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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944558
Clone id YMU02A01NGRL0006_H07
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_H07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TTTCCTCCGGAAGGGCAGCTCCACTTCTCTGATGGGCGGTGGTGCTGCCGGCTCGCTTCT
GCTTCTCGCAGGTTATCTCAGCTTGCAGGCCTTTAAGAAACATGAGAACTCCTACTTCGC
ATTTCTACTGGAGACAGCTATTTCAGTAGGTCTGACTTGGGTAATGGGACAGCGGTATCA
AGCCAGTGGAAAGATAATGCCAGCTGGAATGGTGGCGGTTATCAGTGGGGTCATGGCGTT
GTTCTATTTGTACAAGCTATCTATGGGTGGAAACCACATTGTCAAGAGACACGAATGACA
ATTAGGCAAAGCTCAGCTCAGAACTCCTGTTATTGTAGATTTAATGAGAAACAACAATAA
AACCTGCTATTATCACATGATCATGTCTCAAATAACAGTGTCAAAAGTGGAGATGGCATC
TAAATCAACGAGCAATGGTTTTGGACTCTCTTTCTGTACGTTTCTTCAGTTCAGTCGTTT
TTTTAAAAACTAGTTAATCGTCAGGAATTGGGTTCTGGTGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O64847
Definition sp|O64847|U136_ARATH UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana
Align length 39
Score (bit) 38.9
E-value 0.014
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944558|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H07, 5'
         (504 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O64847|U136_ARATH UPF0136 membrane protein At2g26240 OS=Arabi...    39   0.014
sp|Q9W1K0|U136_DROME UPF0136 membrane protein CG5532 OS=Drosophi...    37   0.053
sp|Q9SFB8|PI5K6_ARATH Phosphatidylinositol-4-phosphate 5-kinase ...    33   0.58 
sp|P56984|TM14A_PIG Transmembrane protein 14A OS=Sus scrofa GN=T...    33   1.00 
sp|Q9Y6G1|TM14A_HUMAN Transmembrane protein 14A OS=Homo sapiens ...    33   1.00 
sp|P56982|TM14A_BOVIN Transmembrane protein 14A OS=Bos taurus GN...    33   1.00 
sp|P56983|TM14A_MOUSE Transmembrane protein 14A OS=Mus musculus ...    32   1.3  
sp|Q54PA8|Y2080_DICDI Uncharacterized protein DDB_G0284671 OS=Di...    32   1.7  
sp|Q924P2|TM14C_RAT Transmembrane protein 14C OS=Rattus norvegic...    32   1.7  
sp|Q5R751|TM14C_PONAB Transmembrane protein 14C OS=Pongo abelii ...    32   1.7  
sp|Q9CQN6|TM14C_MOUSE Transmembrane protein 14C OS=Mus musculus ...    32   1.7  
sp|Q9P0S9|TM14C_HUMAN Transmembrane protein 14C OS=Homo sapiens ...    32   1.7  
sp|Q8N8P7|CK044_HUMAN Uncharacterized protein C11orf44 OS=Homo s...    30   6.4  
sp|Q24JP3|F178B_MOUSE Protein FAM178B OS=Mus musculus GN=Fam178b...    30   8.4  

>sp|O64847|U136_ARATH UPF0136 membrane protein At2g26240
           OS=Arabidopsis thaliana GN=At2g26240 PE=2 SV=1
          Length = 108

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 19/39 (48%), Positives = 27/39 (69%)
 Frame = +1

Query: 127 SVGLTWVMGQRYQASGKIMPAGMVAVISGVMALFYLYKL 243
           S  LT +MG RY  + K++PAG+V+V+S VM   YL+ L
Sbjct: 66  SAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLHGL 104


>sp|Q9W1K0|U136_DROME UPF0136 membrane protein CG5532 OS=Drosophila
           melanogaster GN=CG5532 PE=3 SV=1
          Length = 112

