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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944570
Clone id YMU02A01NGRL0006_H22
Library
Length 557
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_H22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAATATCTCCCTTATTATCTTGAGGAGGATGGCAATGGTGGTCTCAACCAGTGTGTGCG
CATGTAGCGCGGGTGGCTGGACGGCCCGGCACCGTTACCAGGAGCATCTCAACACACTTT
CCTTCTCGTCATCCACTTGGCCTGGAACGTCTCTTAAAGATAATGGATCCAAAAGAAGTA
ATTGCTCAATCCCCGTGGCAGCAATGCCACTACTGTCACTTGCAGCAGAATTTACTCAGC
AGAAGGTTGAGACTATTTATAATGACTGGATGATAGACGAAATGACTCTGAAAAACATAT
ATCTATGCTTCAGCCTGTTTTTTGTGTGGGGCTGCTGTGTATTTGGGTCCATGAAGGACC
CATTTTACGACAGTGATCTCTATAGAGGTGAGGGAGGCGATGGAAGTGGTCATTGGCTCT
ATCAAAAAGAGGAGGATGAAGAGGTGAAGGCCAGGGAGGAGCTGTGGAGGGAGGAGCTTG
CACGTGAAATCGAAGAGCGCGTGGGAGAGCTGCGAGAATCAAAGGAAGCCAAGGAGCTGG
TCTGAGCTGTGAAAACC
■■Homology search results ■■ -
sp_hit_id Q8BND4
Definition sp|Q8BND4|DX26B_MOUSE Protein DDX26B OS=Mus musculus
Align length 30
Score (bit) 30.0
E-value 8.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944570|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H22, 5'
         (557 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BND4|DX26B_MOUSE Protein DDX26B OS=Mus musculus GN=Ddx26b P...    30   8.0  

>sp|Q8BND4|DX26B_MOUSE Protein DDX26B OS=Mus musculus GN=Ddx26b PE=1
           SV=1
          Length = 861

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 121 PSRHPLGLERLLKIMDPKEVIAQSPWQQCH 210
           P   P+G + L+++  P  + A  PW  CH
Sbjct: 240 PDPLPVGEDTLMELCRPSNLFAAQPWHSCH 269
tr_hit_id A7PDK3
Definition tr|A7PDK3|A7PDK3_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera
Align length 110
Score (bit) 89.0
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944570|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H22, 5'
         (557 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PDK3|A7PDK3_VITVI Chromosome chr17 scaffold_12, whole genom...    89   2e-16
tr|A5BR34|A5BR34_VITVI Putative uncharacterized protein OS=Vitis...    89   2e-16
tr|A9PFW0|A9PFW0_POPTR Putative uncharacterized protein OS=Popul...    87   8e-16
tr|B7FML9|B7FML9_MEDTR Putative uncharacterized protein OS=Medic...    84   5e-15
tr|B6TFG6|B6TFG6_MAIZE Putative uncharacterized protein OS=Zea m...    83   9e-15
tr|Q6Z2U3|Q6Z2U3_ORYSJ Os02g0744000 protein OS=Oryza sativa subs...    83   1e-14
tr|B8AIF7|B8AIF7_ORYSI Putative uncharacterized protein OS=Oryza...    83   1e-14
tr|Q8RXS1|Q8RXS1_ARATH Putative uncharacterized protein At1g1873...    82   3e-14
tr|Q9M9U4|Q9M9U4_ARATH F6A14.16 protein OS=Arabidopsis thaliana ...    81   3e-14
tr|B6U6B2|B6U6B2_MAIZE Putative uncharacterized protein OS=Zea m...    80   7e-14
tr|B3H6Z4|B3H6Z4_ARATH Uncharacterized protein At1g18730.4 OS=Ar...    80   1e-13
tr|A8MRZ5|A8MRZ5_ARATH Uncharacterized protein At1g18730.2 OS=Ar...    80   1e-13
tr|A9SW72|A9SW72_PHYPA Predicted protein (Fragment) OS=Physcomit...    70   1e-10
tr|A3ABA5|A3ABA5_ORYSJ Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|B7K8C9|B7K8C9_9CHRO Putative uncharacterized protein OS=Cyano...    35   2.7  
tr|B8HVZ5|B8HVZ5_9CHRO Putative uncharacterized protein OS=Cyano...    34   4.6  
tr|B2ATL4|B2ATL4_PODAN Predicted CDS Pa_1_16270 OS=Podospora ans...    34   6.1  
tr|B0UYK5|B0UYK5_DANRE Novel protein similar to vertebrate ATP-b...    33   7.9  

>tr|A7PDK3|A7PDK3_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016315001
           PE=4 SV=1
          Length = 181

