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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944555
Clone id YMU02A01NGRL0006_H04
Library
Length 256
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_H04. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTGTCTTTCAGAAAAGCTACAGAAGCTGGAAAGTGAGAAGGCTGCATTGCTGCAGCGGAA
TGAAAGACTTCAGACAGATCTTGGCCTGCTCACGAAGAGTATGAAAGATCTTGATGATTC
AATGAGGCACAATCACTGCTTGATTGTGAGGTACTTTCTAAGCTTTAATTATCAAAAGAG
ACCGTTTACATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P44035
Definition sp|P44035|FTSB_HAEIN Cell division protein ftsB homolog OS=Haemophilus influenzae
Align length 46
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944555|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H04, 5'
         (193 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P44035|FTSB_HAEIN Cell division protein ftsB homolog OS=Haemo...    33   0.34 
sp|A5UHG2|FTSB_HAEIG Cell division protein ftsB homolog OS=Haemo...    33   0.34 
sp|A5UE58|FTSB_HAEIE Cell division protein ftsB homolog OS=Haemo...    33   0.34 
sp|Q4QMP3|FTSB_HAEI8 Cell division protein ftsB homolog OS=Haemo...    33   0.34 
sp|P58301|RAD50_PYRFU DNA double-strand break repair rad50 ATPas...    32   1.3  
sp|P34552|ALX1_CAEEL Apoptosis-linked gene 2-interacting protein...    31   1.7  
sp|P15533|TRI30_MOUSE Tripartite motif-containing protein 30 OS=...    30   5.0  
sp|Q8IUG5|MY18B_HUMAN Myosin-XVIIIb OS=Homo sapiens GN=MYO18B PE...    30   5.0  
sp|A6LHS1|IF2_PARD8 Translation initiation factor IF-2 OS=Paraba...    30   5.0  
sp|Q5UQ55|YL711_MIMIV Uncharacterized protein L711 OS=Acanthamoe...    29   6.5  
sp|Q09857|YAF3_SCHPO Uncharacterized protein C29E6.03c OS=Schizo...    29   6.5  
sp|Q8MJV1|MYH2_HORSE Myosin-2 OS=Equus caballus GN=MYH2 PE=2 SV=1      29   6.5  
sp|A5DSB5|SQS1_LODEL Protein SQS1 OS=Lodderomyces elongisporus G...    29   8.5  
sp|Q5RI56|OPTN_DANRE Optineurin OS=Danio rerio GN=optn PE=2 SV=2       29   8.5  
sp|P02562|MYSS_RABIT Myosin heavy chain, skeletal muscle (Fragme...    29   8.5  
sp|Q29RW1|MYH4_RAT Myosin-4 OS=Rattus norvegicus GN=Myh4 PE=2 SV=1     29   8.5  
sp|Q28641|MYH4_RABIT Myosin-4 OS=Oryctolagus cuniculus GN=MYH4 P...    29   8.5  
sp|Q9TV62|MYH4_PIG Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1            29   8.5  
sp|Q5SX39|MYH4_MOUSE Myosin-4 OS=Mus musculus GN=Myh4 PE=2 SV=1        29   8.5  
sp|Q9Y623|MYH4_HUMAN Myosin-4 OS=Homo sapiens GN=MYH4 PE=1 SV=2        29   8.5  
sp|Q076A5|MYH4_CANFA Myosin-4 OS=Canis familiaris GN=MYH4 PE=3 SV=1    29   8.5  
sp|Q076A7|MYH2_CANFA Myosin-2 OS=Canis familiaris GN=MYH2 PE=3 SV=1    29   8.5  
sp|Q9TV61|MYH1_PIG Myosin-1 OS=Sus scrofa GN=MYH1 PE=2 SV=1            29   8.5  
sp|Q5SX40|MYH1_MOUSE Myosin-1 OS=Mus musculus GN=Myh1 PE=1 SV=1        29   8.5  
sp|P12882|MYH1_HUMAN Myosin-1 OS=Homo sapiens GN=MYH1 PE=1 SV=2        29   8.5  
sp|Q8MJV0|MYH1_HORSE Myosin-1 OS=Equus caballus GN=MYH1 PE=2 SV=1      29   8.5  
sp|Q076A6|MYH1_CANFA Myosin-1 OS=Canis familiaris GN=MYH1 PE=3 SV=2    29   8.5  

>sp|P44035|FTSB_HAEIN Cell division protein ftsB homolog
           OS=Haemophilus influenzae GN=ftsB PE=3 SV=1
          Length = 92

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCLI 145
           +EK+++ ++E   L QRN+R+  ++  LTK  + +++  R  H L+
Sbjct: 33  AEKIKENQAENEKLSQRNQRINAEIQGLTKGFEAIEERARMQHGLV 78