 Score = 37.0 bits (84), Expect = 0.053
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +1

Query: 109 LLETAISVGLTWVMGQRYQASGKIMPAGMVAVIS 210
           LL+   S+ L  +MG R+  SGK+MPAGMV ++S
Sbjct: 56  LLQLGTSLFLAGLMGARWNRSGKLMPAGMVCMLS 89


>sp|Q9SFB8|PI5K6_ARATH Phosphatidylinositol-4-phosphate 5-kinase 6
           OS=Arabidopsis thaliana GN=PIP5K6 PE=2 SV=1
          Length = 715

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 TGDSYFSRSDLGNGTAVSSQWKDNASWNGGGYQWGHG 221
           TG+SY +   L +G   + QW+DN     G Y W  G
Sbjct: 16  TGESYHAEKALPSGDFYTGQWRDNLPHGHGKYLWTDG 52


>sp|P56984|TM14A_PIG Transmembrane protein 14A OS=Sus scrofa
           GN=TMEM14A PE=3 SV=1
          Length = 99

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 136 LTWVMGQRYQASGKIMPAGMVAVISGVMAL 225
           L  +MG R++ S KIMPAG+VA +S +M L
Sbjct: 63  LATIMGVRFKRSKKIMPAGLVAGLSLLMIL 92


>sp|Q9Y6G1|TM14A_HUMAN Transmembrane protein 14A OS=Homo sapiens
           GN=TMEM14A PE=2 SV=1
          Length = 99

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 136 LTWVMGQRYQASGKIMPAGMVAVISGVMAL 225
           L  +MG R++ S KIMPAG+VA +S +M L
Sbjct: 63  LATIMGVRFKRSKKIMPAGLVAGLSLMMIL 92


>sp|P56982|TM14A_BOVIN Transmembrane protein 14A OS=Bos taurus
           GN=TMEM14A PE=3 SV=1
          Length = 99

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 136 LTWVMGQRYQASGKIMPAGMVAVISGVMAL 225
           L  +MG R++ S KIMPAG+VA +S +M L
Sbjct: 63  LATIMGVRFKRSKKIMPAGLVAGLSLLMIL 92


>sp|P56983|TM14A_MOUSE Transmembrane protein 14A OS=Mus musculus
           GN=Tmem14a PE=2 SV=2
          Length = 99

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +1

Query: 136 LTWVMGQRYQASGKIMPAGMVAVISGVMAL 225
           L  +MG R++ S K+MPAG+VA +S +M L
Sbjct: 63  LATIMGVRFKRSKKVMPAGLVAGLSLMMIL 92


>sp|Q54PA8|Y2080_DICDI Uncharacterized protein DDB_G0284671
           OS=Dictyostelium discoideum GN=DDB_G0284671 PE=4 SV=1
          Length = 305

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 21/83 (25%), Positives = 36/83 (43%)
 Frame = +3

Query: 42  SASRRLSQLAGXXXXXXXXXRISTGDSYFSRSDLGNGTAVSSQWKDNASWNGGGYQWGHG 221
           S ++   Q +G           S+G S  S S   +G++  S     +S +GGG   G G
Sbjct: 221 SGTQTSGQTSGQTGAQTGQSTASSGSSGSSGSSGSSGSSGGSSGSGGSSGSGGGSGSGSG 280

Query: 222 VVLFVQAIYGWKPHCQETRMTIR 290
           + + V   YG    C +  +++R
Sbjct: 281 MAVKVDKCYGTYCPCNKELLSVR 303


>sp|Q924P2|TM14C_RAT Transmembrane protein 14C OS=Rattus norvegicus
           GN=Tmem14c PE=3 SV=1
          Length = 115

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +1

Query: 121 AISVGLTWVMGQRYQASGKIMPAGMVAVISGVM 219
           A S  L  +MG R+  SGK MPAG++A  S +M
Sbjct: 68  ATSGTLAGIMGMRFYNSGKFMPAGLIAGASLLM 100


