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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944507
Clone id YMU02A01NGRL0006_E16
Library
Length 576
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_E16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGGCCACTACCCTGTTCGCCC
CCCAGAGCCCCAACCCGCTCGCCATCTCTACTGGCAGCCGTGTGAGCGCCATGCTTGTGT
GGAATCCGTATGACAACAAGAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTG
AGCAGATTGCTGAAGCAGGTGGACTTCATGGTCCGAACAGGCTGGACCCCTTGCATTGAG
TTCGACAAAATCGGGAGCGTGTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGG
CGGTACTGGGTGATGTGGAAGCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTG
CGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTT
GACGCTGACAGGCAGGTGTAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTCTAAACT
TTCTTACAGCAAGCTAATTTAGCTTGGCATGAATGCCTGCTTCCCACTTTCCACTGGCGC
CCTAACAAGCTTGCTCTTATGAGCTTTTTGTGTCCC
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 95
Score (bit) 134.0
E-value 1.0e-38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944507|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_E16, 5'
         (518 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   134   1e-38
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   131   1e-38
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   125   1e-37
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   122   1e-37
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   132   1e-37
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   129   1e-37
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   124   2e-37
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   127   2e-37
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   127   2e-37
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   127   2e-37
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   132   3e-37
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   132   3e-37
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   126   3e-37
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   127   5e-37
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   128   7e-37
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   128   7e-37
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   124   7e-37
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   127   7e-37
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   124   7e-37
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   129   1e-36
sp|P18566|RBS2_ORYSJ Ribulose bisphosphate carboxylase small cha...   132   1e-36
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   129   1e-36
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   128   1e-36
sp|Q0INY7|RBS1_ORYSJ Ribulose bisphosphate carboxylase small cha...   132   1e-36
sp|A2Y205|RBS1_ORYSI Ribulose bisphosphate carboxylase small cha...   132   1e-36
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   124   2e-36
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   126   2e-36
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...   134   2e-36
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha...   134   2e-36
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   121   4e-36

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  134 bits (338), Expect(2) = 1e-38
 Identities = 58/95 (61%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
 Frame = +3

Query: 147 LLKQVDFMVRTGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
           L K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V++
Sbjct: 83  LSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMK 142

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
           E+ EC KEYP AFIRV+GFD  RQV    F+V KP
Sbjct: 143 EVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177



 Score = 46.6 bits (109), Expect(2) = 1e-38
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = +2

Query: 47  STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           S G RV  M VW P   KK+ETLSYLPPLS E +++
Sbjct: 50  SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSK 85


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  131 bits (329), Expect(2) = 1e-38
 Identities = 55/95 (57%), Positives = 72/95 (75%)
 Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
           +L ++VD+++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+
Sbjct: 81  QLGQEVDYLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLK 140

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
           E+ EC+K YP+ F R++GFD  RQV    FL  KP
Sbjct: 141 EVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKP 175



 Score = 49.7 bits (117), Expect(2) = 1e-38
 Identities = 27/50 (54%), Positives = 30/50 (60%)
 Frame = +2

Query: 5   TTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           T  FA  S  P   S G RV  M VW P   KKFETLSYLPPL+ EQ+ +
Sbjct: 38  TRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQ 84


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score =  125 bits (315), Expect(2) = 1e-37
 Identities = 53/95 (55%), Positives = 72/95 (75%)
 Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
           +L+K+V+++++  W PC+EF++ G + R + +  GYYDGRYWVMWKLPMFGC +A+ VL 
Sbjct: 92  QLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLN 151

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
           E+ ECAK YP AFIRV+GFD  RQV    F+V KP
Sbjct: 152 EVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186



 Score = 52.0 bits (123), Expect(2) = 1e-37
 Identities = 24/36 (66%), Positives = 27/36 (75%)
 Frame = +2

Query: 47  STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           S GSRV  M VW PY NKKFETLSYLP L+ EQ+ +
Sbjct: 60  SNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVK 95


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  122 bits (307), Expect(2) = 1e-37
 Identities = 56/97 (57%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
 Frame = +3

Query: 147 LLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRE 326
           L KQ+D+++++GW PCIEFD  G+V RE     GYYDGRYW MWKLPMFGC D+A+VLRE
Sbjct: 84  LAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLRE 143

Query: 327 IAECAKEY-PEAFIRVLGFDADRQV*VSGFLVQKPSV 434
           I EC K Y  + +IR LGFD  RQV  + F+V +P++
Sbjct: 144 IEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQPTL 180