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
 Frame = +3

Query: 207 PLLSLAAEFTQQKVETIYND--WMIDEMTLKNIYLCFSLFFVWGCCVFGSMKDPFYDSDL 380
           PL+++  E  + + + I +   W +++ T+KN+Y  + +F  WGCC FGS KDP+YDS+ 
Sbjct: 69  PLMAVLVEHVEGQRDLITHKSIWHLNDETIKNVYTFYIMFTCWGCCFFGSTKDPYYDSEQ 128

Query: 381 YRGEGGDGSGHWLYQKXXXXXXXXXXXXXXXXXXXXXXXXVGELRESKEA 530
           YR +GGDG+GHW+Y+K                        VG LRE +EA
Sbjct: 129 YRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEA 178


>tr|A5BR34|A5BR34_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038217 PE=4 SV=1
          Length = 209

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
 Frame = +3

Query: 207 PLLSLAAEFTQQKVETIYND--WMIDEMTLKNIYLCFSLFFVWGCCVFGSMKDPFYDSDL 380
           PL+++  E  + + + I +   W +++ T+KN+Y  + +F  WGCC FGS KDP+YDS+ 
Sbjct: 97  PLMAVLVEHVEGQRDLITHKSIWHLNDETIKNVYTFYIMFTCWGCCFFGSTKDPYYDSEQ 156

Query: 381 YRGEGGDGSGHWLYQKXXXXXXXXXXXXXXXXXXXXXXXXVGELRESKEA 530
           YR +GGDG+GHW+Y+K                        VG LRE +EA
Sbjct: 157 YRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEA 206


>tr|A9PFW0|A9PFW0_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 180

 Score = 86.7 bits (213), Expect = 8e-16
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
 Frame = +3

Query: 207 PLLSLAAEFTQQKVETIYND--WMIDEMTLKNIYLCFSLFFVWGCCVFGSMKDPFYDSDL 380
           PL+++  E  + + + I +   W + +  +KN+Y+ + +F  WGC  FGSMKDP+YDS+ 
Sbjct: 68  PLMAVMVEHIEGQRDLITHKSIWHLSDRAIKNVYVFYLMFTCWGCLFFGSMKDPYYDSEA 127

Query: 381 YRGEGGDGSGHWLYQKXXXXXXXXXXXXXXXXXXXXXXXXVGELRESKEA 530
           YR +GGDGSGHW+Y K                        VG LRE +EA
Sbjct: 128 YRKDGGDGSGHWVYDKQDDIEESARAELWREELIEEIEQKVGGLRELEEA 177


>tr|B7FML9|B7FML9_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 182

 Score = 84.0 bits (206), Expect = 5e-15
 Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
 Frame = +3

Query: 204 MPLLSLAAEFTQQKVETIYND--WMIDEMTLKNIYLCFSLFFVWGCCVFGSMKDPFYDSD 377
           +PL+++  E  + + + I     W + +  +KN+Y  + +F VWG   FGSMKDP+YDS+
Sbjct: 63  IPLMAILVEQLEGQRDLITEKTIWHLSDQQIKNVYAWYIMFTVWGVLFFGSMKDPYYDSE 122

Query: 378 LYRGEGGDGSGHWLYQKXXXXXXXXXXXXXXXXXXXXXXXXVGELRESKEA 530
            YRG+GGDG+G+W+Y+K                        VG LRE +EA
Sbjct: 123 TYRGDGGDGTGNWIYEKQEVMEAEAREALWREELIEEIEQKVGGLREIEEA 173


>tr|B6TFG6|B6TFG6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 181

 Score = 83.2 bits (204), Expect = 9e-15
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 2/129 (1%)
 Frame = +3

Query: 156 KDNGSKRSNCSIPVAAMPLLSLAAEFTQQKVETIYND--WMIDEMTLKNIYLCFSLFFVW 329
           K +GS R      +  +PL+    E      + +     W + ++ LK++Y  +++F VW
Sbjct: 47  KRSGSARVGAFPSLDVVPLMVTMVEHVDMSRDYVVTKSIWHLSDVALKSVYTFYAMFTVW 106

Query: 330 GCCVFGSMKDPFYDSDLYRGEGGDGSGHWLYQKXXXXXXXXXXXXXXXXXXXXXXXXVGE 509
           G C F SMKDPFYDS+ YR +GGDG+ HW Y +                        VG 
Sbjct: 107 GVCFFASMKDPFYDSETYRSQGGDGTVHWYYDRQEDLEASAREELLREELLEEIEQRVGG 166

Query: 510 LRESKEAKE 536
           LRE +EA +
Sbjct: 167 LRELEEASK 175


>tr|Q6Z2U3|Q6Z2U3_ORYSJ Os02g0744000 protein OS=Oryza sativa subsp.
           japonica GN=OJ1734_E02.25 PE=2 SV=1
          Length = 181

