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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944461
Clone id YMU02A01NGRL0006_C06
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_C06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGGGGATGCTCTGTGCGCATTGAATGCCTCATGGGAGAGTCCTTTTCAACGCGTACAGC
TTTTTGCGCCTACTGTGTTGCTCACAACCTACTGAGAACTTGCCAATTGGTGCTGCGAAC
AGTAGTGTGTGCTTGTATAAGAGGAGGTGGTCGCCTCTTTCTCTCTCCATCTAAGTCTGC
CTCTTTGTCTCCATTTGAATGCGTGAGAGCATCTTGAGTGTCACTGTTGATGGCTTGCAA
CCGGGACAATTGTTGTTCGTGTGCTGGCAAAGCGGAAGAATTGTGCATCAGCAATGGTGA
TTCTCTCGGAGCTGAGAGCATGGACTTCGAAGGGGGTGAGCTCCATTGAAGGTTTTCTTT
TATTTGATGCTTTGTAAACCTATTCCGGCGAAGTATTCGAGCATCTCTGTGTCGAAATTG
CGGATCTGATGTGCTTCATTCCTAGCAAGAAACGATATAATATCTGTATCGTTGATGTAA
TTTTTGGTGCTATGATGTTGGTTTGAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8CIN9
Definition sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus norvegicus
Align length 65
Score (bit) 31.6
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944461|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_C06, 5'
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Ratt...    32   2.2  
sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82 GN=n...    31   2.9  
sp|P58069|RASA2_MOUSE Ras GTPase-activating protein 2 OS=Mus mus...    31   3.9  
sp|O94150|RT09_CANAL 40S ribosomal protein S9, mitochondrial OS=...    30   5.0  
sp|Q47270|NINE_ECOLI Protein ninE homolog from lambdoid prophage...    30   5.0  
sp|Q63713|RASA2_RAT Ras GTPase-activating protein 2 OS=Rattus no...    30   5.0  
sp|Q6AJY9|PNP_DESPS Polyribonucleotide nucleotidyltransferase OS...    30   6.5  
sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=A...    30   6.6  
sp|Q09M02|CBPC5_MOUSE Cytosolic carboxypeptidase-like protein 5 ...    30   8.5  
sp|A4R6X5|RT106_MAGGR Histone chaperone RTT106 OS=Magnaporthe gr...    30   8.6  
sp|Q4R2Z8|ZN541_MACFA Zinc finger protein 541 (Fragment) OS=Maca...    27   9.5  

>sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus
           norvegicus GN=Rffl PE=1 SV=1
          Length = 362

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 336 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGERK 157
           P  ++ L+ P+ S +    S  LP+   Q++ + A + +TQ A+ H + D E  +  E  
Sbjct: 156 PEQQAFLTQPQSSTV-PPTSPGLPSSPAQVTSVLAQDQETQQAIGHVSQDHEEPIFLEST 214

Query: 156 RRPPP 142
            R PP
Sbjct: 215 ARVPP 219


>sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82 GN=ninE
           PE=3 SV=1
          Length = 56

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 379 VYKASNKRKPSMELTPFEVHALSSERITIADAQFFRFASTR 257
           +YK  N+RK   EL P E+  L     ++ D ++ R A+ R
Sbjct: 13  IYKVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARR 53


>sp|P58069|RASA2_MOUSE Ras GTPase-activating protein 2 OS=Mus
           musculus GN=Rasa2 PE=1 SV=1
          Length = 848

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 269 CQHTNNNCPGCKPSTVTLKMLSRIQMETKRQT 174
           CQ T+ + PGCKP T  +    +I ++  R+T
Sbjct: 727 CQETSESTPGCKPCTAGIPADIQIDIDEDRET 758


>sp|O94150|RT09_CANAL 40S ribosomal protein S9, mitochondrial
           OS=Candida albicans GN=MRPS9 PE=2 SV=1
          Length = 336

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = -2

Query: 432 TSDPQFRHRDARILR-----RNRFTKHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSAL 268
           T+ P+F+ R  R  +     R+ +T  Q+ ENL          ++  R  P LM      
Sbjct: 51  TTKPRFQSRFRRNQQPHQQQRSPYTSSQVTENLNIGE------INRVRTVPTLMTYYGGN 104