 Score = 55.1 bits (131), Expect(2) = 1e-37
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +2

Query: 47  STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           + GSRVS M VW PY+N KFETLSYLPPLS + +A+
Sbjct: 51  TNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAK 86


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  132 bits (331), Expect(2) = 1e-37
 Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
 Frame = +3

Query: 141 SRLLKQVDFMVRTGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 317
           S L K+VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+FGC D+A V
Sbjct: 79  SELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQV 138

Query: 318 LREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
           L+E+ EC KEYP AFIR++GFD  RQV    F+  KP
Sbjct: 139 LKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175



 Score = 45.4 bits (106), Expect(2) = 1e-37
 Identities = 20/36 (55%), Positives = 25/36 (69%)
 Frame = +2

Query: 47  STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           S G RV+ M VW P   KKFETLSYLP L+  ++A+
Sbjct: 48  SNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  129 bits (325), Expect(2) = 1e-37
 Identities = 55/95 (57%), Positives = 73/95 (76%)
 Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
           +L+K+V++++R  W PC+EFD  GS+ R++    GYYDGRYWVMWKLPMFGC +A+ V+ 
Sbjct: 76  QLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVIN 135

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
           E+ ECAK YP+AFIRV+GFD  RQV    F+V KP
Sbjct: 136 EVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170



 Score = 47.8 bits (112), Expect(2) = 1e-37
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = +2

Query: 47  STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           S G RV  M VW P+ N KFETLSYLP L+ EQ+ +
Sbjct: 44  SNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVK 79


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  124 bits (310), Expect(2) = 2e-37
 Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
 Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 320
           +L K+VD+++R    PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D++ VL
Sbjct: 84  QLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVL 143

Query: 321 REIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
           +E+ EC K YP AFIR++GFD  RQV +  F+  KP
Sbjct: 144 KELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179



 Score = 52.8 bits (125), Expect(2) = 2e-37
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +2

Query: 47  STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           S G RV  M VW P   KKFETLSYLPPLSSEQ+A+
Sbjct: 52  SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  127 bits (318), Expect(2) = 2e-37
 Identities = 55/98 (56%), Positives = 68/98 (69%)
 Frame = +3

Query: 138 VSRLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 317
           V  L K+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V
Sbjct: 80  VEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQV 139

Query: 318 LREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
           + E+ E  K YPE F+R++GFD  RQV    F+  KP+
Sbjct: 140 IAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177



 Score = 49.7 bits (117), Expect(2) = 2e-37
 Identities = 24/36 (66%), Positives = 26/36 (72%)
 Frame = +2

Query: 47  STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           S G RVS M VW P   KKFETLSYLPPLS E +A+
Sbjct: 50  SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  127 bits (318), Expect(2) = 2e-37
 Identities = 55/98 (56%), Positives = 68/98 (69%)
 Frame = +3

Query: 138 VSRLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 317
           V  L K+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V
Sbjct: 80  VEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQV 139

Query: 318 LREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
           + E+ E  K YPE F+R++GFD  RQV    F+  KP+
Sbjct: 140 IAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177



 Score = 49.7 bits (117), Expect(2) = 2e-37
 Identities = 24/36 (66%), Positives = 26/36 (72%)
 Frame = +2

Query: 47  STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           S G RVS M VW P   KKFETLSYLPPLS E +A+
Sbjct: 50  SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85


>sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1
          Length = 177

 Score =  127 bits (318), Expect(2) = 2e-37
 Identities = 55/98 (56%), Positives = 68/98 (69%)
 Frame = +3

Query: 138 VSRLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 317
           V  L K+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V
Sbjct: 80  VEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQV 139

Query: 318 LREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
           + E+ E  K YPE F+R++GFD  RQV    F+  KP+
Sbjct: 140 IAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177



 Score = 49.7 bits (117), Expect(2) = 2e-37
 Identities = 24/36 (66%), Positives = 26/36 (72%)
 Frame = +2

