DK944518 |
Clone id |
YMU02A01NGRL0006_F06 |
Library |
YMU02 |
Length |
591 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_F06. 5' end sequence. |
Accession |
DK944518 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL24Contig1 |
Sequence |
GAGGAGTTCTATGTGATCACATGGGAGTCGCCGAAGGAACAGATCTTCGAGATGCCGACG GGAGGAGCTGCGATCATGAGGTCGGGGCCAAATCTTTTGAAGCTTGCGAGGAAGGAGCAG TGCCTTGCCCTTGGCACCAAGCTGCGTTCCAAGTTTAAAATTAATTACCAGTTCTACCGA GTGTTTCCTAATGGCGAGGTGCAGTACCTTCATCCCAAGGACGGAGTATACCCCGAGAAA GTGAACCCCGGCCGCAAGGGTGTTGGCGTGAACTTGCGCTCTATTGGAGAGAATGTAAAC CCCGCCACAGTCAAGTTCACTGGCAAGAACGCTTACGATTTGTGAGGAGCATGTTGCGGA CCCCTTTATGATTCTTTCTGTAAGTGGTCTGTGGCAAGCTCATGTCTTCTATCTTTCATG ATTGTAAAGTTTTTCTGTAATAGACTACTTCTTCCTCCGACGGTTCCAGTCTGAGAGCTT GTCATAAGTTGAGTTCATTCTATGGACTTGAACTGTCTATGTTTGTTATGGAAGGTACCT AGCTTTACTGTTTGACAGTTGAATTGGCATTTGTGTCATCAACTCAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P32869 |
Definition |
sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus |
Align length |
114 |
Score (bit) |
214.0 |
E-value |
3.0e-55 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944518|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_F06, 5' (591 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c... 214 3e-55 sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c... 214 3e-55 sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2... 213 6e-55 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1... 213 6e-55 sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, c... 210 4e-54 sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, c... 206 5e-53 sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, c... 206 7e-53 sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, c... 172 9e-43 sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS... 171 3e-42 sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS... 163 5e-40 sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, c... 162 1e-39 sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS... 160 6e-39 sp|P19569|PSAD_SYNY3 Photosystem I reaction center subunit II OS... 158 2e-38 sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS... 155 1e-37 sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS... 155 1e-37 sp|O07115|PSAD_MASLA Photosystem I reaction center subunit II OS... 153 7e-37 sp|Q9TLR2|PSAD_CYACA Photosystem I reaction center subunit II OS... 150 5e-36 sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS... 149 8e-36 sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS... 148 2e-35 sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS... 146 7e-35 sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS... 146 7e-35 sp|P0A421|PSAD_SYNEN Photosystem I reaction center subunit II OS... 146 7e-35 sp|P58573|PSAD_ANASP Photosystem I reaction center subunit II OS... 145 2e-34 sp|P56596|PSAD_NOSS8 Photosystem I reaction center subunit II OS... 141 3e-33 sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS... 136 9e-32 sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS... 128 2e-29 sp|Q5HW65|GLYA_CAMJR Serine hydroxymethyltransferase OS=Campylob... 33 1.4 sp|A1VYC2|GLYA_CAMJJ Serine hydroxymethyltransferase OS=Campylob... 33 1.4 sp|P24531|GLYA_CAMJE Serine hydroxymethyltransferase OS=Campylob... 33 1.4 sp|A7H4X6|GLYA_CAMJD Serine hydroxymethyltransferase OS=Campylob... 33 1.4
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1 Length = 207
Score = 214 bits (545), Expect = 3e-55 Identities = 101/114 (88%), Positives = 106/114 (92%) Frame = +1
Query: 1 EEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYR 180 EEFYVITWESPKEQIFEMPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYR Sbjct: 94 EEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 153
Query: 181 VFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 342 VFPNGEVQYLHPKDGVYPEKVNPGR+GVG N RSIG+NV+P VKFTGK YDL Sbjct: 154 VFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2 Length = 212
Score = 214 bits (544), Expect = 3e-55 Identities = 100/114 (87%), Positives = 108/114 (94%) Frame = +1
Query: 1 EEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYR 180 EEFYVITWESPKEQIFEMPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYR Sbjct: 99 EEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 158
Query: 181 VFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 342 VFP+GEVQYLHPKDGVYPEKVNPGR+GVG+N+RSIG+NV+P VKFTGK YDL Sbjct: 159 VFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1 Length = 204
Score = 213 bits (542), Expect = 6e-55 Identities = 99/114 (86%), Positives = 107/114 (93%) Frame = +1