>sp|Q5R751|TM14C_PONAB Transmembrane protein 14C OS=Pongo abelii
           GN=TMEM14C PE=3 SV=1
          Length = 112

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +1

Query: 121 AISVGLTWVMGQRYQASGKIMPAGMVAVISGVM 219
           A S  L  +MG R+  SGK MPAG++A  S +M
Sbjct: 67  ATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLM 99
tr_hit_id A9NRF8
Definition tr|A9NRF8|A9NRF8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 70
Score (bit) 92.4
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944558|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H07, 5'
         (504 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NRF8|A9NRF8_PICSI Putative uncharacterized protein OS=Picea...    92   1e-17
tr|A7P0S6|A7P0S6_VITVI Chromosome chr19 scaffold_4, whole genome...    91   4e-17
tr|A9TER4|A9TER4_PHYPA Predicted protein OS=Physcomitrella paten...    86   1e-15
tr|B7FH11|B7FH11_MEDTR Putative uncharacterized protein OS=Medic...    82   1e-14
tr|A9PIM6|A9PIM6_POPJC Putative uncharacterized protein OS=Popul...    81   3e-14
tr|Q9AYA9|Q9AYA9_ORYSA Putative uncharacterized protein OSJNBa00...    80   4e-14
tr|Q10I13|Q10I13_ORYSJ Os03g0568500 protein OS=Oryza sativa subs...    80   4e-14
tr|B8AKU3|B8AKU3_ORYSI Putative uncharacterized protein OS=Oryza...    80   4e-14
tr|B6T8F3|B6T8F3_MAIZE Putative uncharacterized protein OS=Zea m...    79   9e-14
tr|Q9LJU6|Q9LJU6_ARATH Emb|CAB68134.1 (Putative uncharacterized ...    77   6e-13
tr|Q9C6T7|Q9C6T7_ARATH Putative uncharacterized protein F4M15.3 ...    75   1e-12
tr|A3AJN9|A3AJN9_ORYSJ Putative uncharacterized protein OS=Oryza...    68   2e-10
tr|A6MZR1|A6MZR1_ORYSI Putative uncharacterized protein (Fragmen...    64   3e-09
tr|Q6F2W8|Q6F2W8_ORYSJ Os03g0584300 protein OS=Oryza sativa subs...    63   9e-09
tr|B8B6N6|B8B6N6_ORYSI Putative uncharacterized protein OS=Oryza...    63   9e-09
tr|B8AL72|B8AL72_ORYSI Putative uncharacterized protein OS=Oryza...    63   9e-09
tr|B6U3V5|B6U3V5_MAIZE Putative uncharacterized protein OS=Zea m...    58   3e-07
tr|A9SYF6|A9SYF6_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.008
tr|A7PWL2|A7PWL2_VITVI Chromosome chr8 scaffold_34, whole genome...    43   0.010
tr|B4FD53|B4FD53_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.013
tr|Q7XQN3|Q7XQN3_ORYSJ Os04g0470300 protein OS=Oryza sativa subs...    42   0.022
tr|Q01JN1|Q01JN1_ORYSA OSIGBa0124N08.6 protein OS=Oryza sativa G...    42   0.022
tr|Q7XPM7|Q7XPM7_ORYSJ Os04g0653100 protein OS=Oryza sativa subs...    41   0.029
tr|A9RP37|A9RP37_PHYPA Predicted protein (Fragment) OS=Physcomit...    41   0.029
tr|A3AY48|A3AY48_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.029
tr|A2XYD6|A2XYD6_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.029
tr|B1N671|B1N671_SOLLC Putative uncharacterized protein OS=Solan...    41   0.037
tr|A8QC23|A8QC23_BRUMA Transmembrane protein 14C, putative OS=Br...    41   0.037
tr|A3AJY4|A3AJY4_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.049
tr|A8QC25|A8QC25_BRUMA Transmembrane protein 14C, putative OS=Br...    40   0.064

