DK944484 |
Clone id |
YMU02A01NGRL0006_D13 |
Library |
YMU02 |
Length |
478 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_D13. 5' end sequence. |
Accession |
DK944484 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL34Contig1 |
Sequence |
CTTGCACCAATCTGCTGAATTTACAGAGCAGTGTACAAAGTGTGAGAAGGAGAATGTAAA CAATGCGTTGTGGAACTGCCTTTCATACCCATTTGTTAGAGAAAAGATGTCTTCAGGGGA GTTGACTCTTCATGGCGGTTACTATGATTTTGTGAACAATGCATTTGAGAGTTGGTCGGT AGATTTGGCATCAATGTCGAAGGTCGAAAAGGTGCATTAAGTGGGTACAGACTGTCTCTA GGATGGAGGGTAACTAACAAAGAATTGCCGTGAGCGGCAAATAGCCTTCCTCTTCTCACG AGAGAGAAAGATGGTGTAGCAGCAATGAGTGTTCTTCATGGCATATGAGTTATATTGCTC TTGATTCGAGTTATGCATATCCAGAAAAACCATCTTGAGTGTATCATATATTGTAACTAA TCGATGGCATCGGGTTGGGACTATGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P16016 |
Definition |
sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea |
Align length |
60 |
Score (bit) |
76.6 |
E-value |
4.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944484|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_D13, 5' (448 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinac... 77 4e-14 sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sa... 73 5e-13 sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thalian... 73 5e-13 sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria... 72 8e-13 sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabid... 72 1e-12 sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis P... 72 1e-12 sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=... 71 2e-12 sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2... 71 2e-12 sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicoti... 70 3e-12 sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=... 70 4e-12 sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeu... 66 8e-11 sp|P46551|CD2L7_CAEEL Putative cell division cycle 2-related pro... 33 0.54 sp|Q54735|CYNT_SYNY3 Carbonic anhydrase OS=Synechocystis sp. (st... 30 3.6 sp|Q9I262|CYNT_PSEAE Carbonic anhydrase OS=Pseudomonas aeruginos... 30 3.6 sp|P0ABE9|CYNT_ECOLI Carbonic anhydrase 1 OS=Escherichia coli (s... 30 3.6 sp|P0ABF0|CYNT_ECO57 Carbonic anhydrase 1 OS=Escherichia coli O1... 30 3.6
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Length = 319
Score = 76.6 bits (187), Expect = 4e-14 Identities = 34/60 (56%), Positives = 42/60 (70%) Frame = +2
Query: 5 HQSAEFTEQCTKCEKENVNNALWNCLSYPFVREKMSSGELTLHGGYYDFVNNAFESWSVD 184 H +A F EQCT CEKE VN +L N L+YPFVR+ + L L GGYYDFVN +FE W ++ Sbjct: 251 HGNATFAEQCTHCEKEAVNVSLGNLLTYPFVRDGLVKKTLALQGGYYDFVNGSFELWGLE 310
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1 Length = 328
Score = 73.2 bits (178), Expect = 5e-13 Identities = 34/65 (52%), Positives = 41/65 (63%) Frame = +2
Query: 5 HQSAEFTEQCTKCEKENVNNALWNCLSYPFVREKMSSGELTLHGGYYDFVNNAFESWSVD 184 H A F E CT CEKE VN +L N L+YPFVRE + + L L GGYYDFV +FE W ++ Sbjct: 260 HGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLE 319
Query: 185 LASMS 199 S Sbjct: 320 FGLSS 324
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Length = 259
Score = 73.2 bits (178), Expect = 5e-13 Identities = 32/58 (55%), Positives = 42/58 (72%) Frame = +2
Query: 8 QSAEFTEQCTKCEKENVNNALWNCLSYPFVREKMSSGELTLHGGYYDFVNNAFESWSV 181 +S+ F +QC +CE+E VN +L N L+YPFVRE + G L L GGYYDFVN +FE W + Sbjct: 192 ESSAFEDQCGRCEREAVNVSLANLLTYPFVREGVVKGTLALKGGYYDFVNGSFELWEL 249
>sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria linearis PE=2 SV=1 Length = 190
Score = 72.4 bits (176), Expect = 8e-13 Identities = 31/56 (55%), Positives = 43/56 (76%) Frame = +2
Query: 17 EFTEQCTKCEKENVNNALWNCLSYPFVREKMSSGELTLHGGYYDFVNNAFESWSVD 184 EF + CTKCEKE VN +L N L+YPFVR+ + + +L+L G +YDFVN AF+ W++D Sbjct: 126 EFADLCTKCEKEAVNVSLGNLLTYPFVRDALVNKKLSLKGAHYDFVNGAFDLWNLD 181
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Length = 347
Score = 72.0 bits (175), Expect = 1e-12 Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 2/67 (2%) Frame = +2
Query: 20 FTEQCTKCEKENVNNALWNCLSYPFVREKMSSGELTLHGGYYDFVNNAFESWSVD--LAS 193 F +QC +CE+E VN +L N L+YPFVRE + G L L GGYYDFV AFE W ++ L+ Sbjct: 273 FEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKGAFELWGLEFGLSE 332
Query: 194 MSKVEKV 214 S V+ V Sbjct: 333 TSSVKDV 339
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Length = 330
Score = 72.0 bits (175), Expect = 1e-12 Identities = 31/65 (47%), Positives = 41/65 (63%) Frame = +2
Query: 5 HQSAEFTEQCTKCEKENVNNALWNCLSYPFVREKMSSGELTLHGGYYDFVNNAFESWSVD 184 H +QC +CEKE VN +L N L+YPFVR+ + + L L GG+YDFVN FE W++D Sbjct: 262 HNGTHLDDQCVQCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELWALD 321
Query: 185 LASMS 199 S Sbjct: 322 FGLSS 326
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Length = 329
Score = 70.9 bits (172), Expect = 2e-12 Identities = 31/65 (47%), Positives = 40/65 (61%) Frame = +2
Query: 5 HQSAEFTEQCTKCEKENVNNALWNCLSYPFVREKMSSGELTLHGGYYDFVNNAFESWSVD 184 H +QC CEKE VN +L N L+YPFVR+ + + L L GG+YDFVN FE W++D Sbjct: 261 HNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELWALD 320
Query: 185 LASMS 199 S Sbjct: 321 FGLSS 325
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Length = 330
Score = 70.9 bits (172), Expect = 2e-12 Identities = 31/65 (47%), Positives = 40/65 (61%) Frame = +2
Query: 5 HQSAEFTEQCTKCEKENVNNALWNCLSYPFVREKMSSGELTLHGGYYDFVNNAFESWSVD 184 H +QC CEKE VN +L N L+YPFVR+ + + L L GG+YDFVN FE W++D Sbjct: 262 HNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELWALD 321
Query: 185 LASMS 199 S Sbjct: 322 FGLSS 326
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Length = 321
Score = 70.5 bits (171), Expect = 3e-12 Identities = 32/60 (53%), Positives = 39/60 (65%) Frame = +2
Query: 5 HQSAEFTEQCTKCEKENVNNALWNCLSYPFVREKMSSGELTLHGGYYDFVNNAFESWSVD 184 H F +QCT CEKE VN +L N L+YPFVRE + L L GG+YDFVN FE W ++ Sbjct: 253 HVDKCFADQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGHYDFVNGGFELWGLE 312
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Length = 330
Score = 70.1 bits (170), Expect = 4e-12 Identities = 31/65 (47%), Positives = 40/65 (61%) Frame = +2
Query: 5 HQSAEFTEQCTKCEKENVNNALWNCLSYPFVREKMSSGELTLHGGYYDFVNNAFESWSVD 184 H +QC CEKE VN +L N L+YPFVR+ + + L L GG+YDFVN FE W++D Sbjct: 262 HNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNKTLALKGGHYDFVNGTFELWALD 321
Query: 185 LASMS 199 S Sbjct: 322 FGLSS 326
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QVV7 |
Definition |
tr|A7QVV7|A7QVV7_VITVI Carbonic anhydrase OS=Vitis vinifera |
Align length |
55 |
Score (bit) |
75.9 |
E-value |
1.0e-12 |
Report |
|