NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944542
Clone id YMU02A01NGRL0006_G15
Library
Length 504
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_G15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GACAAATATAAAGCCCATGTGAAACGATCTCTAGGGTTGTGTATAAGCCTTTCGCGCTGG
GCCTTCTCTACGCAGGCGCGGTCGATCAACTCTTGCTCCGACAATGAGGGCTAAGTGGAA
GAAGAAAAGAATGCGCAGGTTGAAGAGGAAACGCATAAAGATGAGGCAGAGATCCAAGTA
GGACTTTTGAAGTTTCTATCGGCGCTGAGGGAGCATGTGTGGTCTTCTATCTCAATGGAG
AGTTTGAGCTGGATCTCTCTCTTGTGAATAGCGTAGCAGTGACAAGGGATTGATTGCTTC
TCTTATACCCTCCCAAGGACGAAGGCCTGCTCTCCTTCTGGAATATGATTTTGAGTTGTC
TTTCTTTTTGCCCTTTTGATGAACGCTCTAAGGCTAACATGAAAACTGGATTATTGAGAC
TATTGTTTTGTGCATCTTTTGGCTCTTGTTACTAGATTTTTAAATAGAGGAAGGAAGGCT
GAAGTGTGTTTTCAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q3UQN2
Definition sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus
Align length 138
Score (bit) 36.2
E-value 0.084
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944542|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_G15, 5'
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus ...    36   0.084
sp|A5E7U6|RIX1_LODEL Pre-rRNA-processing protein RIX1 OS=Loddero...    31   3.5  
sp|O88974|SETB1_MOUSE Histone-lysine N-methyltransferase SETDB1 ...    30   6.0  
sp|O50918|DBPB_BORBU Decorin-binding protein B OS=Borrelia burgd...    30   6.0  

>sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus
           GN=Fcho2 PE=1 SV=1
          Length = 809

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
 Frame = -1

Query: 421 SLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSN 242
           S+ N     A+ R S  Q  R        +S+PSSL   K +N  L    LF     SS+
Sbjct: 380 SIGNITLSPAVSRHSPVQMNRNSSNEELTKSKPSSLPTEKGTNDLLAWDPLFGSSLESSS 439

Query: 241 SPLR*KTTHAPSAPIETSKVL----LGSLPHLYAFPLQPAHSFLLPLSPHCRSKS--*ST 80
           +PL   ++  P+ P+    ++      S P L +  L   +    P SP   S +    T
Sbjct: 440 APLTSSSSARPTTPLSLGTLVPPPRPASRPKLASGKLSGINEIPRPFSPPVTSNTSPPPT 499

Query: 79  APA*RRPSAKGLYTTLEI 26
           AP  R  S+  + ++  +
Sbjct: 500 APLARAESSSSISSSASL 517


>sp|A5E7U6|RIX1_LODEL Pre-rRNA-processing protein RIX1
           OS=Lodderomyces elongisporus GN=RIX1 PE=3 SV=1
          Length = 793

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +1

Query: 19  VKRSLGLCISLSRWAFSTQARSINSCSDNEGXXXXXXXXXXXXXTHKDEAEIQVGLLKFL 198
           V+  LGLC++L    FS  AR ++  SD                 H    E+   LL+F 
Sbjct: 314 VRLPLGLCLTLLEVVFSINARFLSYKSDVRDDEIRQLISTVLNRVHTSGIELLSSLLQFR 373

Query: 199 SALREHV 219
            AL  H+
Sbjct: 374 GALVPHL 380


>sp|O88974|SETB1_MOUSE Histone-lysine N-methyltransferase SETDB1
            OS=Mus musculus GN=Setdb1 PE=1 SV=1
          Length = 1307

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 394  ALERSSKGQKERQLKIIFQKESRPSSLG 311
            A  R ++GQKE +L  +  K+SRP  LG
Sbjct: 943  ATRRQTRGQKENELSEMTSKDSRPPDLG 970


>sp|O50918|DBPB_BORBU Decorin-binding protein B OS=Borrelia
           burgdorferi GN=dbpB PE=3 SV=1
          Length = 187

