DK944455 [AcEST]

DK944455
Clone id	YMU02A01NGRL0006_B24
Library	YMU02
Length	250
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_B24. 5' end sequence.
Accession	DK944455
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL129Contig1
Sequence	GTCAAGTAGTTGTCTTACATTTCTGAGTGGTTAGCATAATTTTTTGCTTCCCTGAGGCCT TTGCGGGAATGTGCCTTATAGTTCAAATGCTTATATAGTCAAAGGCCATGCTCAGAATAC AGCTGTGCCAAAGCCACGTAAATTGAGCTAAATTATTGTCGAGGTTCTTTTATTGAAAGT AAGTAGAATAAGATGCTCTGGGAGGCATTTGGTCTTGTTTAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q5U367
Definition	sp\|Q5U367\|PLOD3_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Rattus norvegicus
Align length	27
Score (bit)	28.9
E-value	8.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK944455\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_B24, 5' (220 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q5U367\|PLOD3_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygen... 29 8.2 sp\|Q9R0E1\|PLOD3_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxyg... 29 8.2 >sp\|Q5U367\|PLOD3_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Rattus norvegicus GN=Plod3 PE=2 SV=1 Length = 741 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +2 Query: 68 NVPYSSNAYIVKGHAQNTAVPKPRKLS 148 NVPY S AY+++G T +P+ S Sbjct: 460 NVPYISQAYVIRGETLRTELPEKEVFS 486 >sp\|Q9R0E1\|PLOD3_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS=Mus musculus GN=Plod3 PE=2 SV=1 Length = 741 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +2 Query: 68 NVPYSSNAYIVKGHAQNTAVPKPRKLS 148 NVPY S AY+++G T +P+ S Sbjct: 460 NVPYISQAYVIRGETLRTELPQKEVFS 486
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK944455\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_B24, 5' (220 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done *** No hits found ****