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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944475
Clone id YMU02A01NGRL0006_C23
Library
Length 585
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_C23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTCACAGAACTCCCTCACGTTCCTTTGCTTCGAAACGAGGGTAGGCACACCAGACACAA
AATTGAGTGATGCGTAATACGGACGGAGGTTCGAATCCTCGCAAGGCGTCCGGAACAAAA
GTCGTCTTGCATTTCCGGAATAAGTCTCCCGACCCCTTGCTTTCCACCAAGAGAAAGCAA
AAAGAACCCGGGCGGGAAAGTTTGATTTGGTCAATCTCCTCGCCCCTCCGAACTAAGTGG
CGACGAAACCGATCTTCGTATCGAGATGCGGGTGGGTCCTGTTGCTTCGGTGTCCCCCGA
AGCTAAATCTATCAAAAGAAAAGGAAATCCTTGGGAAATTTAATATTCCCTAGTACCAAT
CCGTAAAAATGGAATGTAAATCCTGGGATTGTTGACTACTAAGAGTCTCTCTTATCATTC
TATGGAGTTTCCATAGATAGGTAAGGTCGTAAGTCCCACCTTTTCTATTTTCCCCTCTCC
AAACCAAGGGTGGGGCGGCAAAGAAGATATTGGGTCTCGCCCCAATGCGGTACTCANAGA
ATAGTCTTACGGGATAGAGAAGAAGGAGGGGTAGGAAGTGGCGGC
■■Homology search results ■■ -
sp_hit_id Q46IR0
Definition sp|Q46IR0|RL4_PROMT 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain NATL2A)
Align length 113
Score (bit) 36.6
E-value 0.094
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944475|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_C23, 5'
         (585 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q46IR0|RL4_PROMT 50S ribosomal protein L4 OS=Prochlorococcus ...    37   0.094
sp|Q9ASY9|PM36_ARATH Seed maturation protein PM36 homolog OS=Ara...    33   1.4  
sp|A5GIU4|RL4_SYNPW 50S ribosomal protein L4 OS=Synechococcus sp...    32   1.8  
sp|Q7U4J9|RL4_SYNPX 50S ribosomal protein L4 OS=Synechococcus sp...    31   5.2  
sp|Q7V9W3|RL4_PROMA 50S ribosomal protein L4 OS=Prochlorococcus ...    31   5.2  
sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic ...    31   5.2  
sp|Q6A7M3|Y1495_PROAC UPF0090 protein PPA1495 OS=Propionibacteri...    30   6.7  
sp|Q3AMN1|RL4_SYNSC 50S ribosomal protein L4 OS=Synechococcus sp...    30   6.7  
sp|Q9WUJ3|MYOME_RAT Myomegalin OS=Rattus norvegicus GN=Pde4dip P...    30   6.7  
sp|A1DNV8|YD156_NEOFI WD repeat-containing protein NFIA_058290 O...    30   8.8  
sp|Q6C8W4|PLPL_YARLI Patatin-like phospholipase domain-containin...    30   8.8  

>sp|Q46IR0|RL4_PROMT 50S ribosomal protein L4 OS=Prochlorococcus
           marinus (strain NATL2A) GN=rplD PE=3 SV=1
          Length = 211

 Score = 36.6 bits (83), Expect = 0.094
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
 Frame = +2

Query: 8   ELPHVPLLRNEGRHTRHKIE*CVIRTEVRILARRPEQKSSCISGI--SLPTPCFPPRESK 181
           +L H  +LR +  H+R      + R+EVR   R+P ++         S+ TP        
Sbjct: 31  DLLHRAVLRQQA-HSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPL------- 82

Query: 182 KNPGGKV*FGQSPRPSELSGDETDLRIEMRVGPVASVSPEAKSIKRKGNPWEI 340
             PGG + FG  PR   L  +  + R+ +R   ++ + P+AK IK  G+  E+
Sbjct: 83  -RPGGGIIFGPKPRKYNLEMNRKERRLALRTALMSRI-PDAKIIKDFGSKLEV 133


