DK944507
Clone id YMU02A01NGRL0006_E16
Library
Length 576
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_E16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGGCCACTACCCTGTTCGCCC
CCCAGAGCCCCAACCCGCTCGCCATCTCTACTGGCAGCCGTGTGAGCGCCATGCTTGTGT
GGAATCCGTATGACAACAAGAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTG
AGCAGATTGCTGAAGCAGGTGGACTTCATGGTCCGAACAGGCTGGACCCCTTGCATTGAG
TTCGACAAAATCGGGAGCGTGTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGG
CGGTACTGGGTGATGTGGAAGCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTG
CGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTT
GACGCTGACAGGCAGGTGTAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTCTAAACT
TTCTTACAGCAAGCTAATTTAGCTTGGCATGAATGCCTGCTTCCCACTTTCCACTGGCGC
CCTAACAAGCTTGCTCTTATGAGCTTTTTGTGTCCC
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 95
Score (bit) 134.0
E-value 1.0e-38
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944507|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_E16, 5'
(518 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 134 1e-38
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai... 131 1e-38
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 125 1e-37
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai... 122 1e-37
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 132 1e-37
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 129 1e-37
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 124 2e-37
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 127 2e-37
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 127 2e-37
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha... 127 2e-37
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha... 132 3e-37
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai... 132 3e-37
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha... 126 3e-37
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha... 127 5e-37
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 128 7e-37
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 128 7e-37
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai... 124 7e-37
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha... 127 7e-37
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai... 124 7e-37
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 129 1e-36
sp|P18566|RBS2_ORYSJ Ribulose bisphosphate carboxylase small cha... 132 1e-36
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha... 129 1e-36
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 128 1e-36
sp|Q0INY7|RBS1_ORYSJ Ribulose bisphosphate carboxylase small cha... 132 1e-36
sp|A2Y205|RBS1_ORYSI Ribulose bisphosphate carboxylase small cha... 132 1e-36
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 124 2e-36
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 126 2e-36
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 134 2e-36
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 134 2e-36
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai... 121 4e-36

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
Length = 181

Score = 134 bits (338), Expect(2) = 1e-38
Identities = 58/95 (61%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Frame = +3

Query: 147 LLKQVDFMVRTGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
L K++D+++R W PC+EF+ + G VYREH H GYYDGRYW MWKLPMFGC D+A V++
Sbjct: 83 LSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMK 142

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
E+ EC KEYP AFIRV+GFD RQV F+V KP
Sbjct: 143 EVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177



Score = 46.6 bits (109), Expect(2) = 1e-38
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +2

Query: 47 STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
S G RV M VW P KK+ETLSYLPPLS E +++
Sbjct: 50 SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSK 85


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
SV=1
Length = 178

Score = 131 bits (329), Expect(2) = 1e-38
Identities = 55/95 (57%), Positives = 72/95 (75%)
Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
+L ++VD+++R GW PCIEF K+G VYRE+ + GYYDGRYW MWKLPMFGC D++ VL+
Sbjct: 81 QLGQEVDYLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLK 140

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
E+ EC+K YP+ F R++GFD RQV FL KP
Sbjct: 141 EVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKP 175



Score = 49.7 bits (117), Expect(2) = 1e-38
Identities = 27/50 (54%), Positives = 30/50 (60%)
Frame = +2

Query: 5 TTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
T FA S P S G RV M VW P KKFETLSYLPPL+ EQ+ +
Sbjct: 38 TRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQ 84


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
Length = 189

Score = 125 bits (315), Expect(2) = 1e-37
Identities = 53/95 (55%), Positives = 72/95 (75%)
Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
+L+K+V+++++ W PC+EF++ G + R + + GYYDGRYWVMWKLPMFGC +A+ VL
Sbjct: 92 QLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLN 151

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
E+ ECAK YP AFIRV+GFD RQV F+V KP
Sbjct: 152 EVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186



Score = 52.0 bits (123), Expect(2) = 1e-37
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +2

Query: 47 STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
S GSRV M VW PY NKKFETLSYLP L+ EQ+ +
Sbjct: 60 SNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVK 95


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
Length = 180

Score = 122 bits (307), Expect(2) = 1e-37
Identities = 56/97 (57%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
Frame = +3