Query: 267 PAHEQQLSRLQAINSDTQDALTHSNGDKE 181
           P HE  ++RL+A+    Q        D+E
Sbjct: 105 PVHEDNMNRLRAVLKKYQQLPVRVVPDRE 133


>sp|Q47270|NINE_ECOLI Protein ninE homolog from lambdoid prophage
           DLP12 OS=Escherichia coli (strain K12) GN=ninE PE=3 SV=1
          Length = 56

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 379 VYKASNKRKPSMELTPFEVHALSSERITIADAQFFRFASTRT 254
           +Y+  N+RK   EL P E+  L     ++ D ++ R A+ R+
Sbjct: 13  IYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRS 54


>sp|Q63713|RASA2_RAT Ras GTPase-activating protein 2 OS=Rattus
           norvegicus GN=Rasa2 PE=2 SV=1
          Length = 847

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 269 CQHTNNNCPGCKPSTVTLKMLSRIQMETKRQT 174
           CQ T+   PGCKP T  +    +I ++  R+T
Sbjct: 726 CQETSEGTPGCKPCTAGIPADIQIDIDEDRET 757


>sp|Q6AJY9|PNP_DESPS Polyribonucleotide nucleotidyltransferase
           OS=Desulfotalea psychrophila GN=pnp PE=3 SV=1
          Length = 692

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +2

Query: 146 GGRLFLSPSKSASLSPFECVRAS*VSLLMACNRDNCCSCAGKAEELCISNGDSLGAESMD 325
           GGR+     K      F  + +S + L++AC R+      GKA+EL  S  + LGA    
Sbjct: 150 GGRIAYIDGKYVLNPTFAELESSSMDLMVACTRNAIVMVEGKADEL--SEDEILGAIFFA 207

Query: 326 FE 331
           FE
Sbjct: 208 FE 209


>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680
           OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
          Length = 390

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -3

Query: 314 QLRE---NHHC*CTILPLCQHTNNNCPGCK 234
           +LRE   NHH  CT +    H N+ CP CK
Sbjct: 350 ELRELPCNHHFHCTCIDKWLHINSRCPLCK 379


>sp|Q09M02|CBPC5_MOUSE Cytosolic carboxypeptidase-like protein 5
           OS=Mus musculus GN=Agbl5 PE=2 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -2

Query: 345 WSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDG 166
           +S+  S    S+ +++   M NS + P H  + + L  + S TQ       G        
Sbjct: 671 FSTGTSTGGSSSSQQNSPQMKNSPSFPFHGSRTAGLPGLGSSTQKVSHRVLGPVREPRCS 730

Query: 165 ERKRRPPPLIQAHTT 121
           +R+RR  PL    TT
Sbjct: 731 DRRRRQQPLNHRSTT 745


>sp|A4R6X5|RT106_MAGGR Histone chaperone RTT106 OS=Magnaporthe
           grisea GN=RTT106 PE=3 SV=1
          Length = 468