>sp|Q9ASY9|PM36_ARATH Seed maturation protein PM36 homolog
           OS=Arabidopsis thaliana GN=At3g16990 PE=1 SV=2
          Length = 221

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 17/46 (36%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +2

Query: 236 SGDETDLRIEMRVGPVASVSPEAKSIKRKGNPWEI*YS-LVPIRKN 370
           SG+ +D+  E+ +G +AS++ E +  KR+G+ W++ +S +VP R N
Sbjct: 69  SGESSDM--EVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRAN 112


>sp|A5GIU4|RL4_SYNPW 50S ribosomal protein L4 OS=Synechococcus sp.
           (strain WH7803) GN=rplD PE=3 SV=1
          Length = 211

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = +2

Query: 8   ELPHVPLLRNEGRHTRHKIE*CVIRTEVRILARRPEQKSSCISGI--SLPTPCFPPRESK 181
           +L H  +LR +  HTR      + R+EVR   R+P ++         S+ TP        
Sbjct: 31  DLMHRAVLRQQA-HTRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPL------- 82

Query: 182 KNPGGKV*FGQSPRPSELSGDETDLRIEMRVGPVASV 292
             PGG + FG  PR   L+ +  + R+ +R   +A +
Sbjct: 83  -RPGGGIVFGPKPRSYNLAMNRKERRLALRTALMARI 118


>sp|Q7U4J9|RL4_SYNPX 50S ribosomal protein L4 OS=Synechococcus sp.
           (strain WH8102) GN=rplD PE=3 SV=1
          Length = 211

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +2

Query: 8   ELPHVPLLRNEGRHTRHKIE*CVIRTEVRILARRPEQKSSCISGI--SLPTPCFPPRESK 181
           +L H  +LR +  H R      + R+EVR   R+P ++         S+ TP        
Sbjct: 31  DLMHRAVLRQQA-HARQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPL------- 82

Query: 182 KNPGGKV*FGQSPRPSELSGDETDLRIEMRVGPVASV 292
             PGG + FG  PR   L+ +  + R+ +R   +A V
Sbjct: 83  -RPGGGIVFGPKPRTYNLAMNRKERRLALRTALMARV 118


>sp|Q7V9W3|RL4_PROMA 50S ribosomal protein L4 OS=Prochlorococcus
           marinus GN=rplD PE=3 SV=1
          Length = 211

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
 Frame = +2

Query: 8   ELPHVPLLRNEGRHTRHKIE*CVIRTEVRILARRPEQKSSCISGI--SLPTPCFPPRESK 181
           +L H  +LR +  H+R      + R EVR   R+P ++         S+ TP        
Sbjct: 31  DLMHRAVLRQQA-HSRQGTASTLTRAEVRGGGRKPYKQKGTGRARQGSIRTPL------- 82

Query: 182 KNPGGKV*FGQSPRPSELSGDETDLRIEMRVGPVA 286
             PGG + FG  PR   LS +  + R+ +R   +A
Sbjct: 83  -RPGGGIIFGPKPRQYNLSMNRKERRLALRTALMA 116


>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and
           nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2
          Length = 732

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 225 GRGD*PNQTFPPGFFLLSLGGKQGV----GRLIPEMQDDFCSGR 106
           GRG  PNQ  PP F  L +G  QG     G   P +Q  F  GR
Sbjct: 538 GRGVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGR 581


>sp|Q6A7M3|Y1495_PROAC UPF0090 protein PPA1495 OS=Propionibacterium
           acnes GN=PPA1495 PE=3 SV=1
          Length = 178

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 131 ISGISLPTPCFPPRESKKNPGGKV*FGQSPRPSELSGDETDLRIEMRVGPVASVSPEAKS 310
           +S   + TP   PR  ++N G  V F  +P   + SG+  D RI      V ++  EA++
Sbjct: 80  VSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGRIAEAGEEVVTLEVEAEN 139

