DK944533
Clone id YMU02A01NGRL0006_G06
Library
Length 300
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_G06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGTCCAATCGTGTGAATCACCA
CCACTCACTATATGCTCTCTGCAGTTGTATATGCTGCCTAGTCAGTAAATTGTGAAAGGG
ATATGAGGTACCAAGTTTTTAATGTTATGGTAAACCTCCATTTGTTGTATGCTGAGCAAC
TTGATTTGCCCATGTATCTTACATTATGGCAATCAGTTTGTGTTGGCTCTTCTGGCCTTT
TCAATTGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8N4F7
Definition sp|Q8N4F7|RN175_HUMAN RING finger protein 175 OS=Homo sapiens
Align length 36
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944533|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_G06, 5'
(210 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8N4F7|RN175_HUMAN RING finger protein 175 OS=Homo sapiens GN... 31 2.2
sp|P49035|SUS1_DAUCA Sucrose synthase isoform 1 OS=Daucus carota... 30 2.9

>sp|Q8N4F7|RN175_HUMAN RING finger protein 175 OS=Homo sapiens
GN=RNF175 PE=2 SV=1
Length = 328

Score = 30.8 bits (68), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2

Query: 80 DMRYQVFNVMVNLHLLYAEQLDLPMYLTLWQSVCVG 187
D++ + N H LY + LD YL WQ V +G
Sbjct: 281 DLKRMISNPWERTHFLYGQILDWLRYLVAWQPVVIG 316


>sp|P49035|SUS1_DAUCA Sucrose synthase isoform 1 OS=Daucus carota
PE=2 SV=1
Length = 808

Score = 30.4 bits (67), Expect = 2.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2

Query: 104 VMVNLHLLYAEQLDLPMYLTLWQSVCVGSS 193
V VN+H L E+L +P YL + + +GSS
Sbjct: 100 VRVNVHHLVVEELSVPQYLQFKEELVIGSS 129


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944533|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_G06, 5'
(210 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******