Query: 1 EEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYR 180 EEFYVITW SPKEQIFEMPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYR Sbjct: 91 EEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYR 150
Query: 181 VFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 342 VFPNGEVQYLHPKDGVYPEK NPGR+GVG+N+RSIG+NV+P VKFTGK +YDL Sbjct: 151 VFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204
>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1 Length = 208
Score = 213 bits (542), Expect = 6e-55 Identities = 99/114 (86%), Positives = 107/114 (93%) Frame = +1
Query: 1 EEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYR 180 EEFYVITW SPKEQIFEMPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYR Sbjct: 95 EEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYR 154
Query: 181 VFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 342 VFPNGEVQYLHPKDGVYPEK NPGR+GVG+N+RSIG+NV+P VKFTGK +YDL Sbjct: 155 VFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1 Length = 208
Score = 210 bits (535), Expect = 4e-54 Identities = 99/114 (86%), Positives = 105/114 (92%) Frame = +1
Query: 1 EEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYR 180 EEFYVITWESPKEQIFEMPTGGAAIMR GPNLLKLARKEQCLALGT+LRSK+KINYQFYR Sbjct: 95 EEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYR 154
Query: 181 VFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 342 VFPNGEVQYLHPKDGVYPEKVNPGR+GVG N RSIG+N + VKFTGK YD+ Sbjct: 155 VFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1 Length = 204
Score = 206 bits (525), Expect = 5e-53 Identities = 98/114 (85%), Positives = 104/114 (91%) Frame = +1
Query: 1 EEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYR 180 EEFYVITWESPKEQIFEMPTGGAAIMR G NLLKLARKEQCLALGT+LRSK+KINY+FYR Sbjct: 91 EEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYR 150
Query: 181 VFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 342 VFPNGEVQYLHPKDGVYPEKVN GR+GVG N RSIG+N +P VKFTGK YDL Sbjct: 151 VFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1 Length = 205
Score = 206 bits (524), Expect = 7e-53 Identities = 96/114 (84%), Positives = 105/114 (92%) Frame = +1
Query: 1 EEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYR 180 EEFYVITW SPKEQ+FEMPTGGAAIMR GPNLLKLARKEQCLALG +LRSK+KI YQFYR Sbjct: 92 EEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYR 151
Query: 181 VFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYDL 342 VFPNGEVQYLHPKDGVYPEKVN GR+GVG N RSIG+NV+P VKFTGKN++D+ Sbjct: 152 VFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205
>sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1 Length = 196
Score = 172 bits (437), Expect = 9e-43 Identities = 81/109 (74%), Positives = 92/109 (84%) Frame = +1
Query: 1 EEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYR 180 EEFYVITWE+ KEQIFEMPTGGAAIMR GPNLLK +KEQCLAL T+LR+KFK+ FYR Sbjct: 81 EEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYR 140
Query: 181 VFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGK 327 VFP+G+VQYLHP DGVYPEKVN GR G N+R IG+NVNP VKF+G+ Sbjct: 141 VFPDGKVQYLHPADGVYPEKVNAGRVGANQNMRRIGQNVNPIKVKFSGR 189
>sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1 Length = 141
Score = 171 bits (432), Expect = 3e-42 Identities = 82/114 (71%), Positives = 96/114 (84%), Gaps = 1/114 (0%) Frame = +1
Query: 1 EEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKI-NYQFY 177 EE Y ITW SPKEQ+FEMPTGGAAIMR G NLL LARKEQCLALGT++++ FKI +Y+ Y Sbjct: 28 EEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIY 87
Query: 178 RVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYD 339 R+FP+GEVQYLHPKDGV+PEKVNPGR GVG SIG+N+NPA +KFT K+ D Sbjct: 88 RIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNKSFCD 141
>sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1 Length = 139
Score = 163 bits (413), Expect = 5e-40 Identities = 82/114 (71%), Positives = 94/114 (82%), Gaps = 1/114 (0%) Frame = +1
Query: 1 EEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGTKLRSKFKIN-YQFY 177 EE Y ITW S KEQIFEMPTGGAAIMR+G NLL LARKEQCLALGT+LR+ FKIN Y+ Y Sbjct: 26 EEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRT-FKINDYKIY 84
Query: 178 RVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNLRSIGENVNPATVKFTGKNAYD 339 R+FP+GEVQYLHPKDGV+PEKVNPGR V SIG+N NPA++KF+G Y+ Sbjct: 85 RIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NL03 |
Definition |
tr|A9NL03|A9NL03_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
114 |
Score (bit) |
219.0 |
E-value |
7.0e-56 |
Report |
|