DK944572
Clone id YMU02A01NGRL0006_H24
Library
Length 186
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0006_H24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
TTCTGAGGAGGAAGTTTTTGAGGGGAAAGATAAATCGAGCAAAGATCTGGATATGGAAAT
CACCTTCCACAGTGGGCTGGAGGAACTAAGCAAACGGCTTATGGATAAAACCAAGCAAAA
AGACAGCGATGAGACCGTGTGGGAAGCATATTTACGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
■■Homology search results ■■ -
sp_hit_id Q3ILP9
Definition sp|Q3ILP9|RPOB_PSEHT DNA-directed RNA polymerase subunit beta OS=Pseudoalteromonas haloplanktis (strain TAC 125)
Align length 37
Score (bit) 29.6
E-value 4.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944572|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H24, 5'
(139 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3ILP9|RPOB_PSEHT DNA-directed RNA polymerase subunit beta OS... 30 4.8
sp|Q2GWF3|SET1_CHAGB Histone-lysine N-methyltransferase, H3 lysi... 29 8.3

>sp|Q3ILP9|RPOB_PSEHT DNA-directed RNA polymerase subunit beta
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rpoB PE=3 SV=1
Length = 1341

Score = 29.6 bits (65), Expect = 4.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1

Query: 121 FLLGFIHKPFA*FLQPTVEGDFHIQIFARFIFPLKNF 11
FLL K F FL P +GD ++ R +FP+K++
Sbjct: 26 FLLSTQLKSFKKFLVPDADGDHGLEAAFRSVFPIKSY 62


>sp|Q2GWF3|SET1_CHAGB Histone-lysine N-methyltransferase, H3
lysine-4 specific OS=Chaetomium globosum GN=SET1 PE=3
SV=1
Length = 1076

Score = 28.9 bits (63), Expect = 8.3
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3

Query: 3 LRRKFLRGKINRAKIWIWK 59
LR++F RGKI+ ++W+W+
Sbjct: 784 LRKRFGRGKIDDPELWVWR 802


tr_hit_id A9TP42
Definition tr|A9TP42|A9TP42_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 45.8
E-value 0.001
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944572|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0006_H24, 5'
(139 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TP42|A9TP42_PHYPA Predicted protein OS=Physcomitrella paten... 46 0.001
tr|A7R112|A7R112_VITVI Chromosome chr4 scaffold_333, whole genom... 38 0.22
tr|Q9MAC6|Q9MAC6_ARATH T4P13.15 protein OS=Arabidopsis thaliana ... 36 1.1
tr|Q7XHX9|Q7XHX9_ORYSJ Os07g0531700 protein OS=Oryza sativa subs... 35 2.4
tr|A3BKL2|A3BKL2_ORYSJ Putative uncharacterized protein OS=Oryza... 35 2.4
tr|A2YM41|A2YM41_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.4
tr|A8I029|A8I029_CHLRE Predicted protein OS=Chlamydomonas reinha... 34 3.1
tr|A4S3X9|A4S3X9_OSTLU Predicted protein OS=Ostreococcus lucimar... 34 3.1
tr|A7AMR0|A7AMR0_BABBO Putative uncharacterized protein OS=Babes... 34 4.1
tr|Q6FKH0|Q6FKH0_CANGA Similar to uniprot|Q06344 Saccharomyces c... 33 7.0

>tr|A9TP42|A9TP42_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_171154 PE=4 SV=1
Length = 619

Score = 45.8 bits (107), Expect = 0.001
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +2

Query: 2 SEEEVFEGKDKSSKDLDMEITFHSGLEELSKRLMDKTK-QKDSDETV 139
+EE G+ K D+DME+TFH+GL ELS++L+ K + +K DETV
Sbjct: 388 TEEVEPHGQKKKKGDVDMEVTFHTGLSELSEKLLQKKEAKKRGDETV 434


>tr|A7R112|A7R112_VITVI Chromosome chr4 scaffold_333, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00011733001
PE=4 SV=1
Length = 714

Score = 38.1 bits (87), Expect = 0.22
Identities = 18/42 (42%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Frame = +2