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
 Frame = +3

Query: 165 GSKRSNCSIPVAAMPLLSLAAEFTQQKVETIYND--WMIDEMTLKNIYLCFSLFFVWGCC 338
           GS ++N S P+  + L+    E    + + + +   W + +  LK++Y  ++ F VWG C
Sbjct: 51  GSVKANAS-PLDVVTLMVTMVEHVDLQRDYVVHKSIWHLSDAALKSVYTFYAFFTVWGIC 109

Query: 339 VFGSMKDPFYDSDLYRGEGGDGSGHWLYQKXXXXXXXXXXXXXXXXXXXXXXXXVGELRE 518
            F SMKDPFYDS+ YRG+GGDG+ HW Y +                        VG LRE
Sbjct: 110 FFASMKDPFYDSEAYRGQGGDGTVHWYYDRQEDLEASAREELLREELLEEIEQRVGGLRE 169

Query: 519 SKEA 530
            +EA
Sbjct: 170 LEEA 173


>tr|B8AIF7|B8AIF7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08911 PE=4 SV=1
          Length = 181

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
 Frame = +3

Query: 165 GSKRSNCSIPVAAMPLLSLAAEFTQQKVETIYND--WMIDEMTLKNIYLCFSLFFVWGCC 338
           GS ++N S P+  + L+    E    + + + +   W + +  LK++Y  ++ F VWG C
Sbjct: 51  GSVKANAS-PLDVVTLMVTMVEHVDLQRDYVVHKSIWHLSDAALKSVYTFYAFFTVWGIC 109

Query: 339 VFGSMKDPFYDSDLYRGEGGDGSGHWLYQKXXXXXXXXXXXXXXXXXXXXXXXXVGELRE 518
            F SMKDPFYDS+ YRG+GGDG+ HW Y +                        VG LRE
Sbjct: 110 FFASMKDPFYDSEAYRGQGGDGTVHWYYDRQEDLEASAREELLREELLEEIEQRVGGLRE 169

Query: 519 SKEA 530
            +EA
Sbjct: 170 LEEA 173


>tr|Q8RXS1|Q8RXS1_ARATH Putative uncharacterized protein At1g18730
           OS=Arabidopsis thaliana GN=At1g18730 PE=2 SV=1
          Length = 175

 Score = 81.6 bits (200), Expect = 3e-14
 Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
 Frame = +3

Query: 204 MPLLSLAAEFTQ--QKVETIYNDWMIDEMTLKNIYLCFSLFFVWGCCVFGSMKDPFYDSD 377
           +PL+++  +  +  + + T  + W + +  +KN+Y+ + +F  WGC  FGS KDPFYDS+
Sbjct: 62  LPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSE 121

Query: 378 LYRGEGGDGSGHWLYQKXXXXXXXXXXXXXXXXXXXXXXXXVGELRESKEA 530
            YRG+GGDG+G+W+Y+                         VG LRE +EA
Sbjct: 122 EYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEA 172


>tr|Q9M9U4|Q9M9U4_ARATH F6A14.16 protein OS=Arabidopsis thaliana
           GN=F6A14.16 PE=4 SV=1
          Length = 108

 Score = 81.3 bits (199), Expect = 3e-14
 Identities = 35/88 (39%), Positives = 49/88 (55%)
 Frame = +3

Query: 267 WMIDEMTLKNIYLCFSLFFVWGCCVFGSMKDPFYDSDLYRGEGGDGSGHWLYQKXXXXXX 446
           W + +  +KN+Y+ + +F  WGC  FGS KDPFYDS+ YRG+GGDG+G+W+Y+       
Sbjct: 18  WHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDPFYDSEEYRGDGGDGTGYWVYETQEDIEE 77

Query: 447 XXXXXXXXXXXXXXXXXXVGELRESKEA 530
                             VG LRE +EA
Sbjct: 78  KARAELWREELIEEIEQKVGGLRELEEA 105


>tr|B6U6B2|B6U6B2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 116

 Score = 80.1 bits (196), Expect = 7e-14
 Identities = 35/90 (38%), Positives = 49/90 (54%)
 Frame = +3

Query: 267 WMIDEMTLKNIYLCFSLFFVWGCCVFGSMKDPFYDSDLYRGEGGDGSGHWLYQKXXXXXX 446
           W + ++ LK++Y  +++F VWG C F SMKDPFYDS+ YR +GGDG+ HW Y +      
Sbjct: 21  WHLSDVALKSVYTFYAMFTVWGVCFFASMKDPFYDSETYRSQGGDGTVHWYYDRQEDLEA 80

Query: 447 XXXXXXXXXXXXXXXXXXVGELRESKEAKE 536
                             VG LRE +EA +
Sbjct: 81  SAREELLREELLEEIEQRVGGLRELEEASK 110