Query: 311 IK 316
            K
Sbjct: 140 SK 141


>sp|Q3AMN1|RL4_SYNSC 50S ribosomal protein L4 OS=Synechococcus sp.
           (strain CC9605) GN=rplD PE=3 SV=1
          Length = 211

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +2

Query: 8   ELPHVPLLRNEGRHTRHKIE*CVIRTEVRILARRPEQKSSCISGI--SLPTPCFPPRESK 181
           +L H  +LR +  H R      + R+EVR   R+P ++         S+ TP        
Sbjct: 31  DLMHRAVLRQQA-HARQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPL------- 82

Query: 182 KNPGGKV*FGQSPRPSELSGDETDLRIEMRVGPVASV 292
             PGG + FG  PR   L+ +  + R+ +R   +A +
Sbjct: 83  -KPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARI 118


>sp|Q9WUJ3|MYOME_RAT Myomegalin OS=Rattus norvegicus GN=Pde4dip PE=1
            SV=1
          Length = 2324

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 134  SGISLPTPCFPPRE-SKKNPGGKV*FGQSPRPSELS 238
            S ISLPTP  PP+E S+  PG    F   P+P+ LS
Sbjct: 1656 SSISLPTPQNPPKEASQAQPGFH--FNSIPKPASLS 1689


>sp|A1DNV8|YD156_NEOFI WD repeat-containing protein NFIA_058290
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=NFIA_058290 PE=3 SV=1
          Length = 527

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 161 FPPRESKKNPGGKV*FGQSPRPSELSGDETDL---RIEMRVGPVASVSPEAK 307
           FPP+ ++ +PGG     + P P ++  ++ DL   R+  R+  +A+ S  AK
Sbjct: 38  FPPKSARSSPGGLTKPKKKPAPKKVKKEDEDLVPRRMSSRLRGLAADSEVAK 89
tr_hit_id Q7UIE7
Definition tr|Q7UIE7|Q7UIE7_RHOBA Putative uncharacterized protein OS=Rhodopirellula baltica
Align length 41
Score (bit) 36.2
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944475|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_C23, 5'
         (585 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7UIE7|Q7UIE7_RHOBA Putative uncharacterized protein OS=Rhodo...    36   1.4  
tr|A2C4Z8|A2C4Z8_PROM1 50S ribosomal protein L4 OS=Prochlorococc...    35   2.4  
tr|B8HLS9|B8HLS9_9CHRO Metallophosphoesterase OS=Cyanothece sp. ...    35   2.4  
tr|A1CQJ5|A1CQJ5_ASPCL Putative uncharacterized protein OS=Asper...    35   2.4  
tr|Q851X6|Q851X6_ORYSJ Putative uncharacterized protein OSJNBa00...    34   7.0  
tr|Q10AH3|Q10AH3_ORYSJ Os03g0852300 protein OS=Oryza sativa subs...    34   7.0  
tr|A3APU5|A3APU5_ORYSJ Putative uncharacterized protein OS=Oryza...    34   7.0  

>tr|Q7UIE7|Q7UIE7_RHOBA Putative uncharacterized protein
           OS=Rhodopirellula baltica GN=RB12581 PE=4 SV=1
          Length = 174

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 127 LHFRNKSPDPLLSTKRKQKEPGRESLIWSISSPLRTKWRRN 249
           L  RN+SP+PLL T  + K   R  + W+  + +R  WR +
Sbjct: 133 LDARNRSPNPLLKTSWRMKANSRSRITWTPKTKIRDGWRNS 173


>tr|A2C4Z8|A2C4Z8_PROM1 50S ribosomal protein L4 OS=Prochlorococcus
           marinus (strain NATL1A) GN=rplD PE=4 SV=1
          Length = 212

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
 Frame = +2

Query: 8   ELPHVPLLRNEGRHTRHKIE*CVIRTEVRILARRPEQKSSCISGI--SLPTPCFPPRESK 181
           +L H  +LR +  H+R      + R+EVR   R+P ++         S+ TP        
Sbjct: 32  DLLHRAVLRQQA-HSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPL------- 83