>tr|A9NRF8|A9NRF8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 119

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 43/70 (61%), Positives = 52/70 (74%)
 Frame = +1

Query: 70  QAFKKHENSYFAFLLETAISVGLTWVMGQRYQASGKIMPAGMVAVISGVMALFYLYKLSM 249
           +AF+K  NSYFA  L+T  S  LTWVMGQRY  + KIMPAG+V VIS +M LFYLYK++ 
Sbjct: 50  KAFEKRRNSYFAIFLQTVCSSALTWVMGQRYLTTSKIMPAGIVTVISAMMTLFYLYKIAK 109

Query: 250 GGNHIVKRHE 279
           GGNHI  + E
Sbjct: 110 GGNHIGPKKE 119


>tr|A7P0S6|A7P0S6_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027345001
           PE=4 SV=1
          Length = 119

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 42/70 (60%), Positives = 52/70 (74%)
 Frame = +1

Query: 70  QAFKKHENSYFAFLLETAISVGLTWVMGQRYQASGKIMPAGMVAVISGVMALFYLYKLSM 249
           +AFKK +NSY A +LET  +  LTWVMGQRY  + KIMPAG+VA IS +M  FYLYK++ 
Sbjct: 50  KAFKKKKNSYLALILETVCAAALTWVMGQRYMQTSKIMPAGIVAGISALMTTFYLYKIAT 109

Query: 250 GGNHIVKRHE 279
           GGNHI  + E
Sbjct: 110 GGNHIPTKAE 119


>tr|A9TER4|A9TER4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169659 PE=4 SV=1
          Length = 119

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 39/73 (53%), Positives = 53/73 (72%), Gaps = 6/73 (8%)
 Frame = +1

Query: 73  AFKKHEN------SYFAFLLETAISVGLTWVMGQRYQASGKIMPAGMVAVISGVMALFYL 234
           A+K H++      S  A  LET ++V LTWVMGQR+  + K MPAGMVA +SG+M+LFYL
Sbjct: 45  AYKSHQDYLRGSKSSLALFLETVVAVALTWVMGQRFMVTSKFMPAGMVAALSGIMSLFYL 104

Query: 235 YKLSMGGNHIVKR 273
           YK++ GGN I+K+
Sbjct: 105 YKVATGGNRIIKK 117


>tr|B7FH11|B7FH11_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 121

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 38/64 (59%), Positives = 47/64 (73%)
 Frame = +1

Query: 73  AFKKHENSYFAFLLETAISVGLTWVMGQRYQASGKIMPAGMVAVISGVMALFYLYKLSMG 252
           AF K +NSY A  +E   +  LTW+MGQRY  + KIMPAGM+A +S +M LFYLYKL+ G
Sbjct: 51  AFGKRKNSYLALAIEILCAGVLTWIMGQRYLQTSKIMPAGMIAGLSALMTLFYLYKLATG 110

Query: 253 GNHI 264
           GNHI
Sbjct: 111 GNHI 114


>tr|A9PIM6|A9PIM6_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=4 SV=1
          Length = 119

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 38/70 (54%), Positives = 51/70 (72%)
 Frame = +1

Query: 70  QAFKKHENSYFAFLLETAISVGLTWVMGQRYQASGKIMPAGMVAVISGVMALFYLYKLSM 249
           +AF+K +NS+    +ET  +  LT+VMGQRY  + KIMPAG+VA IS +M LFYLYK++ 
Sbjct: 50  KAFEKRKNSFLGLAIETVCAAILTFVMGQRYMQTSKIMPAGIVAGISALMTLFYLYKIAA 109

Query: 250 GGNHIVKRHE 279
           GGNHI  + E
Sbjct: 110 GGNHIPAKAE 119


>tr|Q9AYA9|Q9AYA9_ORYSA Putative uncharacterized protein
           OSJNBa0004B24.3 OS=Oryza sativa GN=OSJNBa0004B24.3 PE=4
           SV=1
          Length = 119

