DK944480
Clone id YMU02A01NGRL0006_D07
Library
Length 270
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_D07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GTTTCTTGCAGGTGTTAGCAAGCCTTCAGAAGGAGCAACACAGAGCTTAGGGATAGAAGC
GGAAAGTTTTCTTGCGGGTGTGAGTAAGCGTGCGGAGGAGGCACCTGAAACTCTGTGAGG
AATAATCACCACTCTGAATTTCATGTCAGCTTCTTTGAGGTCTTTATTGTTGCTATGACA
GAGCGGGGTTGTATTTTGAACCTTTTTCTTGAGTAGCAAGGTATATCTTCAATCAAAGTA
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P20430
Definition sp|P20430|L_TACV RNA-directed RNA polymerase OS=Tacaribe virus
Align length 54
Score (bit) 32.0
E-value 0.99
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944480|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_D07, 5'
(241 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P20430|L_TACV RNA-directed RNA polymerase OS=Tacaribe virus G... 32 0.99
sp|A7HMQ2|FOLD_FERNB Bifunctional protein folD OS=Fervidobacteri... 30 2.9
sp|A0QSY5|FOLD_MYCS2 Bifunctional protein folD OS=Mycobacterium ... 30 4.9
sp|Q6RX33|FOLD_MYCFO Bifunctional protein folD OS=Mycobacterium ... 30 4.9
sp|A1A171|FOLD_BIFAA Bifunctional protein folD OS=Bifidobacteriu... 29 6.4
sp|Q07533|CYK3_YEAST Cytokinesis protein 3 OS=Saccharomyces cere... 29 6.4
sp|A4XBC7|FOLD2_SALTO Bifunctional protein folD 2 OS=Salinispora... 29 8.4

>sp|P20430|L_TACV RNA-directed RNA polymerase OS=Tacaribe virus GN=L
PE=1 SV=1
Length = 2210

Score = 32.0 bits (71), Expect = 0.99
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2

Query: 210 KKKVQNTTPLCHSNNKDLKEADMKFRVVIIPHRVSGASSARLLTPARKLSASIP 49
+K + + C S DLKEA ++ +VV + VSG+ + LL + A +P
Sbjct: 1966 RKMTYSFSVTCVSKVIDLKEASVELQVVDVTQSVSGSGGSHLLLDGVSMIAGLP 2019


>sp|A7HMQ2|FOLD_FERNB Bifunctional protein folD OS=Fervidobacterium
nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=folD
PE=3 SV=1
Length = 272

Score = 30.4 bits (67), Expect = 2.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2

Query: 219 LLLKKKVQNTTPLCHSNNKDLKEADMKFRVVII 121
LLL+K + T +CHS KD+ E +V++
Sbjct: 167 LLLQKGIDATVTICHSRTKDIAEITKNSDIVVV 199


>sp|A0QSY5|FOLD_MYCS2 Bifunctional protein folD OS=Mycobacterium
smegmatis GN=folD PE=3 SV=1
Length = 283

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = -2

Query: 219 LLLKKKVQNTT-PLCHSNNKDL----KEADMKFRVVIIPHRVS 106
LLL ++ +N T LCH+ +DL ++AD+ V +PH V+
Sbjct: 176 LLLTRRSENATVTLCHTGTRDLPALTRQADIIIAAVGVPHMVT 218


>sp|Q6RX33|FOLD_MYCFO Bifunctional protein folD OS=Mycobacterium
fortuitum GN=folD PE=3 SV=2
Length = 286

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = -2

Query: 219 LLLKKKVQNTT-PLCHSNNKDL----KEADMKFRVVIIPHRVS 106
LLL ++ +N T LCH+ +DL ++AD+ V +PH V+
Sbjct: 179 LLLTRRSENATVTLCHTGTRDLPALTRQADIIIAAVGVPHMVT 221


>sp|A1A171|FOLD_BIFAA Bifunctional protein folD OS=Bifidobacterium
adolescentis (strain ATCC 15703 / DSM 20083) GN=folD
PE=3 SV=1
Length = 291

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2

Query: 219 LLLKKKVQNTTPLCHSNNKDLKEADMKFRVVIIPHRVSG 103
LL +K V T LCH+ KD+++ + V++ V+G
Sbjct: 180 LLTRKAVNATVTLCHTGTKDVRDHMRRADVIVAAMGVAG 218


>sp|Q07533|CYK3_YEAST Cytokinesis protein 3 OS=Saccharomyces
cerevisiae GN=CYK3 PE=1 SV=1
Length = 885

Score = 29.3 bits (64), Expect = 6.4
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = -2

Query: 240 YFD*RYTLLLKKKVQNTTPLCHSNNKDLKEADMKFRVVIIPHRVSGASSARLLTPARKLS 61
YF + +LL++++ ++T +K ++ + +VVI P V S P +KLS
Sbjct: 59 YFPHNFVILLEERLNSSTENGRQPSKIVESFEKSNKVVIPP--VPSRYSDERPRPKKKLS 116

Query: 60 ASIPKLCVAPSEGLLTPAR 4
+S+P P + LT AR
Sbjct: 117 SSMPNSPKKPVDS-LTKAR 134


>sp|A4XBC7|FOLD2_SALTO Bifunctional protein folD 2 OS=Salinispora
tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)
GN=folD2 PE=3 SV=1
Length = 286

Score = 28.9 bits (63), Expect = 8.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2

Query: 219 LLLKKKVQNTT-PLCHSNNKDLKEADMKFRVVIIPHRVSGASSARLLTP 76
LLL ++ +N T LCH+ DL +VI+ V G ++ ++TP
Sbjct: 176 LLLTRRSENATVTLCHTGTLDLTAHTRAADIVIVAAGVPGLLTSDMITP 224


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944480|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_D07, 5'
(241 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******