DK944545 |
Clone id |
YMU02A01NGRL0006_G18 |
Library |
YMU02 |
Length |
527 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_G18. 5' end sequence. |
Accession |
DK944545 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2598Contig1 |
Sequence |
CAGCAAAGTGTTCAAAATTCAGGAGGATGGAAGTCTTTTCCAGACCCCGCTCCCAACAAT AAAGGGAAGCCCATTGCGAGGAGGCCCGCAAATGATACAGCTTATCCTTGATGGAAAGCG CCTGTATGCAACCAATTCTTTGTTTAGTGCTTGGGACAAGCAGTTTTATCCTGAACTTGT TGCGCAAGGATCGTATATGCTGCAAATTGACTGTGATACAGAAAAAGGAGGCTTGTCTAT CAATGAGAACTTTTTTGTAGATTTTGGAAAGGAGCCAGGTGGGCCTGCCCTTGCCCATGA GGTGCGCTATCCGGGCGGGGACTGCACATCTGACATCTGGGTGTAGAGTCGGTTATGTAG ATGAAACTTCTGATTGCTATCGACAATACTGTACATTATATGTAAATAAGGTCATCTTTG GGTACTCGAGAAATTCATGAGGATTGAATTCTTTGACATTATTTGAAATATGTGAAGTAA AATTATACCTTTGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O23264 |
Definition |
sp|O23264|SBP_ARATH Putative selenium-binding protein OS=Arabidopsis thaliana |
Align length |
114 |
Score (bit) |
182.0 |
E-value |
1.0e-45 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944545|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_G18, 5' (493 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O23264|SBP_ARATH Putative selenium-binding protein OS=Arabido... 182 1e-45 sp|Q569D5|SBP1_XENTR Selenium-binding protein 1 OS=Xenopus tropi... 166 7e-41 sp|Q5RF48|SBP1_PONAB Selenium-binding protein 1 OS=Pongo abelii ... 162 1e-39 sp|Q13228|SBP1_HUMAN Selenium-binding protein 1 OS=Homo sapiens ... 161 1e-39 sp|P17563|SBP1_MOUSE Selenium-binding protein 1 OS=Mus musculus ... 161 2e-39 sp|Q6DCH7|SBP1B_XENLA Selenium-binding protein 1-B OS=Xenopus la... 161 2e-39 sp|Q52KZ7|SBP1A_XENLA Selenium-binding protein 1-A OS=Xenopus la... 160 2e-39 sp|Q8VIF7|SBP1_RAT Selenium-binding protein 1 OS=Rattus norvegic... 159 9e-39 sp|Q63836|SBP2_MOUSE Selenium-binding protein 2 OS=Mus musculus ... 158 1e-38 sp|Q2KJ32|SBP1_BOVIN Selenium-binding protein 1 OS=Bos taurus GN... 157 3e-38 sp|Q6PHD9|SBP1_DANRE Selenium-binding protein 1 OS=Danio rerio G... 136 5e-32 sp|Q21950|SBP_CAEEL Putative selenium-binding protein OS=Caenorh... 72 2e-12 sp|A8AC29|VATA_IGNH4 V-type ATP synthase alpha chain OS=Ignicocc... 31 3.5 sp|Q5GRV1|FENR_WOLTR Ferredoxin--NADP reductase OS=Wolbachia sp.... 30 4.6 sp|Q9PLD1|UVRC_CHLMU UvrABC system protein C OS=Chlamydia murida... 30 7.9 sp|P38989|SMC2_YEAST Structural maintenance of chromosomes prote... 30 7.9
>sp|O23264|SBP_ARATH Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1 Length = 490
Score = 182 bits (461), Expect = 1e-45 Identities = 83/114 (72%), Positives = 98/114 (85%) Frame = +2
Query: 2 SKVFKIQEDGSLFQTPLPTIKGSPLRGGPQMIQLILDGKRLYATNSLFSAWDKQFYPELV 181 S V + EDG+ FQ +P IKG LRGGPQMIQL LDGKRLYATNSLFSAWD+QFYPE++ Sbjct: 377 SPVKAVGEDGNTFQFEVPQIKGKSLRGGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIM 436
Query: 182 AQGSYMLQIDCDTEKGGLSINENFFVDFGKEPGGPALAHEVRYPGGDCTSDIWV 343 +GS+++QID DTEKGGL+IN +FFVDFG EP GP+LAHE+RYPGGDCTSDIW+ Sbjct: 437 EKGSHIIQIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490