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 37/70 (52%), Positives = 51/70 (72%)
 Frame = +1

Query: 70  QAFKKHENSYFAFLLETAISVGLTWVMGQRYQASGKIMPAGMVAVISGVMALFYLYKLSM 249
           + F+K  NSY A  LET  ++ LT+VMGQRY  + KIMPAG+VA +S +M+ FYL+K++ 
Sbjct: 50  KTFEKRRNSYLALALETLCALALTYVMGQRYLETSKIMPAGVVAGLSALMSAFYLFKIAT 109

Query: 250 GGNHIVKRHE 279
           GGNHI  + E
Sbjct: 110 GGNHIPPKKE 119


>tr|Q10I13|Q10I13_ORYSJ Os03g0568500 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0568500 PE=4 SV=1
          Length = 119

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 37/70 (52%), Positives = 51/70 (72%)
 Frame = +1

Query: 70  QAFKKHENSYFAFLLETAISVGLTWVMGQRYQASGKIMPAGMVAVISGVMALFYLYKLSM 249
           + F+K  NSY A  LET  ++ LT+VMGQRY  + KIMPAG+VA +S +M+ FYL+K++ 
Sbjct: 50  KTFEKRRNSYLALALETLCALALTYVMGQRYLETSKIMPAGVVAGLSALMSAFYLFKIAT 109

Query: 250 GGNHIVKRHE 279
           GGNHI  + E
Sbjct: 110 GGNHIPPKKE 119


>tr|B8AKU3|B8AKU3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12299 PE=4 SV=1
          Length = 119

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 37/70 (52%), Positives = 51/70 (72%)
 Frame = +1

Query: 70  QAFKKHENSYFAFLLETAISVGLTWVMGQRYQASGKIMPAGMVAVISGVMALFYLYKLSM 249
           + F+K  NSY A  LET  ++ LT+VMGQRY  + KIMPAG+VA +S +M+ FYL+K++ 
Sbjct: 50  KTFEKRRNSYLALALETLCALALTYVMGQRYLETSKIMPAGVVAGLSALMSAFYLFKIAT 109

Query: 250 GGNHIVKRHE 279
           GGNHI  + E
Sbjct: 110 GGNHIPPKKE 119


>tr|B6T8F3|B6T8F3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 120

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 37/65 (56%), Positives = 49/65 (75%)
 Frame = +1

Query: 70  QAFKKHENSYFAFLLETAISVGLTWVMGQRYQASGKIMPAGMVAVISGVMALFYLYKLSM 249
           +AF+K  NSY A  LET  ++ LT+VMGQR+  + KIMPAG VA +S VM+ FYL+K++ 
Sbjct: 50  KAFQKRRNSYVALALETLCALALTYVMGQRFLETSKIMPAGAVAGLSAVMSAFYLFKIAT 109

Query: 250 GGNHI 264
           GGNHI
Sbjct: 110 GGNHI 114


>tr|Q9LJU6|Q9LJU6_ARATH Emb|CAB68134.1 (Putative uncharacterized
           protein At3g20510) (At3g20510) OS=Arabidopsis thaliana
           GN=At3g20510 PE=4 SV=1
          Length = 119

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 37/70 (52%), Positives = 50/70 (71%)
 Frame = +1

Query: 70  QAFKKHENSYFAFLLETAISVGLTWVMGQRYQASGKIMPAGMVAVISGVMALFYLYKLSM 249
           +AF+K +NS  A +L+T I+  LT VMGQRY  +GKIMPAG+VA IS +M  FY+YK++ 
Sbjct: 50  KAFEKKKNSTIAMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIAT 109

Query: 250 GGNHIVKRHE 279
           GGN    + E
Sbjct: 110 GGNKFPAKAE 119