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = -1

Query: 439 KDAQNNSLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQS 287
           ++++NN +N    +LA    +K Q E QLK++  KE +    GG K++N+S
Sbjct: 139 EESKNNPINTAERLLA----AKAQIENQLKVV--KEKQNIENGGEKKNNKS 183
tr_hit_id Q6P5W2
Definition tr|Q6P5W2|Q6P5W2_HUMAN LOC400590 protein OS=Homo sapiens
Align length 35
Score (bit) 40.8
E-value 0.035
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944542|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_G15, 5'
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6P5W2|Q6P5W2_HUMAN LOC400590 protein OS=Homo sapiens GN=LOC4...    41   0.035
tr|Q28BL8|Q28BL8_XENTR Novel protein similar to Rab11fip1 (Fragm...    36   0.86 
tr|A4IHL6|A4IHL6_XENTR Rab11fip1 protein OS=Xenopus tropicalis G...    36   0.86 
tr|Q3TPU3|Q3TPU3_MOUSE Putative uncharacterized protein OS=Mus m...    36   0.86 
tr|A0AUP3|A0AUP3_HUMAN LOC339290 protein (Fragment) OS=Homo sapi...    35   2.5  
tr|A9V6G6|A9V6G6_MONBE Predicted protein OS=Monosiga brevicollis...    34   3.3  
tr|A4HU21|A4HU21_LEIIN Putative uncharacterized protein OS=Leish...    34   3.3  
tr|A4S1I5|A4S1I5_OSTLU Predicted protein (Fragment) OS=Ostreococ...    33   5.6  
tr|Q8IAQ1|Q8IAQ1_PLAF7 Putative uncharacterized protein PF08_011...    33   5.6  
tr|B4P842|B4P842_DROYA GE12834 OS=Drosophila yakuba GN=GE12834 P...    33   5.6  
tr|A0DSY9|A0DSY9_PARTE Chromosome undetermined scaffold_62, whol...    33   5.6  
tr|Q6BLU2|Q6BLU2_DEBHA DEHA2F10714p OS=Debaryomyces hansenii GN=...    33   5.6  
tr|Q4QHS5|Q4QHS5_LEIMA Putative uncharacterized protein OS=Leish...    33   9.5  
tr|A9UYH3|A9UYH3_MONBE Predicted protein OS=Monosiga brevicollis...    33   9.5  

>tr|Q6P5W2|Q6P5W2_HUMAN LOC400590 protein OS=Homo sapiens
           GN=LOC400590 PE=2 SV=1
          Length = 102

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = -1

Query: 208 SAPIETSKVLLGSLPHLYAFPLQPAHSFLLPLSPH 104
           ++ ++ +  LLG LPHL +F LQPAHS L PL  H
Sbjct: 55  ASTVQQASGLLGPLPHLSSFALQPAHSLLPPLGSH 89


>tr|Q28BL8|Q28BL8_XENTR Novel protein similar to Rab11fip1
           (Fragment) OS=Xenopus tropicalis GN=TEgg047a21.1-001
           PE=2 SV=1
          Length = 996

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = -1

Query: 448 QEPKDA-QNNS----LNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSL 284
           + PKD+ Q NS      NP++  A   SSK  KE +  +  +KE  P++      SN SL
Sbjct: 327 ESPKDSSQTNSPQIVRKNPLYASAENLSSKTPKEAKNSLFPEKEQTPAA------SNDSL 380

Query: 283 VTATLFTRERSSSNSPLR*KTTHAPS 206
            ++T+   + S S  P R KT   PS
Sbjct: 381 KSSTVSASQNSKSEEP-RSKTPPLPS 405


>tr|A4IHL6|A4IHL6_XENTR Rab11fip1 protein OS=Xenopus tropicalis
           GN=rab11fip1 PE=2 SV=1
          Length = 601

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = -1

Query: 448 QEPKDA-QNNS----LNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSL 284
           + PKD+ Q NS      NP++  A   SSK  KE +  +  +KE  P++      SN SL
Sbjct: 327 ESPKDSSQTNSPQIVRKNPLYASAENLSSKTPKEAKNSLFPEKEQTPAA------SNDSL 380

Query: 283 VTATLFTRERSSSNSPLR*KTTHAPS 206
            ++T+   + S S  P R KT   PS
Sbjct: 381 KSSTVSASQNSKSEEP-RSKTPPLPS 405


>tr|Q3TPU3|Q3TPU3_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Fcho2 PE=1 SV=1
          Length = 538

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
 Frame = -1

Query: 421 SLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSN 242
           S+ N     A+ R S  Q  R        +S+PSSL   K +N  L    LF     SS+
Sbjct: 109 SIGNITLSPAVSRHSPVQMNRNSSNEELTKSKPSSLPTEKGTNDLLAWDPLFGSSLESSS 168

Query: 241 SPLR*KTTHAPSAPIETSKVL----LGSLPHLYAFPLQPAHSFLLPLSPHCRSKS--*ST 80
           +PL   ++  P+ P+    ++      S P L +  L   +    P SP   S +    T
Sbjct: 169 APLTSSSSARPTTPLSLGTLVPPPRPASRPKLASGKLSGINEIPRPFSPPVTSNTSPPPT 228