>sp|Q569D5|SBP1_XENTR Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1 Length = 472
Score = 166 bits (419), Expect = 7e-41 Identities = 78/110 (70%), Positives = 88/110 (80%), Gaps = 1/110 (0%) Frame = +2
Query: 17 IQEDGSLFQTPLPTI-KGSPLRGGPQMIQLILDGKRLYATNSLFSAWDKQFYPELVAQGS 193 + ED L P P I KG + GGPQMIQL LDGKRLY TNSL+S WDKQFYP+++ +GS Sbjct: 363 VLEDKDLECQPDPVIVKGKKVPGGPQMIQLSLDGKRLYVTNSLYSKWDKQFYPDMIKEGS 422
Query: 194 YMLQIDCDTEKGGLSINENFFVDFGKEPGGPALAHEVRYPGGDCTSDIWV 343 MLQID DTEKGGL +N NF VDFGKEPGGP LAHE+RYPGGDC+SDIWV Sbjct: 423 VMLQIDVDTEKGGLKLNPNFLVDFGKEPGGPVLAHELRYPGGDCSSDIWV 472
>sp|Q5RF48|SBP1_PONAB Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1 Length = 472
Score = 162 bits (409), Expect = 1e-39 Identities = 75/111 (67%), Positives = 88/111 (79%), Gaps = 1/111 (0%) Frame = +2
Query: 14 KIQEDGSLFQTPLP-TIKGSPLRGGPQMIQLILDGKRLYATNSLFSAWDKQFYPELVAQG 190 ++ ED L P P +KG + GGPQMIQL LDGKRLY T SL+SAWDKQFYP+L+ +G Sbjct: 362 QVLEDQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIREG 421
Query: 191 SYMLQIDCDTEKGGLSINENFFVDFGKEPGGPALAHEVRYPGGDCTSDIWV 343 S MLQ+D DT KGGL +N NF VDFGKEP GPALAHE+RYPGGDC+SDIW+ Sbjct: 422 SVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
>sp|Q13228|SBP1_HUMAN Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2 Length = 472
Score = 161 bits (408), Expect = 1e-39 Identities = 75/111 (67%), Positives = 88/111 (79%), Gaps = 1/111 (0%) Frame = +2
Query: 14 KIQEDGSLFQTPLP-TIKGSPLRGGPQMIQLILDGKRLYATNSLFSAWDKQFYPELVAQG 190 ++ ED L P P +KG + GGPQMIQL LDGKRLY T SL+SAWDKQFYP+L+ +G Sbjct: 362 QVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREG 421
Query: 191 SYMLQIDCDTEKGGLSINENFFVDFGKEPGGPALAHEVRYPGGDCTSDIWV 343 S MLQ+D DT KGGL +N NF VDFGKEP GPALAHE+RYPGGDC+SDIW+ Sbjct: 422 SVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
>sp|P17563|SBP1_MOUSE Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2 Length = 472
Score = 161 bits (407), Expect = 2e-39 Identities = 76/111 (68%), Positives = 88/111 (79%), Gaps = 1/111 (0%) Frame = +2
Query: 14 KIQEDGSLFQTPLP-TIKGSPLRGGPQMIQLILDGKRLYATNSLFSAWDKQFYPELVAQG 190 ++ ED L P P +KG + GGPQMIQL LDGKRLYAT SL+SAWDKQFYP+L+ +G Sbjct: 362 QVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSAWDKQFYPDLIREG 421
Query: 191 SYMLQIDCDTEKGGLSINENFFVDFGKEPGGPALAHEVRYPGGDCTSDIWV 343 S MLQID DT GGL +N NF VDFGKEP GPALAHE+RYPGGDC+SDIW+ Sbjct: 422 SMMLQIDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
>sp|Q6DCH7|SBP1B_XENLA Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1 Length = 472
Score = 161 bits (407), Expect = 2e-39 Identities = 73/110 (66%), Positives = 89/110 (80%), Gaps = 1/110 (0%) Frame = +2
Query: 17 IQEDGSLFQTPLP-TIKGSPLRGGPQMIQLILDGKRLYATNSLFSAWDKQFYPELVAQGS 193 +QED L P P T+KG + GGPQMIQL LDGKR+Y T+S++S WDKQFYP+++ +G+ Sbjct: 363 VQEDKELECQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSIYSIWDKQFYPDMLKEGA 422
