbjct: 2517 ETLRIGDCAVFLSAGRPNLPYIGRIESLWESWGSNMVVKVKWFYHPEETKLGKRQSDGKN 2576
Query: 396 EVFLSDHTDTQSADTIEGTCTVHTFKSYTKL----ENVDSDD-YXCRFEYKASTGAF-TP 557 ++ S H D TI C V + Y ++ + D D Y Y +TG T Sbjct: 2577 ALYQSCHEDENDVQTISHKCQVVGREQYEQMMRGRKYQDQQDLYYLAGTYDPTTGRLVTA 2636
Query: 558 DRVAVYC 578 D V V C Sbjct: 2637 DGVPVLC 2643
>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=BAHCC1 PE=1 SV=3 Length = 2608
Score = 64.7 bits (156), Expect = 3e-10 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Frame = +3
Query: 216 KVVKVGDTVLMRNQEPLKPPYVARVEKLWADGRNNVKVDVRWYYRPEESIGGRRQFHGAK 395 + ++VGD + + PY+ R+E +W +N+ V V+W+Y PEE+ G+RQ G Sbjct: 2482 ETLRVGDCAVFLSAGRPNLPYIGRIESMWESWGSNMVVKVKWFYHPEETKLGKRQCDGKN 2541
Query: 396 EVFLSDHTDTQSADTIEGTCTVHTFKSYTKLENV-----DSDDYXCRFEYKASTGAF-TP 557 ++ S H D TI C V + Y ++ D Y Y +TG T Sbjct: 2542 ALYQSCHEDENDVQTISHKCQVVAREQYEQMARSRKCQDRQDLYYLAGTYDPTTGRLVTA 2601
Query: 558 DRVAVYC 578 D V + C Sbjct: 2602 DGVPILC 2608
>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1 Length = 1658
Score = 64.3 bits (155), Expect = 4e-10 Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Frame = +3
Query: 198 TIKSTSKVVKVGDTVLMRNQEPLKPPYVARVEKLWADGRNNVKVDVRWYYRPEESIG-GR 374 TIK + + VGD+ + + PY+ R+E +W N V V W+Y PEE+ G + Sbjct: 1504 TIKRGKETITVGDSAVFLSTGRPDRPYIGRIESMWETTTGNKVVRVAWFYHPEETTGCPK 1563
Query: 375 RQFHGAKEVFLSDHTDTQSADTIEGTCTVHTFKSYTKLENVDSDDY 512 +F GA +F S H D TI C V F SY + DS Y Sbjct: 1564 LKFPGA--LFESPHEDENDVQTISHRCEVLQFGSYFEKFGADSKQY 1607
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1 Length = 1633
Score = 60.8 bits (146), Expect = 5e-09 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Frame = +3
Query: 228 VGDTVLMRNQEPLKPPYVARVEKLWADGRNNVKVDVRWYYRPEESIGGRRQFHGAKEVFL 407 VGD V + E P++ +E+LW D + W+YRP E+ + KEVF Sbjct: 958 VGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFK 1017
Query: 408 SDHTDTQSADTIEGTCTVHTFKSYTKL--ENV-DSDDYXCRFEYKASTGAF 551 SD+ + I G C V K Y KL EN D D Y C Y A T +F Sbjct: 1018 SDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSF 1068
Score = 44.3 bits (103), Expect = 5e-04 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Frame = +3
Query: 222 VKVGDTVLMRNQEPLKPPYVARVEKLWA-DGRNNVKVDVRWYYRPEESIGGRRQFHGAKE 398 +KVGD V +++ ++P V R+EK+W DG + + PEE+ + KE Sbjct: 1157 LKVGDCVFIKSHGLVRPR-VGRIEKMWVRDGAAYFFGPI--FIHPEETEHEPTKMFYKKE 1213
Query: 399 VFLSDHTDTQSADTIEGTCTVHTFKSY---TKLENVDSDDYXCRFEYKAS 539 VFLS+ +T I G C V +FK + E ++D + C Y S Sbjct: 1214 VFLSNLEETCPMSCILGKCAVLSFKDFLCCRPTEISENDVFLCESRYNES 1263
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=3 Length = 1634
Score = 59.3 bits (142), Expect = 1e-08 Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Frame = +3
Query: 228 VGDTVLMRNQEPLKPPYVARVEKLWADGRNNVKVDVRWYYRPEESIGGRRQFHGAKEVFL 407 VGD V + E P++ +E+LW D + W+YRP E+ + KEVF Sbjct: 960 VGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFK 1019
Query: 408 SDHTDTQSADTIEGTCTVHTFKSYTKL--ENV-DSDDYXCRFEYKASTGAF 551 SD+ + I G C V K Y KL EN D D + C Y A T +F Sbjct: 1020 SDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSF 1070
Score = 43.1 bits (100), Expect = 0.001 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 4/110 (3%) Frame = +3
Query: 222 VKVGDTVLMRNQEPLKPPYVARVEKLWA-DGRNNVKVDVRWYYRPEESIGGRRQFHGAKE 398 +KVGD V +++ ++P V R+EK+W DG + + PEE+ + KE Sbjct: 1158 LKVGDCVFIKSHGLVRPR-VGRIEKVWVRDGAAYFYGPI--FIHPEETEHEPTKMFYKKE 1214
Query: 399 VFLSDHTDTQSADTIEGTCTVHTFKSYTK---LENVDSDDYXCRFEYKAS 539 VFLS+ +T I G C V +FK + E ++D C Y S Sbjct: 1215 VFLSNLEETCPMSCILGKCAVLSFKDFLSCRPTEIPENDILLCESRYNES 1264
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1 Length = 1689
Score = 59.3 bits (142), Expect = 1e-08 Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Frame = +3
