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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944502
Clone id YMU02A01NGRL0006_E10
Library
Length 301
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_E10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAAGGAAGAGAAGAAAGAAGAGAAGGAGGAATCTGATGATGACATGGGCTTCAGTCTCT
TCGACTAAATTGTTATTCTTGTGATTCGACTACAACTGGAAGTCTCATGGATGCTTTACA
AGTCAATGAGATCTCAAACTTTGTATACTGGTTCTGGCAATGAACTTGGCCAGGTTTTGG
ATAACTTTAATCATAGAGCAGTTTTGTGATCAACCCTTTGTAGTGACATTTGTCAAGGTG
GTGCTCAAGTAAATCGAGCTATTTTTGAGACCNAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
■■Homology search results ■■ -
sp_hit_id Q59LR2
Definition sp|Q59LR2|ATR_CANAL Serine/threonine-protein kinase MEC1 OS=Candida albicans
Align length 26
Score (bit) 28.9
E-value 8.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944502|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_E10, 5'
         (256 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q59LR2|ATR_CANAL Serine/threonine-protein kinase MEC1 OS=Cand...    29   8.2  
sp|Q55D99|PAKA_DICDI Serine/threonine-protein kinase pakA OS=Dic...    29   8.3  

>sp|Q59LR2|ATR_CANAL Serine/threonine-protein kinase MEC1 OS=Candida
           albicans GN=MEC1 PE=3 SV=1
          Length = 2325

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 255 DLLEHHLDKCHYKGLITKLLYD*SYP 178
           DLLE+ +   + KG+++KL+YD S P
Sbjct: 317 DLLENFMSFSNIKGILSKLIYDDSIP 342


>sp|Q55D99|PAKA_DICDI Serine/threonine-protein kinase pakA
           OS=Dictyostelium discoideum GN=pakA PE=1 SV=1
          Length = 1197

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 102 VSWMLYKSMRSQTLYTGSGNELGQVLDNFNH 194
           V +  Y S+ S   Y+GSGN +  +++N N+
Sbjct: 98  VGYHQYSSVNSGNSYSGSGNNINNIINNSNN 128
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944502|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_E10, 5'
         (256 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******