Query: 147 LLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRE 326
L KQ+D+++++GW PCIEFD G+V RE GYYDGRYW MWKLPMFGC D+A+VLRE
Sbjct: 84 LAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLRE 143

Query: 327 IAECAKEY-PEAFIRVLGFDADRQV*VSGFLVQKPSV 434
I EC K Y + +IR LGFD RQV + F+V +P++
Sbjct: 144 IEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQPTL 180



Score = 55.1 bits (131), Expect(2) = 1e-37
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +2

Query: 47 STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
+ GSRVS M VW PY+N KFETLSYLPPLS + +A+
Sbjct: 51 TNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAK 86


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
PE=1 SV=2
Length = 180

Score = 132 bits (331), Expect(2) = 1e-37
Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
Frame = +3

Query: 141 SRLLKQVDFMVRTGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 317
S L K+VD+++R W PC+EF+ + G VYREH + GYYDGRYW MWKLP+FGC D+A V
Sbjct: 79 SELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQV 138

Query: 318 LREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
L+E+ EC KEYP AFIR++GFD RQV F+ KP
Sbjct: 139 LKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175



Score = 45.4 bits (106), Expect(2) = 1e-37
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +2

Query: 47 STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
S G RV+ M VW P KKFETLSYLP L+ ++A+
Sbjct: 48 SNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
Length = 171

Score = 129 bits (325), Expect(2) = 1e-37
Identities = 55/95 (57%), Positives = 73/95 (76%)
Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
+L+K+V++++R W PC+EFD GS+ R++ GYYDGRYWVMWKLPMFGC +A+ V+
Sbjct: 76 QLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVIN 135

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
E+ ECAK YP+AFIRV+GFD RQV F+V KP
Sbjct: 136 EVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170



Score = 47.8 bits (112), Expect(2) = 1e-37
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +2

Query: 47 STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
S G RV M VW P+ N KFETLSYLP L+ EQ+ +
Sbjct: 44 SNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVK 79


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
Length = 182

Score = 124 bits (310), Expect(2) = 2e-37
Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 320
+L K+VD+++R PC+EF+ + G VYREH GYYDGRYW MWKLPMFGC D++ VL
Sbjct: 84 QLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVL 143

Query: 321 REIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
+E+ EC K YP AFIR++GFD RQV + F+ KP
Sbjct: 144 KELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179



Score = 52.8 bits (125), Expect(2) = 2e-37
Identities = 25/36 (69%), Positives = 27/36 (75%)
Frame = +2

Query: 47 STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
S G RV M VW P KKFETLSYLPPLSSEQ+A+
Sbjct: 52 SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
Length = 177

Score = 127 bits (318), Expect(2) = 2e-37
Identities = 55/98 (56%), Positives = 68/98 (69%)
Frame = +3

Query: 138 VSRLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 317
V L K+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V
Sbjct: 80 VEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQV 139

Query: 318 LREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
+ E+ E K YPE F+R++GFD RQV F+ KP+
Sbjct: 140 IAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177



Score = 49.7 bits (117), Expect(2) = 2e-37
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +2

Query: 47 STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
S G RVS M VW P KKFETLSYLPPLS E +A+
Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
Length = 177

Score = 127 bits (318), Expect(2) = 2e-37
Identities = 55/98 (56%), Positives = 68/98 (69%)
Frame = +3

Query: 138 VSRLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 317
V L K+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V
Sbjct: 80 VEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQV 139

Query: 318 LREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
+ E+ E K YPE F+R++GFD RQV F+ KP+
Sbjct: 140 IAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177



Score = 49.7 bits (117), Expect(2) = 2e-37
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +2

Query: 47 STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
S G RVS M VW P KKFETLSYLPPLS E +A+
Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85


>sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small chain
SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1
Length = 177

Score = 127 bits (318), Expect(2) = 2e-37
Identities = 55/98 (56%), Positives = 68/98 (69%)
Frame = +3

Query: 138 VSRLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 317
V L K+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V
Sbjct: 80 VEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQV 139

Query: 318 LREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
+ E+ E K YPE F+R++GFD RQV F+ KP+
Sbjct: 140 IAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177



Score = 49.7 bits (117), Expect(2) = 2e-37
Identities = 24/36 (66%), Positives = 26/36 (72%)
Frame = +2