>sp|A5UHG2|FTSB_HAEIG Cell division protein ftsB homolog
           OS=Haemophilus influenzae (strain PittGG) GN=ftsB PE=3
           SV=1
          Length = 92

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCLI 145
           +EK+++ ++E   L QRN+R+  ++  LTK  + +++  R  H L+
Sbjct: 33  AEKIKENQAENEKLSQRNQRINAEIQGLTKGFEAIEERARMQHGLV 78


>sp|A5UE58|FTSB_HAEIE Cell division protein ftsB homolog
           OS=Haemophilus influenzae (strain PittEE) GN=ftsB PE=3
           SV=1
          Length = 92

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCLI 145
           +EK+++ ++E   L QRN+R+  ++  LTK  + +++  R  H L+
Sbjct: 33  AEKIKENQAENEKLSQRNQRINAEIQGLTKGFEAIEERARMQHGLV 78


>sp|Q4QMP3|FTSB_HAEI8 Cell division protein ftsB homolog
           OS=Haemophilus influenzae (strain 86-028NP) GN=ftsB PE=3
           SV=1
          Length = 92

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCLI 145
           +EK+++ ++E   L QRN+R+  ++  LTK  + +++  R  H L+
Sbjct: 33  AEKIKENQAENEKLSQRNQRINAEIQGLTKGFEAIEERARMQHGLV 78


>sp|P58301|RAD50_PYRFU DNA double-strand break repair rad50 ATPase
           OS=Pyrococcus furiosus GN=rad50 PE=1 SV=1
          Length = 882

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
 Frame = +2

Query: 11  EKLQKLESEKAALLQRNERLQTDLGLLT--------KSMKDLDDSMRHNHCLIVRYFLSF 166
           +KL  LE + AAL+ + + L+ +L  L         KS++DLD  +R    +  RY    
Sbjct: 552 KKLAPLEKKLAALIHKKQELEKELKELNTKLESFGFKSVEDLDSKLRELEEIYKRYLTLL 611

Query: 167 NYQK 178
           N +K
Sbjct: 612 NSKK 615


>sp|P34552|ALX1_CAEEL Apoptosis-linked gene 2-interacting protein X
           1 OS=Caenorhabditis elegans GN=alx-1 PE=2 SV=3
          Length = 882

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMR 127
           S ++ +L SE   L QRNE + T+   +    K+ DD+MR
Sbjct: 437 SSEIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMR 476


>sp|P15533|TRI30_MOUSE Tripartite motif-containing protein 30 OS=Mus
           musculus GN=Trim30 PE=1 SV=2
          Length = 496

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHN 133
           +E+LQKL+ EK  ++++ E  + +L   T+ ++DL   + H+
Sbjct: 198 NEELQKLKKEKKEVMEKLEESENELEDQTELVRDLISDVEHH 239


>sp|Q8IUG5|MY18B_HUMAN Myosin-XVIIIb OS=Homo sapiens GN=MYO18B PE=1
            SV=1
          Length = 2567

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 5    LSEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDL 112
            + E+L +L+ EKA LL+R +  Q DL  L +  KDL
Sbjct: 1878 VDEQLYRLQFEKADLLKRIDEDQDDLNELMQKHKDL 1913


>sp|A6LHS1|IF2_PARD8 Translation initiation factor IF-2
           OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
           20701 / NCTC 11152) GN=infB PE=3 SV=1
          Length = 973

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 29  ESEKAALLQRNERLQTDLGLLTKSMKDLDD 118
           E E   +  R E+LQ +LGL T+ M  LDD
Sbjct: 731 EQEAREIANRREQLQRELGLRTQKMLTLDD 760


>sp|Q5UQ55|YL711_MIMIV Uncharacterized protein L711 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_L711 PE=4 SV=1
          Length = 374

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +2

Query: 11  EKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCLIVRYFLSFNY 172
           EKL KL SE+ +L ++  +L  +        KD++ SM +N    +   LSFNY
Sbjct: 300 EKLLKLHSEQKSLSEKINKLSGE--------KDIEQSMINNEIYKLVTGLSFNY 345
tr_hit_id A8BED1
Definition tr|A8BED1|A8BED1_GIALA Spindle pole protein, putative OS=Giardia lamblia ATCC 50803
Align length 40
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944555|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H04, 5'
         (193 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8BED1|A8BED1_GIALA Spindle pole protein, putative OS=Giardia...    34   4.2  
tr|A4P1B2|A4P1B2_HAEIN Cell divison protein FtsB (Fragment) OS=H...    33   5.5  
tr|A4NSY6|A4NSY6_HAEIN Cell divison protein FtsB OS=Haemophilus ...    33   5.5  
tr|A4NP10|A4NP10_HAEIN Cell divison protein FtsB OS=Haemophilus ...    33   5.5  
tr|A4NH66|A4NH66_HAEIN Cell divison protein FtsB OS=Haemophilus ...    33   5.5  
tr|A4NCT3|A4NCT3_HAEIN Cell divison protein FtsB OS=Haemophilus ...    33   5.5  
tr|A4N764|A4N764_HAEIN Cell divison protein FtsB (Fragment) OS=H...    33   5.5  
tr|Q6LSV3|Q6LSV3_PHOPR Sensor protein OS=Photobacterium profundu...    33   7.1  
tr|B7TK81|B7TK81_9HEXA 40 kDa protein OS=Isotomurus maculatus PE...    33   9.3  

