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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944562
Clone id YMU02A01NGRL0006_H12
Library
Length 264
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_H12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTCAACCAGTGGGACGATGAGGGATAAGCTTCACCGTCGAGAGGGGAACAGCCCAGATCA
CCAGCTAAGGCCCCTAAATGACCGCTCAGTGGTAAAGGAGGTAGGAGTGCAAAGACAGCC
AGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGATCAAGC
GCTCTTGCGCCGAAGATGAGCGGGACTAAGCGGTCTGCCGAAGCTGTGGGATGTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q80WV7
Definition sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus
Align length 65
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944562|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H12, 5'
         (235 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus GN=MNCb...    31   2.2  
sp|Q96RK0|CIC_HUMAN Protein capicua homolog OS=Homo sapiens GN=C...    29   8.4  

>sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus
           GN=MNCb-4760 PE=2 SV=1
          Length = 648

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +1

Query: 34  PSRGEQPRSPAKAPK*PLSGKGGRSA-KTARRFA*KQPPLKECVIAH*SSALAPKMSGTK 210
           P+RG+  +SP  AP     G+GGR+A  TARR   ++   +       SSA AP+  G +
Sbjct: 354 PARGKDSQSPRSAPS--SQGRGGRAAGGTARRRRRRRRRRRSR-----SSANAPRRRGRR 406

Query: 211 RSAEA 225
           R+  A
Sbjct: 407 RTKPA 411


>sp|Q96RK0|CIC_HUMAN Protein capicua homolog OS=Homo sapiens GN=CIC
            PE=1 SV=2
          Length = 1608

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 4    NQWDDEG*ASPSRGEQPRSPAKAPK*PLSGKGGRSAKTARRFA*KQPPLKE 156
            + W   G    +RGE P  P+ AP  P    GG S  ++ R A   P  KE
Sbjct: 1274 SDWRVPGQGLENRGEPPTPPSPAPA-PAVAPGGSSESSSGRAAGDTPERKE 1323
tr_hit_id A6N1H4
Definition tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa subsp. indica
Align length 53
Score (bit) 100.0
E-value 5.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944562|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H12, 5'
         (235 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa s...   100   5e-20
tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medic...    95   2e-18
tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deino...    74   4e-12
tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deino...    74   4e-12
tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein OS=Burkh...    58   3e-07
tr|A1HM07|A1HM07_9FIRM Putative uncharacterized protein OS=Therm...    41   0.034
tr|Q0MX19|Q0MX19_ARAHY Leucine rich protein OS=Arachis hypogaea ...    35   1.9  
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    35   1.9  

>tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa
           subsp. indica PE=4 SV=1
          Length = 109

 Score =  100 bits (248), Expect = 5e-20
 Identities = 48/53 (90%), Positives = 49/53 (92%)
 Frame = +2

Query: 2   STSGTMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP*KSA 160
           S S TM DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP KSA
Sbjct: 57  SASETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA 109


>tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 102

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 44/49 (89%), Positives = 45/49 (91%)
 Frame = +2

Query: 2   STSGTMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP 148
           S S  M DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP
Sbjct: 54  SASEAMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP 102


>tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein
           OS=Deinococcus radiodurans GN=DR_0254 PE=4 SV=1
          Length = 139

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 35/49 (71%), Positives = 37/49 (75%)
 Frame = -2

Query: 210 LSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTTERSFRGLS 64
           LSP H RR     VSYYALF+GWLLL +PPGCLC  TS TTERSFR LS
Sbjct: 91  LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 139


>tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein
           OS=Deinococcus radiodurans GN=DR_2252 PE=4 SV=1
          Length = 133

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 35/49 (71%), Positives = 37/49 (75%)
 Frame = -2

Query: 210 LSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTTERSFRGLS 64
           LSP H RR     VSYYALF+GWLLL +PPGCLC  TS TTERSFR LS
Sbjct: 85  LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 133


>tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein
           OS=Burkholderia multivorans (strain ATCC 17616 / 249)
           GN=BMULJ_05092 PE=4 SV=1
          Length = 123

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = -2

Query: 210 LSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTT 88
           L+P HL R++  SVSYYA F+GWLLL +PP C   PTSF T
Sbjct: 83  LAPLHLPRRTTRSVSYYAFFKGWLLLSQPPDCFSLPTSFPT 123


>tr|A1HM07|A1HM07_9FIRM Putative uncharacterized protein
           OS=Thermosinus carboxydivorans Nor1 GN=TcarDRAFT_0446
           PE=4 SV=1
          Length = 36

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = +3

Query: 111 KDSQEVCLEAATLERVRNSSLIKRSCAEDER 203
           K++Q+V LEAA ++RVRNSSL++  CAED R
Sbjct: 5   KNNQDVGLEAAIIQRVRNSSLVEWRCAEDVR 35


>tr|Q0MX19|Q0MX19_ARAHY Leucine rich protein OS=Arachis hypogaea
           PE=2 SV=1
          Length = 182

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = -1

Query: 190 AQERLISELLRTLSRVAASRQTSW 119
           A +   SELLRTLSRVAAS+ TSW
Sbjct: 149 APDHSTSELLRTLSRVAASKPTSW 172


>tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprotein
           OS=Oryza sativa subsp. japonica GN=Os01g0790900 PE=3
           SV=1
          Length = 1546

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = -2

Query: 234 TSHSFGRPLSPAHLRRKSA 178
           TSHSFGR LSP HL+RK A
Sbjct: 613 TSHSFGRSLSPVHLQRKGA 631