Query: 47 STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
S G RVS M VW P KKFETLSYLPPLS E +A+
Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85


tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 96
Score (bit) 177.0
E-value 1.0e-62
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944507|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_E16, 5'
(518 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 177 1e-62
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 131 3e-40
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 131 2e-39
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 130 4e-39
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 130 5e-39
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 129 5e-39
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 127 6e-39
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c... 136 3e-38
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c... 129 1e-37
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 123 2e-37
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c... 128 3e-37
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c... 134 3e-37
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c... 125 3e-37
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c... 129 8e-37
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c... 129 8e-37
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c... 129 8e-37
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c... 129 8e-37
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 122 1e-36
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c... 134 1e-36
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 122 1e-36
tr|Q9SNZ6|Q9SNZ6_9POAL Ribulose bisphosphate carboxylase small c... 134 1e-36
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c... 128 2e-36
tr|A9NLD6|A9NLD6_PICSI Ribulose bisphosphate carboxylase small c... 128 2e-36
tr|A9NKU8|A9NKU8_PICSI Ribulose bisphosphate carboxylase small c... 128 2e-36
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c... 132 2e-36
tr|Q9FEE4|Q9FEE4_WHEAT Ribulose bisphosphate carboxylase small c... 134 2e-36
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c... 128 2e-36
tr|Q9SDY9|Q9SDY9_9POAL Ribulose bisphosphate carboxylase small c... 133 2e-36
tr|A3A381|A3A381_ORYSJ Ribulose bisphosphate carboxylase small c... 130 2e-36
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c... 130 2e-36

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
Length = 174

Score = 177 bits (449), Expect(2) = 1e-62
Identities = 79/96 (82%), Positives = 88/96 (91%)
Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
++ KQV++MVR GWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLR
Sbjct: 78 QIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLR 137

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
EIAECAKEYP AFIRVLGFDA RQV V+GFLV+KPS
Sbjct: 138 EIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173



Score = 87.4 bits (215), Expect(2) = 1e-62
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +2

Query: 2 ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
A TLFAP+ NPLAIS GSR+SAMLVW PYDNKKFETLSYLPPL+++QIA+
Sbjct: 31 ANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87740 PE=3 SV=1
Length = 179

Score = 131 bits (330), Expect(2) = 3e-40
Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 3/99 (3%)
Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAA 314
++ KQVDFM++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D+A
Sbjct: 81 QIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQ 140

Query: 315 VLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
VLREI EC + +P ++RVLGFD+ +QV + GFLV +P+
Sbjct: 141 VLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179



Score = 58.5 bits (140), Expect(2) = 3e-40
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = +2

Query: 2 ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
+TTLFA ++ ++ GSRV M VWNP KFET SYLPPL+ +QIA+
Sbjct: 34 STTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAK 84


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87752 PE=3 SV=1
Length = 179

Score = 131 bits (330), Expect(2) = 2e-39
Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 3/99 (3%)
Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAA 314
++ KQVDFM++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D+A
Sbjct: 81 QIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQ 140

Query: 315 VLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
VLREI EC + +P ++RVLGFD+ +QV + GFLV +P+
Sbjct: 141 VLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179



Score = 55.5 bits (132), Expect(2) = 2e-39
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +2

Query: 2 ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
+TTL A ++ ++ GSRV M VWNP KFET SYLPPL+ +QIA+
Sbjct: 34 STTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAK 84


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_221004 PE=3 SV=1
Length = 184

Score = 130 bits (326), Expect(2) = 4e-39
Identities = 57/99 (57%), Positives = 75/99 (75%), Gaps = 3/99 (3%)
Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAA 314
++ KQVD+M++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++
Sbjct: 86 QIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQ 145

Query: 315 VLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
VLREI EC ++P ++RVLGFD+ +QV + GFLV +P+
Sbjct: 146 VLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184



Score = 56.2 bits (134), Expect(2) = 4e-39
Identities = 26/49 (53%), Positives = 33/49 (67%)
Frame = +2

Query: 8 TLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
TLF+ ++ A+ GSRV M VWNP KFET SYLPPL+ +QIA+
Sbjct: 41 TLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAK 89


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
Length = 214

Score = 130 bits (326), Expect(2) = 5e-39
Identities = 57/99 (57%), Positives = 75/99 (75%), Gaps = 3/99 (3%)
Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAA 314
++ KQVD+M++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++
Sbjct: 116 QIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQ 175