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 399 EHLCVEIADLMCFIPSKKRYNICI 470
           E L +EI D+   IP +K+YN+C+
Sbjct: 92  EELQLEIKDISVSIPQRKKYNLCL 115
tr_hit_id B0CPT8
Definition tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 120
Score (bit) 40.4
E-value 0.051
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944461|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_C06, 5'
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor (st...    40   0.051
tr|B0CW92|B0CW92_LACBS Predicted protein OS=Laccaria bicolor (st...    38   0.25 
tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein OS=Trypa...    37   0.74 
tr|A2DSH1|A2DSH1_TRIVA Putative uncharacterized protein OS=Trich...    37   0.74 
tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein OS=Trypa...    35   1.6  
tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory trans...    35   2.8  
tr|Q8LIH0|Q8LIH0_ORYSJ Centromere protein-like (Putative unchara...    34   3.7  
tr|Q0D3H6|Q0D3H6_ORYSJ Os07g0686400 protein OS=Oryza sativa subs...    34   3.7  
tr|O17969|O17969_CAEEL Protein M02G9.2, partially confirmed by t...    34   3.7  
tr|B8M6I9|B8M6I9_9EURO Putative uncharacterized protein OS=Talar...    34   3.7  
tr|A4HBI2|A4HBI2_LEIBR Putative uncharacterized protein OS=Leish...    34   4.8  
tr|B6QUH3|B6QUH3_PENMA BZIP transcription factor, putative OS=Pe...    34   4.8  
tr|A2R8I4|A2R8I4_ASPNC Contig An16c0230, complete genome OS=Aspe...    34   4.8  
tr|Q10DW0|Q10DW0_ORYSJ Os03g0717900 protein OS=Oryza sativa subs...    33   6.2  
tr|A3AM41|A3AM41_ORYSJ Putative uncharacterized protein OS=Oryza...    33   6.2  
tr|A2XLF0|A2XLF0_ORYSI Putative uncharacterized protein OS=Oryza...    33   6.2  
tr|Q4CL20|Q4CL20_TRYCR Putative uncharacterized protein OS=Trypa...    33   6.2  
tr|Q6H593|Q6H593_ORYSJ Os09g0386200 protein OS=Oryza sativa subs...    33   8.0  
tr|B8BF24|B8BF24_ORYSI Putative uncharacterized protein OS=Oryza...    33   8.0  
tr|Q9ESU4|Q9ESU4_MOUSE IA4 OS=Mus musculus GN=Pcsk1n PE=2 SV=1         33   8.1  
tr|A9RSV2|A9RSV2_PHYPA Predicted protein OS=Physcomitrella paten...    33   8.1  
tr|Q55DD7|Q55DD7_DICDI Putative uncharacterized protein OS=Dicty...    33   8.1  
tr|B6KMK8|B6KMK8_TOXGO Putative uncharacterized protein OS=Toxop...    33   8.1  
tr|B3KVU5|B3KVU5_HUMAN cDNA FLJ41463 fis, clone BRSTN2017237 OS=...    33   8.1  

>tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_186956 PE=4 SV=1
          Length = 940

 Score = 40.4 bits (93), Expect = 0.051
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
 Frame = -2

Query: 372 KHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLS----RLQAINSDTQDAL 205
           +H +   LQ  +    ++ S   +  LL +    +P    ++S    RL   + DT+D  
Sbjct: 557 RHVLDSELQQRACEFFALASRSDDDELLQNICEEMPPFPPRVSALLGRLNRKHGDTEDKR 616

Query: 204 THSNGDKEADLDGERKRRPPPLIQAHTTVRSTNWQVLSRL*ATQ*AQKAVRVEKDSPMRH 25
           T  +G KEA+LD E  +R   L++ + T  S N  ++  L     +  +++    SP  +
Sbjct: 617 TWIHGGKEANLDREATKRKTFLVENNGTASSDNQGIMDSLAGLDMSSPSIQAIGSSPQEY 676


>tr|B0CW92|B0CW92_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_322427 PE=4 SV=1
          Length = 194

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
 Frame = -3

Query: 431 HQIRNFDTEMLEYFAGIGLQSIK*KKTFNGAH---PLRSPCSQLRENHHC*C-TILPLCQ 264
           H++R  + E L  F        + K+  N AH   PLR   SQ    HH  C T +    
Sbjct: 79  HRLRRQEGEALFGFKA----KARDKQLVNNAHRRNPLRHKASQAPLPHHAMCETSMNRSD 134

Query: 263 HTNNNCPGCKPSTVTLKMLSRIQMETKRQT*MERERGDHLLLYKHTLLFAAPIGKFSVGC 84
               NC GC      L  L R    + RQT +  E G H+L  +     ++P G  S G 
Sbjct: 135 RRERNCCGC----ARLLGLPR----SPRQTLVNPEEGSHILWRREHYAGSSPFGLTSSGH 186

Query: 83  EQHSRR 66
             H  R
Sbjct: 187 RTHFTR 192


>tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053506559.250 PE=4 SV=1
          Length = 1559

 Score = 36.6 bits (83), Expect = 0.74
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 336  PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINS-DTQDALTHSNGDKEADLDGER 160
            PPS S+ S PR SP L  +SS+ PA ++    LQAI++ D+ D      GD  +    E 
Sbjct: 1179 PPSSSLASPPRSSPSLFSSSSS-PATDKHRRVLQAISTVDSSDVAALEKGDDSSPQAQEE 1237

Query: 159  KRRPPP 142
                 P
Sbjct: 1238 TAEQEP 1243


>tr|A2DSH1|A2DSH1_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_067550 PE=4 SV=1
          Length = 398