Query: 20 EGKDKSSKD--LDMEITFHSGLEELSKRLMDKTKQKDSDETV 139
+G D+ ++ DME+TF++GLE++SKR+++K ++K ETV
Sbjct: 405 DGSDRDDEEDGQDMEVTFNTGLEDISKRILEKREKK--SETV 444


>tr|Q9MAC6|Q9MAC6_ARATH T4P13.15 protein OS=Arabidopsis thaliana
GN=T4P13.15 PE=4 SV=1
Length = 713

Score = 35.8 bits (81), Expect = 1.1
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +2

Query: 8 EEVFEGKD-KSSKDLDMEITFHSGLEELSKRLMDK 109
E+V KD + D DME+TF++GLE+LSK ++ K
Sbjct: 437 EDVDSDKDLEEENDQDMEVTFNTGLEDLSKEILKK 471


>tr|Q7XHX9|Q7XHX9_ORYSJ Os07g0531700 protein OS=Oryza sativa subsp.
japonica GN=P0681F05.134 PE=2 SV=1
Length = 665

Score = 34.7 bits (78), Expect = 2.4
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +2

Query: 2 SEEEVFEGKDKSSKDLDMEITFHSGLEELSKRLMDK 109
SEEE +G+D MEITF++ LE+LSKR++D+
Sbjct: 399 SEEEQTDGED-------MEITFNTELEDLSKRILDR 427


>tr|A3BKL2|A3BKL2_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_023584 PE=4 SV=1
Length = 759

Score = 34.7 bits (78), Expect = 2.4
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +2

Query: 2 SEEEVFEGKDKSSKDLDMEITFHSGLEELSKRLMDK 109
SEEE +G+D MEITF++ LE+LSKR++D+
Sbjct: 493 SEEEQTDGED-------MEITFNTELEDLSKRILDR 521


>tr|A2YM41|A2YM41_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_26294 PE=4 SV=1
Length = 759

Score = 34.7 bits (78), Expect = 2.4
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +2

Query: 2 SEEEVFEGKDKSSKDLDMEITFHSGLEELSKRLMDK 109
SEEE +G+D MEITF++ LE+LSKR++D+
Sbjct: 493 SEEEQTDGED-------MEITFNTELEDLSKRILDR 521


>tr|A8I029|A8I029_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_143005 PE=4 SV=1
Length = 1059

Score = 34.3 bits (77), Expect = 3.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2

Query: 23 GKDKSSKDLDMEITFHSGLEELSKRLMDKTKQK 121
G K D+DM +TFH GLE L +RL K +++
Sbjct: 663 GGKKKKGDVDMVVTFHGGLEGLGERLKKKKEEE 695


>tr|A4S3X9|A4S3X9_OSTLU Predicted protein OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_26209 PE=4 SV=1
Length = 782

Score = 34.3 bits (77), Expect = 3.1
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2

Query: 50 DMEITFHSGLEELSKRLMDKTKQKD 124
DME+TFH+GLEE R+ K KQKD
Sbjct: 487 DMEVTFHAGLEEFGARI--KKKQKD 509


>tr|A7AMR0|A7AMR0_BABBO Putative uncharacterized protein OS=Babesia
bovis GN=BBOV_III002790 PE=4 SV=1
Length = 686

Score = 33.9 bits (76), Expect = 4.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2

Query: 2 SEEEVFEGKDKSSKDLDMEITFHSGLEELSKRLMDKTKQKDSDE 133
S E V+E D+ K L M LEE RL+D +Q DS++
Sbjct: 39 SSENVYELSDEHKKMLQMPFCHKDSLEEEYNRLLDSVEQSDSED 82


>tr|Q6FKH0|Q6FKH0_CANGA Similar to uniprot|Q06344 Saccharomyces
cerevisiae YDR365c OS=Candida glabrata GN=CAGL0L11638g
PE=4 SV=1
Length = 608

Score = 33.1 bits (74), Expect = 7.0
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2

Query: 20 EGKDKSSKD--LDMEITFHSGLEELSKRLMDKTKQKDSDETV 139
+GKD S +D +DMEITF GL+E + DK + + + T+
Sbjct: 395 DGKDGSDEDEGMDMEITFTPGLDEANAEGEDKDGEDNEETTI 436