Query: 315 VLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
VLREI EC ++P ++RVLGFD+ +QV + GFLV +P+
Sbjct: 176 VLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214



Score = 55.8 bits (133), Expect(2) = 5e-39
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +2

Query: 2 ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
+ TLF+ ++ ++ GSRV M VWNP KFET SYLPPL+ +QIA+
Sbjct: 69 SATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAK 119


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_225236 PE=3 SV=1
Length = 183

Score = 129 bits (324), Expect(2) = 5e-39
Identities = 57/98 (58%), Positives = 74/98 (75%), Gaps = 3/98 (3%)
Frame = +3

Query: 147 LLKQVDFMVRTGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAV 317
+ KQVD+M++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ V
Sbjct: 86 IAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQV 145

Query: 318 LREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
LREI EC ++P ++RVLGFD+ +QV + GFLV +P+
Sbjct: 146 LREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183



Score = 56.6 bits (135), Expect(2) = 5e-39
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +2

Query: 2 ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
+ TLF+ Q+ ++ GSRV M VWNP KFET SYLPPL+ ++IA+
Sbjct: 38 SATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAK 88


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
PE=2 SV=1
Length = 184

Score = 127 bits (320), Expect(2) = 6e-39
Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 3/99 (3%)
Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSG---YYDGRYWVMWKLPMFGCQDAAA 314
++ +QVD+M++ PCIEFD +G+V R +F GSG YYDGRYW MWKLPMFGC D++
Sbjct: 86 QIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQ 145

Query: 315 VLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
VLREI EC YP ++RVLGFD+ +QV + GFLV +P+
Sbjct: 146 VLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184



Score = 57.8 bits (138), Expect(2) = 6e-39
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2

Query: 2 ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIA 151
+ TLF +S ++ GSRV M VWNP KFET SYLPPLS +QIA
Sbjct: 39 SATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIA 88


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
chain OS=Lactuca sativa PE=2 SV=1
Length = 181

Score = 136 bits (343), Expect(2) = 3e-38
Identities = 58/95 (61%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
Frame = +3

Query: 147 LLKQVDFMVRTGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
L K++D+++R W PC+EF+ + G VYREH H GYYDGRYW MWKLPMFGC D+A V++
Sbjct: 83 LSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMK 142

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
E+ EC KEYP AFIRV+GFD+ RQV F+V KP
Sbjct: 143 EVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177



Score = 46.6 bits (109), Expect(2) = 3e-38
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +2

Query: 47 STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
S G RV M VW P KK+ETLSYLPPLS E +++
Sbjct: 50 SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSK 85


>tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small
chain OS=Picea sitchensis PE=2 SV=1
Length = 159

Score = 129 bits (324), Expect(2) = 1e-37
Identities = 59/101 (58%), Positives = 76/101 (75%)
Frame = +3

Query: 126 RLCQVSRLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQD 305
RL Q +LLK+V++++R W PC+EFD+ G + R++ GYYDGRYWVMWKLPMFGC +
Sbjct: 57 RLTQ-EQLLKEVEYLLRNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTE 115

Query: 306 AAAVLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
A+ VL E+ ECAK YP+AFIRV+GFD RQV F+V KP
Sbjct: 116 ASQVLNEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 156



Score = 52.0 bits (123), Expect(2) = 1e-37
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = +2

Query: 20 PQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQI 148
P++ N S G RV M VW PY+N KFETLSYLP L+ EQ+
Sbjct: 21 PKTSNGNGSSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQEQL 63


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_123666 PE=3 SV=1
Length = 181

Score = 123 bits (309), Expect(2) = 2e-37
Identities = 55/95 (57%), Positives = 69/95 (72%)
Frame = +3

Query: 147 LLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRE 326
+ KQV++M++ PC+EFD V RE+ GYYDGRYW MWKLPMFGCQD+A VLRE
Sbjct: 87 IAKQVEYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLRE 146

Query: 327 IAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
I EC K +P F+RVLGFD +QV + GFLV +P+
Sbjct: 147 IEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181



Score = 57.4 bits (137), Expect(2) = 2e-37
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = +2

Query: 2 ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
+ TLF+ QS ++ GSRV+ M VWNP KFET SYLPPLS + IA+
Sbjct: 39 SATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAK 89