>tr|A8BED1|A8BED1_GIALA Spindle pole protein, putative OS=Giardia
           lamblia ATCC 50803 GN=GL50803_21444 PE=4 SV=1
          Length = 588

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 5   LSEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSM 124
           L EKL K E E  A  ++   LQTD G+L+K + +L D++
Sbjct: 72  LREKLDKAEEEHLAFREQIALLQTDNGILSKDVMELTDTI 111


>tr|A4P1B2|A4P1B2_HAEIN Cell divison protein FtsB (Fragment)
           OS=Haemophilus influenzae 22.4-21 GN=ftsB PE=4 SV=1
          Length = 122

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCLI 145
           +EK+++ ++E   L QRN+R+  ++  LTK  + +++  R  H L+
Sbjct: 63  AEKIKENQAENEKLSQRNQRINAEIQGLTKGFEAIEERARMQHGLV 108


>tr|A4NSY6|A4NSY6_HAEIN Cell divison protein FtsB OS=Haemophilus
           influenzae PittII GN=ftsB PE=4 SV=1
          Length = 92

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCLI 145
           +EK+++ ++E   L QRN+R+  ++  LTK  + +++  R  H L+
Sbjct: 33  AEKIKENQAENEKLSQRNQRINAEIQGLTKGFEAIEERARMQHGLV 78


>tr|A4NP10|A4NP10_HAEIN Cell divison protein FtsB OS=Haemophilus
           influenzae PittHH GN=ftsB PE=4 SV=1
          Length = 92

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCLI 145
           +EK+++ ++E   L QRN+R+  ++  LTK  + +++  R  H L+
Sbjct: 33  AEKIKENQAENEKLSQRNQRINAEIQGLTKGFEAIEERARMQHGLV 78


>tr|A4NH66|A4NH66_HAEIN Cell divison protein FtsB OS=Haemophilus
           influenzae PittAA GN=ftsB PE=4 SV=1
          Length = 92

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCLI 145
           +EK+++ ++E   L QRN+R+  ++  LTK  + +++  R  H L+
Sbjct: 33  AEKIKENQAENEKLSQRNQRINAEIQGLTKGFEAIEERARMQHGLV 78


>tr|A4NCT3|A4NCT3_HAEIN Cell divison protein FtsB OS=Haemophilus
           influenzae 3655 GN=ftsB PE=4 SV=1
          Length = 92

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCLI 145
           +EK+++ ++E   L QRN+R+  ++  LTK  + +++  R  H L+
Sbjct: 33  AEKIKENQAENEKLSQRNQRINAEIQGLTKGFEAIEERARMQHGLV 78


>tr|A4N764|A4N764_HAEIN Cell divison protein FtsB (Fragment)
           OS=Haemophilus influenzae R3021 GN=ftsB PE=4 SV=1
          Length = 115

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +2

Query: 8   SEKLQKLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCLI 145
           +EK+++ ++E   L QRN+R+  ++  LTK  + +++  R  H L+
Sbjct: 56  AEKIKENQAENEKLSQRNQRINAEIQGLTKGFEAIEERARMQHGLV 101


>tr|Q6LSV3|Q6LSV3_PHOPR Sensor protein OS=Photobacterium profundum
           GN=VP1245 PE=4 SV=1
          Length = 644

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +2

Query: 23  KLESEKAALLQRNERLQTDLGLLTKSMKDLDDSMRHNHCL 142
           +L +  +A+L+ +E LQ  +G LT+S  DL++  R NH L
Sbjct: 352 ELNNPVSAILRGSETLQETIGKLTESKLDLENQRRGNHIL 391


>tr|B7TK81|B7TK81_9HEXA 40 kDa protein OS=Isotomurus maculatus PE=2
           SV=1
          Length = 411

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
 Frame = +2

Query: 5   LSEKLQKLESEKAALLQRNERLQT--DLGLLTKSMK----DLDDSMRHNHCLIVRY 154
           + E + KLESEK  LL+R E L++  D  +L + ++    +L  + +HN  +I RY
Sbjct: 270 MRETIHKLESEKVVLLRRIEELESTGDAEVLRREIEKLKVELTGTRKHNQDIINRY 325