Query: 47  STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           S G RVS M VW P   KKFETLSYLPPLS E +A+
Sbjct: 50  SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 96
Score (bit) 177.0
E-value 1.0e-62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944507|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_E16, 5'
         (518 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   177   1e-62
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   131   3e-40
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   131   2e-39
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   130   4e-39
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   130   5e-39
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   129   5e-39
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   127   6e-39
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   136   3e-38
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   129   1e-37
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   123   2e-37
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   128   3e-37
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   134   3e-37
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   125   3e-37
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   129   8e-37
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   129   8e-37
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...   129   8e-37
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...   129   8e-37
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   122   1e-36
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   134   1e-36
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   122   1e-36
tr|Q9SNZ6|Q9SNZ6_9POAL Ribulose bisphosphate carboxylase small c...   134   1e-36
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c...   128   2e-36
tr|A9NLD6|A9NLD6_PICSI Ribulose bisphosphate carboxylase small c...   128   2e-36
tr|A9NKU8|A9NKU8_PICSI Ribulose bisphosphate carboxylase small c...   128   2e-36
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   132   2e-36
tr|Q9FEE4|Q9FEE4_WHEAT Ribulose bisphosphate carboxylase small c...   134   2e-36
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   128   2e-36
tr|Q9SDY9|Q9SDY9_9POAL Ribulose bisphosphate carboxylase small c...   133   2e-36
tr|A3A381|A3A381_ORYSJ Ribulose bisphosphate carboxylase small c...   130   2e-36
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c...   130   2e-36

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  177 bits (449), Expect(2) = 1e-62
 Identities = 79/96 (82%), Positives = 88/96 (91%)
 Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
           ++ KQV++MVR GWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLR
Sbjct: 78  QIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLR 137

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
           EIAECAKEYP AFIRVLGFDA RQV V+GFLV+KPS
Sbjct: 138 EIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173



 Score = 87.4 bits (215), Expect(2) = 1e-62
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +2

Query: 2   ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           A TLFAP+  NPLAIS GSR+SAMLVW PYDNKKFETLSYLPPL+++QIA+
Sbjct: 31  ANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  131 bits (330), Expect(2) = 3e-40
 Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 3/99 (3%)
 Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAA 314
           ++ KQVDFM++    PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A 
Sbjct: 81  QIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQ 140

Query: 315 VLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
           VLREI EC + +P  ++RVLGFD+ +QV + GFLV +P+
Sbjct: 141 VLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179



 Score = 58.5 bits (140), Expect(2) = 3e-40
 Identities = 27/51 (52%), Positives = 35/51 (68%)
 Frame = +2

Query: 2   ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           +TTLFA ++    ++  GSRV  M VWNP    KFET SYLPPL+ +QIA+
Sbjct: 34  STTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAK 84


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  131 bits (330), Expect(2) = 2e-39
 Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 3/99 (3%)
 Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAA 314
           ++ KQVDFM++    PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A 
Sbjct: 81  QIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQ 140

Query: 315 VLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
           VLREI EC + +P  ++RVLGFD+ +QV + GFLV +P+
Sbjct: 141 VLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179



 Score = 55.5 bits (132), Expect(2) = 2e-39
 Identities = 26/51 (50%), Positives = 34/51 (66%)
 Frame = +2

Query: 2   ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           +TTL A ++    ++  GSRV  M VWNP    KFET SYLPPL+ +QIA+
Sbjct: 34  STTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAK 84


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  130 bits (326), Expect(2) = 4e-39
 Identities = 57/99 (57%), Positives = 75/99 (75%), Gaps = 3/99 (3%)
 Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAA 314
           ++ KQVD+M++    PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ 
Sbjct: 86  QIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQ 145

Query: 315 VLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
           VLREI EC  ++P  ++RVLGFD+ +QV + GFLV +P+
Sbjct: 146 VLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184



 Score = 56.2 bits (134), Expect(2) = 4e-39
 Identities = 26/49 (53%), Positives = 33/49 (67%)
 Frame = +2

Query: 8   TLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           TLF+ ++    A+  GSRV  M VWNP    KFET SYLPPL+ +QIA+
Sbjct: 41  TLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAK 89


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  130 bits (326), Expect(2) = 5e-39
 Identities = 57/99 (57%), Positives = 75/99 (75%), Gaps = 3/99 (3%)
 Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAA 314
           ++ KQVD+M++    PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ 
Sbjct: 116 QIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQ 175

Query: 315 VLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
           VLREI EC  ++P  ++RVLGFD+ +QV + GFLV +P+
Sbjct: 176 VLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214



 Score = 55.8 bits (133), Expect(2) = 5e-39
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = +2

Query: 2   ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           + TLF+ ++    ++  GSRV  M VWNP    KFET SYLPPL+ +QIA+
Sbjct: 69  SATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAK 119