Query: 79  APA*RRPSAKGLYTTLEI 26
           AP  R  S+  + ++  +
Sbjct: 229 APLARAESSSSISSSASL 246


>tr|A0AUP3|A0AUP3_HUMAN LOC339290 protein (Fragment) OS=Homo sapiens
           GN=LOC339290 PE=2 SV=1
          Length = 137

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/26 (61%), Positives = 17/26 (65%)
 Frame = -1

Query: 181 LLGSLPHLYAFPLQPAHSFLLPLSPH 104
           LLG LPHL +F  QPAHS L  L  H
Sbjct: 75  LLGPLPHLSSFAFQPAHSLLSLLGSH 100


>tr|A9V6G6|A9V6G6_MONBE Predicted protein OS=Monosiga brevicollis
           GN=27937 PE=4 SV=1
          Length = 323

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -1

Query: 352 KIIFQKESRP-----SSLGGYKRSNQSLVTATLFTRERSSSNSPLR*KTTHAPSAPIETS 188
           +++F + SRP     SS    KR+  +   +   T++   S +P + + T APS P ETS
Sbjct: 254 RLVFNRTSRPTAAAASSTAASKRTKPTSAPSATVTKKAKPSPAPKKHEPTQAPSPPPETS 313

Query: 187 K 185
           +
Sbjct: 314 R 314


>tr|A4HU21|A4HU21_LEIIN Putative uncharacterized protein OS=Leishmania
            infantum GN=LinJ09.1050 PE=4 SV=1
          Length = 5363

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 25/85 (29%), Positives = 38/85 (44%)
 Frame = -1

Query: 364  ERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSNSPLR*KTTHAPSAPIETSK 185
            E +L + F   S   ++G   R +QSL +ATL T                 PS P + S 
Sbjct: 1763 EEELVLSFAVSSGDDTIGTVARRSQSLSSATLHT----------------MPSTPSDRSS 1806

Query: 184  VLLGSLPHLYAFPLQPAHSFLLPLS 110
            V   ++P    +P++PA +  LP S
Sbjct: 1807 VTAAAVPTTIMYPMRPAEA--LPTS 1829


>tr|A4S1I5|A4S1I5_OSTLU Predicted protein (Fragment) OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_88023 PE=4 SV=1
          Length = 424

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = -1

Query: 415 NNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERSSSNSP 236
           NNPV M  L+  S+ +KER+     +KE+R       KR  +S       +  RS S SP
Sbjct: 160 NNPVKMAQLKDESRAEKERRRA---KKEARRDKKRSSKRDKRSR-KCDSSSESRSRSRSP 215

Query: 235 LR*KTTHAPSAPIETSK 185
            R +  H   +P   S+
Sbjct: 216 KRERRRHRSRSPRHRSR 232


>tr|Q8IAQ1|Q8IAQ1_PLAF7 Putative uncharacterized protein PF08_0116
           OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0116 PE=4
           SV=1
          Length = 698

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 15/64 (23%), Positives = 34/64 (53%)
 Frame = -1

Query: 430 QNNSLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYKRSNQSLVTATLFTRERS 251
           QNN++NN +++ ++   +  +K ++  II+           YK+      T+TL+T   +
Sbjct: 221 QNNNINNNMYIESMTSENNKKKLKEKNIIYLSSLEGKKKKMYKKYRNDQDTSTLYTHNNN 280

Query: 250 SSNS 239
           ++N+
Sbjct: 281 NNNN 284


>tr|B4P842|B4P842_DROYA GE12834 OS=Drosophila yakuba GN=GE12834 PE=4
           SV=1
          Length = 530

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 25/101 (24%), Positives = 48/101 (47%)
 Frame = -1

Query: 481 QPSFLYLKI**QEPKDAQNNSLNNPVFMLALERSSKGQKERQLKIIFQKESRPSSLGGYK 302
           Q S +++++  Q+ ++         V  L LER  + Q+ER+LK+  ++ S  +++   +
Sbjct: 349 QLSRMHVELCQQQAQEEHEEDRIEQVQQLELERELERQRERELKVQQERASEAAAIAASE 408

Query: 301 RSNQSLVTATLFTRERSSSNSPLR*KTTHAPSAPIETSKVL 179
              Q + T    T   SSSN+ +   T     +P E  + L
Sbjct: 409 DEGQLVETIDTTTIITSSSNTSICMTTLLRKDSPRELEQPL 449