Query: 194 YMLQIDCDTEKGGLSINENFFVDFGKEPGGPALAHEVRYPGGDCTSDIWV 343 MLQID DTEKGGL +N NF VDFGKEP GP LAHE+RYPGGDC+SDIW+ Sbjct: 423 VMLQIDVDTEKGGLKLNPNFLVDFGKEPDGPVLAHELRYPGGDCSSDIWI 472
>sp|Q52KZ7|SBP1A_XENLA Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1 Length = 472
Score = 160 bits (406), Expect = 2e-39 Identities = 74/110 (67%), Positives = 88/110 (80%), Gaps = 1/110 (0%) Frame = +2
Query: 17 IQEDGSLFQTPLP-TIKGSPLRGGPQMIQLILDGKRLYATNSLFSAWDKQFYPELVAQGS 193 + ED L P P T+KG + GGPQMIQL LDGKR+Y T+SL+S WDKQFYP+L+ +G+ Sbjct: 363 VLEDKELECQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSLYSIWDKQFYPDLLKEGA 422
Query: 194 YMLQIDCDTEKGGLSINENFFVDFGKEPGGPALAHEVRYPGGDCTSDIWV 343 MLQID DT+KGGL +N NF VDFGKEP GP LAHE+RYPGGDCTSDIW+ Sbjct: 423 VMLQIDVDTKKGGLKLNPNFLVDFGKEPDGPVLAHEIRYPGGDCTSDIWI 472
>sp|Q8VIF7|SBP1_RAT Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1 Length = 472
Score = 159 bits (401), Expect = 9e-39 Identities = 75/111 (67%), Positives = 86/111 (77%), Gaps = 1/111 (0%) Frame = +2
Query: 14 KIQEDGSLFQTPLP-TIKGSPLRGGPQMIQLILDGKRLYATNSLFSAWDKQFYPELVAQG 190 ++ ED L P P +KG + GGPQMIQL LDGKRLY T SL+SAWDKQFYP L+ +G Sbjct: 362 QVLEDQELTCQPEPLVVKGKRVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPNLIREG 421
Query: 191 SYMLQIDCDTEKGGLSINENFFVDFGKEPGGPALAHEVRYPGGDCTSDIWV 343 S MLQID DT GGL +N NF VDFGKEP GPALAHE+RYPGGDC+SDIW+ Sbjct: 422 SVMLQIDVDTANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
>sp|Q63836|SBP2_MOUSE Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2 Length = 472
Score = 158 bits (400), Expect = 1e-38 Identities = 74/111 (66%), Positives = 87/111 (78%), Gaps = 1/111 (0%) Frame = +2
Query: 14 KIQEDGSLFQTPLP-TIKGSPLRGGPQMIQLILDGKRLYATNSLFSAWDKQFYPELVAQG 190 ++ ED L P P +KG + GGPQMIQL LDGKRLYAT SL+S WDKQFYP+L+ +G Sbjct: 362 QVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSDWDKQFYPDLIREG 421
Query: 191 SYMLQIDCDTEKGGLSINENFFVDFGKEPGGPALAHEVRYPGGDCTSDIWV 343 S MLQ+D DT GGL +N NF VDFGKEP GPALAHE+RYPGGDC+SDIW+ Sbjct: 422 SVMLQVDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
>sp|Q2KJ32|SBP1_BOVIN Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1 Length = 472
Score = 157 bits (396), Expect = 3e-38 Identities = 74/111 (66%), Positives = 87/111 (78%), Gaps = 1/111 (0%) Frame = +2
Query: 14 KIQEDGSLFQTPLP-TIKGSPLRGGPQMIQLILDGKRLYATNSLFSAWDKQFYPELVAQG 190 ++ ED L P P +KG + GGPQMIQL LDG RLY T SL+SAWDKQFYP+L+ +G Sbjct: 362 QVLEDQELKCQPEPLVVKGKRVAGGPQMIQLSLDGTRLYVTTSLYSAWDKQFYPDLIREG 421
Query: 191 SYMLQIDCDTEKGGLSINENFFVDFGKEPGGPALAHEVRYPGGDCTSDIWV 343 S MLQID DT +GGL +N NF VDFGKEP GPALAHE+RYPGGDC+SDIW+ Sbjct: 422 SVMLQIDVDTVRGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8S2S4 |
Definition |
tr|Q8S2S4|Q8S2S4_THEHA Putative selenium-binding protein OS=Thellungiella halophila |
Align length |
114 |
Score (bit) |
186.0 |
E-value |
7.0e-46 |
Report |
|