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  129 bits (324), Expect(2) = 5e-39
 Identities = 57/98 (58%), Positives = 74/98 (75%), Gaps = 3/98 (3%)
 Frame = +3

Query: 147 LLKQVDFMVRTGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAV 317
           + KQVD+M++    PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ V
Sbjct: 86  IAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQV 145

Query: 318 LREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
           LREI EC  ++P  ++RVLGFD+ +QV + GFLV +P+
Sbjct: 146 LREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183



 Score = 56.6 bits (135), Expect(2) = 5e-39
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = +2

Query: 2   ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           + TLF+ Q+    ++  GSRV  M VWNP    KFET SYLPPL+ ++IA+
Sbjct: 38  SATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAK 88


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  127 bits (320), Expect(2) = 6e-39
 Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 3/99 (3%)
 Frame = +3

Query: 144 RLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSG---YYDGRYWVMWKLPMFGCQDAAA 314
           ++ +QVD+M++    PCIEFD +G+V R +F GSG   YYDGRYW MWKLPMFGC D++ 
Sbjct: 86  QIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQ 145

Query: 315 VLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
           VLREI EC   YP  ++RVLGFD+ +QV + GFLV +P+
Sbjct: 146 VLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184



 Score = 57.8 bits (138), Expect(2) = 6e-39
 Identities = 27/50 (54%), Positives = 32/50 (64%)
 Frame = +2

Query: 2   ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIA 151
           + TLF  +S    ++  GSRV  M VWNP    KFET SYLPPLS +QIA
Sbjct: 39  SATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIA 88


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  136 bits (343), Expect(2) = 3e-38
 Identities = 58/95 (61%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
 Frame = +3

Query: 147 LLKQVDFMVRTGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 323
           L K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V++
Sbjct: 83  LSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMK 142

Query: 324 EIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
           E+ EC KEYP AFIRV+GFD+ RQV    F+V KP
Sbjct: 143 EVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177



 Score = 46.6 bits (109), Expect(2) = 3e-38
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = +2

Query: 47  STGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           S G RV  M VW P   KK+ETLSYLPPLS E +++
Sbjct: 50  SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSK 85


>tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small
           chain OS=Picea sitchensis PE=2 SV=1
          Length = 159

 Score =  129 bits (324), Expect(2) = 1e-37
 Identities = 59/101 (58%), Positives = 76/101 (75%)
 Frame = +3

Query: 126 RLCQVSRLLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQD 305
           RL Q  +LLK+V++++R  W PC+EFD+ G + R++    GYYDGRYWVMWKLPMFGC +
Sbjct: 57  RLTQ-EQLLKEVEYLLRNKWVPCLEFDEDGIIKRKYGSTPGYYDGRYWVMWKLPMFGCTE 115

Query: 306 AAAVLREIAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKP 428
           A+ VL E+ ECAK YP+AFIRV+GFD  RQV    F+V KP
Sbjct: 116 ASQVLNEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 156



 Score = 52.0 bits (123), Expect(2) = 1e-37
 Identities = 24/43 (55%), Positives = 29/43 (67%)
 Frame = +2

Query: 20  PQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQI 148
           P++ N    S G RV  M VW PY+N KFETLSYLP L+ EQ+
Sbjct: 21  PKTSNGNGSSNGGRVRCMQVWPPYNNPKFETLSYLPRLTQEQL 63


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  123 bits (309), Expect(2) = 2e-37
 Identities = 55/95 (57%), Positives = 69/95 (72%)
 Frame = +3

Query: 147 LLKQVDFMVRTGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLRE 326
           + KQV++M++    PC+EFD    V RE+    GYYDGRYW MWKLPMFGCQD+A VLRE
Sbjct: 87  IAKQVEYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLRE 146

Query: 327 IAECAKEYPEAFIRVLGFDADRQV*VSGFLVQKPS 431
           I EC K +P  F+RVLGFD  +QV + GFLV +P+
Sbjct: 147 IEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181



 Score = 57.4 bits (137), Expect(2) = 2e-37
 Identities = 27/51 (52%), Positives = 34/51 (66%)
 Frame = +2

Query: 2   ATTLFAPQSPNPLAISTGSRVSAMLVWNPYDNKKFETLSYLPPLSSEQIAE 154
           + TLF+ QS    ++  GSRV+ M VWNP    KFET SYLPPLS + IA+
Sbjct: 39  SATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAK 89