Query: 228 VGDTVLMRNQEPLKPPYVARVEKLWADGRNNVKVDVRWYYRPEESIGGRRQFHGAKEVFL 407 VGD V + E P++ +E+LW D + W+YRP E+ + KEVF Sbjct: 960 VGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEVFK 1019
Query: 408 SDHTDTQSADTIEGTCTVHTFKSYTKL--ENV-DSDDYXCRFEYKASTGAF 551 SD+ + I G C V K Y KL EN D D + C Y A T +F Sbjct: 1020 SDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSF 1070
Score = 42.7 bits (99), Expect = 0.001 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 4/110 (3%) Frame = +3
Query: 222 VKVGDTVLMRNQEPLKPPYVARVEKLWA-DGRNNVKVDVRWYYRPEESIGGRRQFHGAKE 398 +KVGD V +++ ++P V R+EK+W DG + + PEE+ + KE Sbjct: 1158 LKVGDCVFIKSHGLVRPR-VGRIEKVWVRDGAAYFYGPI--FIHPEETEHEPTKMFYKKE 1214
Query: 399 VFLSDHTDTQSADTIEGTCTVHTFKSYTK---LENVDSDDYXCRFEYKAS 539 VFLS+ +T I G C V +FK + E ++D C Y S Sbjct: 1215 VFLSNLEETCPMTCILGKCAVLSFKDFLSCRPTEIPENDILLCESRYNES 1264
>sp|Q497V6|BAHD1_MOUSE Bromo adjacent homology domain-containing 1 protein OS=Mus musculus GN=Bahd1 PE=2 SV=1 Length = 772
Score = 58.2 bits (139), Expect = 3e-08 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%) Frame = +3
Query: 201 IKSTSKVVKVGDTVLMRN-QEPLKPPYVARVEKLWADGRNN-VKVDVRWYYRPEESIGGR 374 ++ + ++V DTVL+++ PYVA++ LW + + + + + WYYRPE GGR Sbjct: 611 VERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEHLQGGR 670
Query: 375 R-QFHGA--KEVFLSDHTDTQSADTIEGTCTVHTFKSYTK 485 H EVF S H D S IE C V TF Y + Sbjct: 671 SPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCR 710
>sp|Q8TBE0|BAHD1_HUMAN Bromo adjacent homology domain-containing 1 protein OS=Homo sapiens GN=BAHD1 PE=1 SV=2 Length = 780
Score = 58.2 bits (139), Expect = 3e-08 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%) Frame = +3
Query: 201 IKSTSKVVKVGDTVLMRN-QEPLKPPYVARVEKLWADGRNN-VKVDVRWYYRPEESIGGR 374 ++ + ++V DTVL+++ PYVA++ LW + + + + + WYYRPE GGR Sbjct: 619 VERHGETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEHLQGGR 678
Query: 375 R-QFHGA--KEVFLSDHTDTQSADTIEGTCTVHTFKSYTK 485 H EVF S H D S IE C V TF Y + Sbjct: 679 SPSMHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCR 718
>sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 protein OS=Mus musculus GN=Tnrc18 PE=1 SV=2 Length = 2878
Score = 54.3 bits (129), Expect = 5e-07 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 32/153 (20%) Frame = +3
Query: 216 KVVKVGDTVLMRNQEPLKPPYVARVEKLWADGRNNVKVDVRWYYRPEESIGGRRQFHGA- 392 +++++GD + + PY+ R++ +W NN+ V V+W+Y PEE+ G +QFH Sbjct: 2727 EMIRIGDCAVFLSAGRPNLPYIGRIQSMWESWGNNMVVRVKWFYHPEETSPG-KQFHEGQ 2785
Query: 393 -------------------------KEVFLSDHTDTQSADTIEGTCTVHTFKSYTKL--- 488 + ++ S H D T+ C V + Y ++ Sbjct: 2786 HWDQKSGHSLPAALRASSQRKDFMERALYQSSHVDENDVQTVSHKCLVVGLEQYEQMLKT 2845
Query: 489 -ENVDSDD-YXCRFEYKASTG-AFTPDRVAVYC 578 + DS+ Y Y+ +TG F+ D V V C Sbjct: 2846 KKYQDSEGLYYLAGTYEPTTGMIFSTDGVPVLC 2878
>sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 protein OS=Homo sapiens GN=TNRC18 PE=1 SV=3 Length = 2968
Score = 54.3 bits (129), Expect = 5e-07 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 32/153 (20%) Frame = +3
Query: 216 KVVKVGDTVLMRNQEPLKPPYVARVEKLWADGRNNVKVDVRWYYRPEESIGGRRQFHGA- 392 +++++GD + + PY+ R++ +W NN+ V V+W+Y PEE+ G +QFH Sbjct: 2817 EMIRIGDCAVFLSAGRPNLPYIGRIQSMWESWGNNMVVRVKWFYHPEETSPG-KQFHQGQ 2875
Query: 393 -------------------------KEVFLSDHTDTQSADTIEGTCTVHTFKSYTKL--- 488 + ++ S H D T+ C V + Y ++ Sbjct: 2876 HWDQKSSRSLPAALRVSSQRKDFMERALYQSSHVDENDVQTVSHKCLVVGLEQYEQMLKT 2935
Query: 489 -ENVDSDD-YXCRFEYKASTG-AFTPDRVAVYC 578 + DS+ Y Y+ +TG F+ D V V C Sbjct: 2936 KKYQDSEGLYYLAGTYEPTTGMIFSTDGVPVLC 2968
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TRM7 |
Definition |
tr|A9TRM7|A9TRM7_PHYPA BAH-PHD domain-containing protein OS=Physcomitrella patens subsp. patens |
Align length |
149 |
Score (bit) |
250.0 |
E-value |
4.0e-65 |
Report |
|