DK944549 [AcEST]

DK944549
Clone id	YMU02A01NGRL0006_G22
Library	YMU02
Length	284
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_G22. 5' end sequence.
Accession	DK944549
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	-
Sequence	GTCACCCCATAATCTGGATTTAACTGCCTTCTAGACCTAATTTTTCAGCATCATGTAATA ATGACAATGACTTTTCCTGACAATCATGTACCAATGCAGAACTGTCGATTACAGAGAATC CAGCTGATTGCCTAGGACTACTATATGATAAGCTCCATCAACAAAGTGAATTCCACATGT ATGGTACGGATGGTTTTTCTAAGCCTAACTCTAAACAGTGGATTTCATATCTCTAGATAG AGAAGCTCTCTCTTCCCTTTCAATTTAGTGAAATAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	P91573
Definition	sp\|P91573\|WRT6_CAEEL Warthog protein 6 OS=Caenorhabditis elegans
Align length	39
Score (bit)	29.6
E-value	4.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK944549\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_G22, 5' (270 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|P91573\|WRT6_CAEEL Warthog protein 6 OS=Caenorhabditis elegans... 30 4.9 sp\|P33124\|ACSL6_RAT Long-chain-fatty-acid--CoA ligase 6 OS=Rattu... 29 6.4 sp\|Q91WC3\|ACSL6_MOUSE Long-chain-fatty-acid--CoA ligase 6 OS=Mus... 29 6.4 >sp\|P91573\|WRT6_CAEEL Warthog protein 6 OS=Caenorhabditis elegans GN=wrt-6 PE=1 SV=2 Length = 593 Score = 29.6 bits (65), Expect = 4.9 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -3 Query: 229 YEIHCLELGLEKPSVPYMWNSLCWSLSYSSPRQSAGFS 113 YE + K +PY N+L W L YSSP++S F+ Sbjct: 234 YEFRVVRRPFRKSRLPYNENAL--WPLQYSSPQRSRTFA 270 >sp\|P33124\|ACSL6_RAT Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1 Length = 697 Score = 29.3 bits (64), Expect = 6.4 Identities = 17/44 (38%), Positives = 20/44 (45%) Frame = -3 Query: 208 LGLEKPSVPYMWNSLCWSLSYSSPRQSAGFSVIDSSALVHDCQ 77 LG KP PY W LSY + A F + S L HDC+ Sbjct: 109 LGFRKPEQPYQW-------LSYQEVAKRAEF--LGSGLLQHDCK 143 >sp\|Q91WC3\|ACSL6_MOUSE Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1 Length = 697 Score = 29.3 bits (64), Expect = 6.4 Identities = 17/44 (38%), Positives = 20/44 (45%) Frame = -3 Query: 208 LGLEKPSVPYMWNSLC*WSLSYSSPRQSAGFSVIDSSALVHDCQ 77 LG KP PY W LSY + A F + S L HDC+ Sbjct: 109 LGFRKPEQPYQW-------LSYQEVAKRAEF--LGSGLLQHDCK 143
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	B6LI15
Definition	tr\|B6LI15\|B6LI15_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length	70
Score (bit)	35.0
E-value	1.8
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK944549\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0006_G22, 5' (270 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|B6LI15\|B6LI15_BRAFL Putative uncharacterized protein OS=Branc... 35 1.8 >tr\|B6LI15\|B6LI15_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_206663 PE=4 SV=1 Length = 411 Score = 35.0 bits (79), Expect = 1.8 Identities = 22/70 (31%), Positives = 39/70 (55%) Frame = +1 Query: 58 IMTMTFPDNHVPMQNCRLQRIQLIADYYMISSINKVNSTCMVRMVFLSLTLNSGFHISR 237 I++++ +HV ++ +Q+ Q I D+ +++S+N + CMVR SL N HI Sbjct: 149 IVSLSSQSHHVGAESSSVQKPQAI--DHVVVASLNHHDQICMVRQ---SLINNETSHIDH 203 Query: 238 RSSLFPFNL 267 +S PF+L Sbjct: 204 TSTSNLPFSL 213