 Score = 36.6 bits (83), Expect = 0.74
 Identities = 27/91 (29%), Positives = 41/91 (45%)
 Frame = -2

Query: 387 RNRFTKHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDA 208
           R    + QI        P S S  S+PR+S    H SSA P++ + L      N D  D 
Sbjct: 57  REETYEEQIAVPTSDEEPSSNSTPSSPRKSSA-KHRSSARPSNAKPLISDSKDNDDESD- 114

Query: 207 LTHSNGDKEADLDGERKRRPPPLIQAHTTVR 115
            + S+ DK     G  KR+P  +++  T ++
Sbjct: 115 -SESSEDKSRPKTGGGKRKPKKIVKKTTVIK 144


>tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein
            OS=Trypanosoma brucei GN=Tb11.01.8390 PE=4 SV=1
          Length = 2135

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 321  MLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSNGDKEADLDGE 163
            +LS P  SP L+ N   LPA     SRL  ++    +A + ++GD E + +GE
Sbjct: 1038 ILSNPASSPQLLLNMCKLPAPAYMGSRLPLLSMPVHNARSDTSGDVEGETNGE 1090


>tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory
           transducer OS=Rhodopseudomonas palustris (strain BisA53)
           GN=RPE_1941 PE=3 SV=1
          Length = 568

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -2

Query: 336 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRL 238
           PP + ++ A  E+ L +HN S LPAH Q+L++L
Sbjct: 63  PPPEYVIEAFLEATLALHNPSNLPAHRQRLAKL 95


>tr|Q8LIH0|Q8LIH0_ORYSJ Centromere protein-like (Putative
           uncharacterized protein) OS=Oryza sativa subsp. japonica
           GN=OJ1200_C08.114 PE=4 SV=1
          Length = 860

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = -2

Query: 366 QIKENLQWSSPPSKSML-----SAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALT 202
           Q++ ++ +SSP   S L     S   + P  + N S  P H  + +RL  + +  +    
Sbjct: 73  QLRRSMSFSSPAGNSFLKDRSFSFSGDVPSSLFNESDAPDHVAKSTRLTNLLNKNEVLDR 132

Query: 201 HSNGDKEADLDGERKRRPPP 142
           + +G++EA + GER+++  P
Sbjct: 133 YIDGEQEATILGERQKQNSP 152


>tr|Q0D3H6|Q0D3H6_ORYSJ Os07g0686400 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0686400 PE=4 SV=1
          Length = 926

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = -2

Query: 366 QIKENLQWSSPPSKSML-----SAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALT 202
           Q++ ++ +SSP   S L     S   + P  + N S  P H  + +RL  + +  +    
Sbjct: 139 QLRRSMSFSSPAGNSFLKDRSFSFSGDVPSSLFNESDAPDHVAKSTRLTNLLNKNEVLDR 198

Query: 201 HSNGDKEADLDGERKRRPPP 142
           + +G++EA + GER+++  P
Sbjct: 199 YIDGEQEATILGERQKQNSP 218


>tr|O17969|O17969_CAEEL Protein M02G9.2, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=M02G9.2
           PE=2 SV=3
          Length = 398

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
 Frame = +2

Query: 128 CACIRGGGR-LFLSPSKSASLSPFECVRAS*VSLLMACNRDN----CCS-CAGKAEELCI 289
           C C  G  R +   PS  A   P+ CV     S L +CNR N    C S C+   E  C 
Sbjct: 65  CVCTEGNVRNIITGPSLPALFKPYNCVSTCESSCLESCNRLNFNMKCSSVCSEACEFTCA 124

Query: 290 SNGDS 304
             G S
Sbjct: 125 KQGTS 129


>tr|B8M6I9|B8M6I9_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_027460 PE=4
           SV=1
          Length = 266

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = -2

Query: 372 KHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSN 193
           K +++E+L   SPP+ S L++P  + ++ H      AHE  LSR     +  +D     N
Sbjct: 27  KEKMEESLD--SPPTGSPLTSPIVTIVVGHERRLFAAHEDVLSRSAFFEAALKDQFLEPN 84

Query: 192 GDKEADLDGE 163
           G K+ DL  E
Sbjct: 85  G-KKVDLPDE 93