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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944496
Clone id YMU02A01NGRL0006_E02
Library
Length 191
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_E02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTAGTTCAGTACATGTCCAGATTGTTCGTATGCTATTGTCTAGGTTTCTTCAAACTTGG
GTTTTAGACAGGCGGTGGCAGGATTTGTGGGTTGGTCTTATGGATTTCTATATGTACGGG
TTTGTATTTTGGATTATCAATGAGGCTTTTTTTCTTGTTTACNAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q4QXJ7
Definition sp|Q4QXJ7|POLS_EEEVF Structural polyprotein OS=Eastern equine encephalitis virus (strain Florida 91-469)
Align length 25
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944496|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_E02, 5'
         (163 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4QXJ7|POLS_EEEVF Structural polyprotein OS=Eastern equine en...    32   1.3  
sp|P08768|POLS_EEEV Structural polyprotein OS=Eastern equine enc...    32   1.3  
sp|P27284|POLS_EEEV3 Structural polyprotein OS=Eastern equine en...    31   1.7  
sp|Q86925|POLS_AURAV Structural polyprotein OS=Aura virus PE=3 SV=2    31   2.2  
sp|Q306W7|POLS_EEEV8 Structural polyprotein OS=Eastern equine en...    29   6.4  
sp|Q306W5|POLS_EEEV1 Structural polyprotein OS=Eastern equine en...    29   6.4  
sp|P72823|NU4C2_SYNY3 NAD(P)H-quinone oxidoreductase chain 4-2 O...    29   6.4  

>sp|Q4QXJ7|POLS_EEEVF Structural polyprotein OS=Eastern equine
           encephalitis virus (strain Florida 91-469) PE=3 SV=1
          Length = 1242

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 150 KSLIDNPKYKPVHIEIHKTNPQILP 76
           K+L++ P Y PVH++I   N +I+P
Sbjct: 817 KALVERPGYAPVHLQIQLVNTRIIP 841


>sp|P08768|POLS_EEEV Structural polyprotein OS=Eastern equine
           encephalitis virus PE=2 SV=1
          Length = 1239

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 150 KSLIDNPKYKPVHIEIHKTNPQILP 76
           K+L++ P Y PVH++I   N +I+P
Sbjct: 814 KALVERPGYAPVHLQIQLVNTRIIP 838


>sp|P27284|POLS_EEEV3 Structural polyprotein OS=Eastern equine
           encephalitis virus (strain va33[ten broeck]) PE=3 SV=1
          Length = 1240

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 150 KSLIDNPKYKPVHIEIHKTNPQILP 76
           K+L++ P Y PVH++I   N  I+P
Sbjct: 815 KALVERPGYAPVHLQIQLVNTSIIP 839


>sp|Q86925|POLS_AURAV Structural polyprotein OS=Aura virus PE=3 SV=2
          Length = 1244

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 162 VNKKKSLIDNPKYKPVHIEIHKTNPQILP 76
           +N  K+L++ P Y P+++E+   N QI+P
Sbjct: 818 LNSYKALVERPGYAPLNLEVMVMNTQIIP 846


>sp|Q306W7|POLS_EEEV8 Structural polyprotein OS=Eastern equine
           encephalitis virus (strain PE-3.0815) PE=3 SV=1
          Length = 1242

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 150 KSLIDNPKYKPVHIEIHKTNPQILP 76
           K+L++ P Y PVH++I     +I+P
Sbjct: 817 KALVERPGYAPVHLQIQLVTTKIIP 841


>sp|Q306W5|POLS_EEEV1 Structural polyprotein OS=Eastern equine
           encephalitis virus (strain PE-0.0155) PE=3 SV=1
          Length = 1242

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 150 KSLIDNPKYKPVHIEIHKTNPQILP 76
           K+L++ P Y PVH++I     +I+P
Sbjct: 817 KALVERPGYAPVHLQIQLVTTKIIP 841


>sp|P72823|NU4C2_SYNY3 NAD(P)H-quinone oxidoreductase chain 4-2
           OS=Synechocystis sp. (strain PCC 6803) GN=ndhD2 PE=3
           SV=1
          Length = 559

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 73  RWQDLWVGLMDFYMYGFVFW 132
           RW  L VGL DF +  +VFW
Sbjct: 34  RWYALGVGLADFVLMSYVFW 53
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944496|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_E02, 5'
         (163 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******