Query: 182 KNPGGKV*FGQSPRPSELSGDETDLRIEMRVGPVASVSPEAKSIKRKGNPWEI 340
             PGG + FG  PR   L  +  + R+ +R   ++ +S +AK IK  G+  E+
Sbjct: 84  -RPGGGIIFGPKPRKYNLEMNRKERRLALRTALMSRIS-DAKIIKDFGSKLEV 134


>tr|B8HLS9|B8HLS9_9CHRO Metallophosphoesterase OS=Cyanothece sp. PCC
           7425 GN=Cyan7425_1187 PE=4 SV=1
          Length = 243

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
 Frame = -3

Query: 229 GGARRLTKSNFPAR---VLFAFSWWKARGRETYSGNARRLLFRTPCEDSNLRPYYASLNF 59
           G    +  S FP +    L   SW  + GRET +G   R LF    E     PY+  L  
Sbjct: 66  GNHELMMLSAFPQQSEHTLHLLSWLSSGGRETIAGYTSRDLFLEHMEWMQTLPYFLDLGD 125

Query: 58  V----SGV-PTLVSKQRNVREFC 5
           +    +GV PTL   ++   EFC
Sbjct: 126 IWLVHAGVEPTLPLAEQTTEEFC 148


>tr|A1CQJ5|A1CQJ5_ASPCL Putative uncharacterized protein
           OS=Aspergillus clavatus GN=ACLA_026330 PE=4 SV=1
          Length = 577

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -3

Query: 523 GARPNIFFAAPPLVWRGENRKGGTYDLTYLWKLHRMIRETLSSQQSQDLHSIFTDWY*GI 344
           G+RP + FA  P+  +G N  G  Y L Y W+L   +  + +     D+  I+  W  G+
Sbjct: 168 GSRPQLLFAVLPIADKGANFSGKHYVLCYDWRLRTFLARSFNWLPG-DIRDIWAVWSEGL 226

Query: 343 ----LNFPRI 326
               +  PR+
Sbjct: 227 TVYTITIPRL 236


>tr|Q851X6|Q851X6_ORYSJ Putative uncharacterized protein
           OSJNBa0015N08.25 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0015N08.25 PE=4 SV=1
          Length = 289

 Score = 33.9 bits (76), Expect = 7.0
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +1

Query: 97  PRKASGTKVVLHFR----NKSPDPLLSTKRKQ--KEPGRESLIWSISSPLRTKWRRNRSS 258
           PRK  G K     R     + P P    K+K+  KEP RE      S+P+ T  ++N+ +
Sbjct: 89  PRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQ--QASAPMSTPSKKNKEA 146

Query: 259 YRDAGGS 279
            RD GG+
Sbjct: 147 KRDTGGA 153


>tr|Q10AH3|Q10AH3_ORYSJ Os03g0852300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0852300 PE=2 SV=1
          Length = 303

 Score = 33.9 bits (76), Expect = 7.0
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +1

Query: 97  PRKASGTKVVLHFR----NKSPDPLLSTKRKQ--KEPGRESLIWSISSPLRTKWRRNRSS 258
           PRK  G K     R     + P P    K+K+  KEP RE      S+P+ T  ++N+ +
Sbjct: 89  PRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQ--QASAPMSTPSKKNKEA 146

Query: 259 YRDAGGS 279
            RD GG+
Sbjct: 147 KRDTGGA 153


>tr|A3APU5|A3APU5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012817 PE=4 SV=1
          Length = 227

 Score = 33.9 bits (76), Expect = 7.0
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +1

Query: 97  PRKASGTKVVLHFR----NKSPDPLLSTKRKQ--KEPGRESLIWSISSPLRTKWRRNRSS 258
           PRK  G K     R     + P P    K+K+  KEP RE      S+P+ T  ++N+ +
Sbjct: 89  PRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQ--QASAPMSTPSKKNKEA 146

Query: 259 YRDAGGS 279
            RD GG+
Sbjct: 147 KRDTGGA 153